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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068018 ID=TCONS_00068018|Name=TCONS_00068018|organism=Clytia hemisphaerica|type=transcript|length=975bp
tttcacatttaccAGCTGAGGTTGTCATAAAGATATAAGACTTTGAATAC
TGCAGAAAAACGAATAAATGTTTTTGATGTTGATCTTTATAATTATTACT
AGGATCGAAACTACTACTACTGCTCACATACTCACAACTTAGTACGATTC
AAACAACTTTATAGTTGCCAGTACGGTTCACAAAATTGATCAAAAGCCGG
GAGTGGTGCATGGTAAGACGTTGATTAATTTATACAAACTTCTGTTATTC
CGTACTGTGTAACAGAATTATAAACGACTCAAAGTTTATCTGGGTAACCT
TTAATGATATTGCATATAAAAGCTTACAAAATGGAAATGTTTTTAACGAT
CTGCTTGTTACATATGTGGTGTACAGGCAGCGTCTTTTCAAGCAATATCA
TTCGGATGAGCGACCAAAATCAAGCAACGTTCGTTCTAAAACATAGAGGG
AAACGTCCCGCTCAAGCACCGTATAAGAATATTACAGCAGAAGAAGTTTT
CGATTGCGCTGACGCATGCACATATGATACTCGTTGCAAATCAATCAATT
TTGTTGAAGATGCCAGCGACGATGATGAAAATGTTGAGGAGAATTGTCAA
CTTGTTGAATATGATCGAAATGATGTTAATGAATATGTTGATGCACCGAA
TGTTAAACATTTTGATACCGGACGTTCAACCCTAACTAGAATTATACCGT
GGTTAACAAGACAAGACGGTGGTTGCTTGATCAATTGGGGCGGTGGGTGT
GATTCGTCCATAGATGACATATTTCTTAGATACACGgTCCCAACAGAAGT
ACTGTGACACAATCTCTACTATTTTCAACTATAACCCTGACACAGGCATA
TTGACGCACCATTGCACTGGGAATCAATTATGCATTACTCAGCATAGCGG
ACAAACCTTTAGAATCAAGGTCACAAAAGACTGCGAACAAACAAACATTG
AGAACTACTTTGGTGTCTTTCGAAG Run BLAST on NCBI protein sequence of TCONS_00068018-protein >TCONS_00068018-protein ID=TCONS_00068018-protein|Name=TCONS_00068018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MILHIKAYKMEMFLTICLLHMWCTGSVFSSNIIRMSDQNQATFVLKHRGK
RPAQAPYKNITAEEVFDCADACTYDTRCKSINFVEDASDDDENVEENCQL
VEYDRNDVNEYVDAPNVKHFDTGRSTLTRIIPWLTRQDGGCLINWGGGCD
SSIDDIFLRYTVPTEVL Run BLAST on NCBI transcript from alignment at scaffold_478:528746..530854+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068018 ID=TCONS_00068018|Name=TCONS_00068018|organism=Clytia hemisphaerica|type=transcript|length=2109bp|location=Sequence derived from alignment at scaffold_478:528746..530854+ (Clytia hemisphaerica)
tttcacatttaccAGCTGAGGTTGTCATAAAGATATAAGACTTTGAATAC
TGCAGAAAAACGAATAAATGTTTTTGATGTTGATCTTTATAATTATTACT
AGGATCGAAACTACTACTACTGCTCACATACTCACAACTTAGTACGATTC
AAACAACTTTATAGTTGCCAGTACGGTTCACAAAATTGATCAAAAGCCGG
GAGTGGTGCATGGTAAGACGTTGATTAATTTATACAAACTTCTGTTATTC
CGTACTGTGTAACAGAATTATAAACGACTCAAAGTTTATCTGGGTAACCT
TTAATGATATTGCATATAAAAGCTTACAAAATGGAAATGTTTTTAACGAT
CTGCTTGTTACATATGTGGTGTACAGGCAGCGTCTTTTCAAGCAATATCA
TTCGGATGAGCGACCAAAATCAAGCAACGTTCGTTCTAAAACATAGAGGG
AAACGTCCCGCTCAAGCACCGTATAAGAATATTACAGCAGAAGAAGTTTT
CGATTGCGCTGACGCATGCACATATGATACTCGTTGCAAATCAATCAATT
TTGTTGAAGATGCCAGCGACGATGATGAAAATGTTGAGGAGAATTGTCAA
CTTGTTGAATATGATCGAAATGATGTTAATGAATATGTTGATGCACCGAA
TGTTAAACATTTTGATACCGGACGTTCAACCCTAACTAGAATTATACCGT
GGTTAACAAGACAAGACGGTGGTTGCTTGATCAATTGGGGCGGTGGGTGT
GATTCGTCCATAGATGACATATTTCTTAGATACACGTTAgtatatacacc
ttttcgaccgtagccaccaattgccgcgcgggcatttttctgtccgcttt
atcccactaaaaccgtcccagtcctttattcgcaccaatagacaatagaa
aaatgcgtcataaaaggattgggacggttttagtgggataaagcggacaa
aaaatgcccgcgcgactacggttgaaaaagtgtattttcaatctttcttt
tTGATACTCTTTTGCATTAACCCTGCTATCAACCTTTGAAATTCTTCAGA
TACTTTACTTGATAGAGAGACAGCTTCATTCCTTTAAAaataacatttaa
aacaaaggCTTTGTTATTTATTAACAAAGAAATTTGACTGACAATGTATT
GTCAGAAAGTTGATAGTTTGTCTTCAGGGACATACCAAAATGTTGTAAAA
AGATAAAGAGAAGCTATCAAAGTTTTAGAATTTCTATGGCACGGGGTAAT
TGCTCTGCAAGTAGAAAAAGAATATTCGCCTGACCATATTTTTCTGCCCA
CCCTGTAATCATAGTATaagcggctttcttatactatgctgtaatccaga
tgagatggagtttttataagacactttaataattggtcattgggctcttc
cagaaaaaattcgttcatggggggtggaggatatattattttttcatgaa
ttatccctggacattttgatttttaaccccctggacacgggttatacccc
tggacaaacatcaaatcaaccccgtggacacaaaaaattacccctggaca
ttggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNttaccccctggacattgcaattttttg
gcattttttcaatacccctggacaattcatcctccaccccccatgaacgg
attttttctggaagagcccatttgaagtaataaaaatgacgggttcttta
gaaaaagtaacaaaattactttattactggttaacgaccaaccaaatcaa
ataagagcttgtaaaaactccatctcgtcacCTGTAATCATGaaaagaag
aatattttttcaactttcaggTCCCAACAGAAGTACTGTGACACAATCTC
TACTATTTTCAACTATAACCCTGACACAGGCATATTGACGCACCATTGCA
CTGGGAATCAATTATGCATTACTCAGCATAGCGGACAAACCTTTAGAATC
AAGGTCACAAAAGACTGCGAACAAACAAACATTGAGAACTACTTTGGTGT
CTTTCGAAG Coding sequence (CDS) from alignment at scaffold_478:528746..530854+ >TCONS_00068018 ID=TCONS_00068018|Name=TCONS_00068018|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_478:528746..530854+ (Clytia hemisphaerica)
ATGATATTGCATATAAAAGCTTACAAAATGGAAATGTTTTTAACGATCTG
CTTGTTACATATGTGGTGTACAGGCAGCGTCTTTTCAAGCAATATCATTC
GGATGAGCGACCAAAATCAAGCAACGTTCGTTCTAAAACATAGAGGGAAA
CGTCCCGCTCAAGCACCGTATAAGAATATTACAGCAGAAGAAGTTTTCGA
TTGCGCTGACGCATGCACATATGATACTCGTTGCAAATCAATCAATTTTG
TTGAAGATGCCAGCGACGATGATGAAAATGTTGAGGAGAATTGTCAACTT
GTTGAATATGATCGAAATGATGTTAATGAATATGTTGATGCACCGAATGT
TAAACATTTTGATACCGGACGTTCAACCCTAACTAGAATTATACCGTGGT
TAACAAGACAAGACGGTGGTTGCTTGATCAATTGGGGCGGTGGGTGTGAT
TCGTCCATAGATGACATATTTCTTAGATACACGgTCCCAACAGAAGTACT
GTGAATGATATTGCATATAAAAGCTTACAAAATGGAAATGTTTTTAACGA
TCTGCTTGTTACATATGTGGTGTACAGGCAGCGTCTTTTCAAGCAATATC
ATTCGGATGAGCGACCAAAATCAAGCAACGTTCGTTCTAAAACATAGAGG
GAAACGTCCCGCTCAAGCACCGTATAAGAATATTACAGCAGAAGAAGTTT
TCGATTGCGCTGACGCATGCACATATGATACTCGTTGCAAATCAATCAAT
TTTGTTGAAGATGCCAGCGACGATGATGAAAATGTTGAGGAGAATTGTCA
ACTTGTTGAATATGATCGAAATGATGTTAATGAATATGTTGATGCACCGA
ATGTTAAACATTTTGATACCGGACGTTCAACCCTAACTAGAATTATACCG
TGGTTAACAAGACAAGACGGTGGTTGCTTGATCAATTGGGGCGGTGGGTG
TGATTCGTCCATAGATGACATATTTCTTAGATACACGgTCCCAACAGAAG
TACTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068018-exon-scaffold_478-1491911889:528746..529531 | TCONS_00068018-exon-scaffold_478-1491911889:528746..529531 | Clytia hemisphaerica | exon |
| TCONS_00068018-exon-scaffold_478-1510915933:528746..529531 | TCONS_00068018-exon-scaffold_478-1510915933:528746..529531 | Clytia hemisphaerica | exon |
| TCONS_00068018-exon-scaffold_478-1575043694:528746..529531 | TCONS_00068018-exon-scaffold_478-1575043694:528746..529531 | Clytia hemisphaerica | exon |
| TCONS_00068018-exon-scaffold_478-1491911889:530666..530854 | TCONS_00068018-exon-scaffold_478-1491911889:530666..530854 | Clytia hemisphaerica | exon |
| TCONS_00068018-exon-scaffold_478-1510915933:530666..530854 | TCONS_00068018-exon-scaffold_478-1510915933:530666..530854 | Clytia hemisphaerica | exon |
| TCONS_00068018-exon-scaffold_478-1575043694:530666..530854 | TCONS_00068018-exon-scaffold_478-1575043694:530666..530854 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_478 | supercontig | scaffold_478:528746..530854 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003609 | Pan_app |
Blast
The following BLAST results are available for this feature:
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