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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068006 ID=TCONS_00068006|Name=TCONS_00068006|organism=Clytia hemisphaerica|type=transcript|length=668bp
tTTATCAGCAAAGAACAATTACACATTGGTTAGATTGGTGCATCACCAGA
ACTATCAAATATTTGCTCAACTTGGGAATGGTGTCGATTTTGGGAATTCC
TCGAATATCATTACAGCCAAGACTGATGTTAGCTATAGGCCACCAGAAGA
TATCAAATTACAATCAGCAAATGAGAATGACATAACATTAGCCATACAAT
TGCCACTGGACGATGACTACACCACACACCTCAAATTCCATATCACGTCC
AACAGAGATACTGAATCGTCTGTTAAAATTCTCCCTCTAAGTACACGTGG
TGTCTATACACTAGATGACTTAAAGCAATTGACTGAATATACCATAAAAG
TTGCTACAGGCAATGGCAAAGAGTTTGGTCGGTATGGAGATGAAATTAAA
GTGACAACCAAAGTACGGTATGATGCGCCAACTCTAATTGTACCAATCAA
TATCTCATACAACCAAGTTAAACTTAAAGTAGTCATACCAAAATATCTGG
TTGAAAACAAGTTGGCATCCATCCTAAAAGTCACTATCAGGAATGAAATA
TCAGTTGGTGTGCTTCCATACCCAATCAATGGCATCGAGACTGACATTGT
ACTTCGAGATTTGAAACAGGGGTTGAGATACCAGATTCACATTGCAACAG
GGGATGGACGAATCTTTG Run BLAST on NCBI transcript from alignment at scaffold_478:376100..378400+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068006 ID=TCONS_00068006|Name=TCONS_00068006|organism=Clytia hemisphaerica|type=transcript|length=2301bp|location=Sequence derived from alignment at scaffold_478:376100..378400+ (Clytia hemisphaerica)
tTTATCAGCAAAGAACAATTACACATTGGTTAGATTGGTGCATCACCAGA
ACTATCAAATATTTGCTCAACTTGGGAATGGTGTCGATTTTGGGAATTCC
TCGAATATCATTACAGCCAAGACTGATGGTAAGAATATGTAGAAAATGAG
ATAATACTGAAAAGAAAGGATGTAGTGAAGATCTTTTTCTATGAAGTCTG
AGAGTTTTTAGGGGTTTAGAATTCTTACTAAATAAATAACTAAGTAGATT
GCAAAGGTAGTGAAGGTCTTTTTCTAAAATCTGAGAACTTTTAAGAAAGT
AAATTACAAAACATTTCTAGCTAGCTAACCAGTTTAAAGGACTTTCAGAC
GTTCAGACAGAGACATTATGCAGCTAGAATACCTTATATACCATTATAGA
TAGACTATAACTTATAAAAACTATTGTTGCCACAGTTCTGGGTAAACAAA
GGAACTTTTATAAAACTCATTTTTATTTAAGTTTCTTGGATAAACTGCGT
TGAAAACGTACATTTTCATTTAGTAAGATTTAAAACCATTACATTACTTG
TATTTCACGCCTCATGCGtgattatttagaaaaattgaagtATATGTTAC
CGTAAGTTATTCTAATAATGCCGACAACcttcttctaatttcgacaccct
tctttatagataggaataattggAAGATCGGAATTgctgatggaaactat
tttCCCTTGCTTAGCTATCAgattggaaaaaatcttttgtctatcagtga
tccCAACCTTCTGATcattcctatctttaaagaagattgtcgaaattaga
agagggatctCGACGTTAGACGAACTTACAGTAGTAGTTAGACTATTTAT
TTTATGGACTAGCAGTACCAGAATTCTACAGCTAGTAAAACAGATACAAA
AGAAACTATGACAAAAATTACACAACAATATGACATTGACAAAGATAAAG
ACTTCTCTTGACTTGACGTGACTAAAAGACGAATACTCgacagaaatttt
tcaaaactaatTACTCCTTTTTCTTACGTTTGATTCCATAGATACAGCGG
actttcgctaattcgaacttctattatccaaACCTTTCCAAAACTCGAAA
AGATTCTCAGGTCCCGTTAGAGAGAAACCCTTCACAAACACTCTCTATAA
TCCGAATCTCTCTGTTTTTTCGAACAAATTATTTTCCccgtttgagttcg
aattagggagGGTTAACTGTGGATAGAGCCGATATTTTACAAGGATAGCC
CAGCAATCTAAGACTTTTAAACAGTCTTTTGATTCCTTttacggggtcca
cggccagctaAATCGGCTATCAATGAACTAAACGGAActttggaaggagc
ggggattcgaaccgggATCCCAGGTTTCAGgtgctgacgcctttgaccat
tCGGCCATCGTTTCTTAATTAATTTTTCCCCCTAAATATCcttgctataa
ttttttacctctAATATAACCCTCCAGTTAGCTATAGGCCACCAGAAGAT
ATCAAATTACAATCAGCAAATGAGAATGACATAACATTAGCCATACAATT
GCCACTGGACGATGACTACACCACACACCTCAAATTCCATATCACGTCCA
ACAGAGATACTGAATCGTCTGTTAAAATTCTCCCTCTAAGTACACGTGGT
GTCTATACACTAGATGACTTAAAGCAATTGACTGAATATACCATAAAAGT
TGCTACAGGCAATGGCAAAGAGTTTGGTCGGTATGGAGATGAAATTAAAG
TGACAACCAAAGGTATTCccttatttttttcgaatttgttCAAATTATAT
CTTTGGTCCACTAACCTATCACAGATAGTCAAAAACCATTTTGACCAGTG
TCATGCCTAAATTCTAGAGTTGAAAATTCCAGACCTGAAAATATTAGTTT
TATCCTTTAAAAACCTTCCTCGTCAAAAGAACTTTCTAGTGAGTAAAGAC
TGAGAAAGGTAAGGggtttttgaaattattttctcttTAGTACGGTATAA
TGCGCCAACTCTGATCGCNAGAAGTGAGACGTCTTTCTTCTTTTAGTACG
GTATGATGCGCCAACTCTAATTGTACCAATCAATATCTCATACAACCAAG
TTAAACTTAAAGTAGTCATACCAAAATATCTGGTTGAAAACAAGTTGGCA
TCCATCCTAAAAGTCACTATCAGGAATGAAATATCAGTTGGTGTGCTTCC
ATACCCAATCAATGGCATCGAGACTGACATTGTACTTCGAGATTTGAAAC
AGGGGTTGAGATACCAGATTCACATTGCAACAGGGGATGGACGAATCTTT
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068006-exon-scaffold_478-1491911889:376100..376227 | TCONS_00068006-exon-scaffold_478-1491911889:376100..376227 | Clytia hemisphaerica | exon |
| TCONS_00068006-exon-scaffold_478-1510915933:376100..376227 | TCONS_00068006-exon-scaffold_478-1510915933:376100..376227 | Clytia hemisphaerica | exon |
| TCONS_00068006-exon-scaffold_478-1575043694:376100..376227 | TCONS_00068006-exon-scaffold_478-1575043694:376100..376227 | Clytia hemisphaerica | exon |
| TCONS_00068006-exon-scaffold_478-1491911889:377577..377861 | TCONS_00068006-exon-scaffold_478-1491911889:377577..377861 | Clytia hemisphaerica | exon |
| TCONS_00068006-exon-scaffold_478-1510915933:377577..377861 | TCONS_00068006-exon-scaffold_478-1510915933:377577..377861 | Clytia hemisphaerica | exon |
| TCONS_00068006-exon-scaffold_478-1575043694:377577..377861 | TCONS_00068006-exon-scaffold_478-1575043694:377577..377861 | Clytia hemisphaerica | exon |
| TCONS_00068006-exon-scaffold_478-1491911889:378146..378400 | TCONS_00068006-exon-scaffold_478-1491911889:378146..378400 | Clytia hemisphaerica | exon |
| TCONS_00068006-exon-scaffold_478-1510915933:378146..378400 | TCONS_00068006-exon-scaffold_478-1510915933:378146..378400 | Clytia hemisphaerica | exon |
| TCONS_00068006-exon-scaffold_478-1575043694:378146..378400 | TCONS_00068006-exon-scaffold_478-1575043694:378146..378400 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_478 | supercontig | scaffold_478:376100..378400 + |
Blast
The following BLAST results are available for this feature:
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