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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068042 ID=TCONS_00068042|Name=TCONS_00068042|organism=Clytia hemisphaerica|type=transcript|length=1315bp
ACATAAAAAAGACCCGTTGTTTGTTACTAGACGAAATAATGGCTTACGCT
GGTAGCTTTCATATTCGCATATGGCAACTGATTTGGTATTGCGCCATTTG
TTTGTTTGGTACTCTTGGTAACAGTCTCATTATCTACTTAGCAACGGTCG
CTAAGAAGGGTGGCATTGATCGGAAAGCGCCCTTTAATATATATCTAGTC
GCCCTAGCGGTGACTGACTTCCTGGTTTGTCTATCCTCTCTACCAACCTA
CATCTTATCAACGAATATATTTTATCATCCGTCAAACGAAGGTGGACAAT
GGATGTGTAAATTACTGACTGGTTATTTTATACCATTTTGGTTTATGGAT
GTATCAGTGTTTCTACTAGCAGCTTTGGCGATTGAAAGATGGAGAGTCAT
TGTGAAGCCTTATGCGAAATTACGCAGACCAAAGTTGAGATCAACTCTTA
TGGTTATCACTATGGTAACGTTATTGGGAATCATAGCACAAGCTCCTATT
CTGTATGCTGCCCATTATGTTGGTTCAGAAATGGCTGATATAGGTAATGT
CTGTTCATACACCCATCAAGACCTCGCCAGTAAACTTCTTCATTATAACC
AATTGCTATTGGAAACAATCATTCCAACGTTAATCTTCTTTGTTTGCTTC
TACCAAATGTACAAGACTTTATCCAAAAGAAAGCAGACCCTTCGAACGCA
GCTTACAGCCTACCAGCAGACTAGCATTTCCACAGAGAAGCAACCAACAT
CAAGtaataacaatgaaaaaaagattgaacACAAAAACGGTCTACAAAGG
CAAAAGAGTTTGAAAATCCATTCTTCAGGATTACAAGAGAAAATCAACAT
GCAGTGTAGCTCTCTTAAGAGATTTGTAAAAGGTCAACAGCCTACAGTCT
CGCCTCTGCAACAGCAAGCGCACGCTCTAAAACGTACAAAGCAGACTATA
AACAGTATGTTACTTGTGGTTGTTTCATTCATAGTCTGTGTTTTCATCAA
CGAAATCCTGTTCTTGCTAACCAAGCAAGTTCTTAATATCACAAACTTGC
AATGGAATTCAGAAATTTATCAAATCAGTGTCATGTTACGTTTCACGAAT
TCGTGCATCAATCCCCTTATCTATggtttgaaatcgaaagtgtttaGAGA
TCGGCTGAAAGAGATTTTACGCTTGTCTAGAAAACCACGTGGGCTTAGTG
AGACACGCTTTGAGGAAGCTCTGAAGCATGGCAGATCTCTATCAGTCTTT
TATGTTTCGTCAAGTTCGGTGAAGGACGGTTTGGAGGAgacaaaatttaa
ctttttaaaaaattg Run BLAST on NCBI protein sequence of TCONS_00068042-protein >TCONS_00068042-protein ID=TCONS_00068042-protein|Name=TCONS_00068042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp
IKKTRCLLLDEIMAYAGSFHIRIWQLIWYCAICLFGTLGNSLIIYLATVA
KKGGIDRKAPFNIYLVALAVTDFLVCLSSLPTYILSTNIFYHPSNEGGQW
MCKLLTGYFIPFWFMDVSVFLLAALAIERWRVIVKPYAKLRRPKLRSTLM
VITMVTLLGIIAQAPILYAAHYVGSEMADIGNVCSYTHQDLASKLLHYNQ
LLLETIIPTLIFFVCFYQMYKTLSKRKQTLRTQLTAYQQTSISTEKQPTS
SNNNEKKIEHKNGLQRQKSLKIHSSGLQEKINMQCSSLKRFVKGQQPTVS
PLQQQAHALKRTKQTINSMLLVVVSFIVCVFINEILFLLTKQVLNITNLQ
WNSEIYQISVMLRFTNSCINPLIYGLKSKVFRDRLKEILRLSRKPRGLSE
TRFEEALKHGRSLSVFYVSSSSVKDGLEETKFNFLKN Run BLAST on NCBI transcript from alignment at scaffold_478:448507..450037- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068042 ID=TCONS_00068042|Name=TCONS_00068042|organism=Clytia hemisphaerica|type=transcript|length=1531bp|location=Sequence derived from alignment at scaffold_478:448507..450037- (Clytia hemisphaerica)
ACATAAAAAAGACCCGTTGTTTGTTACTAGACGAAATAATGGCTTACGCT
GGTAGCTTTCATATTCGCATATGGCAACTGATTTGGTATTGCGCCATTTG
TTTGTTTGGTACTCTTGGTAACAGTCTCATTATCTACTTAGCAACGGTCG
CTAAGAAGGGTGGCATTGATCGGAAAGCGCCCTTTAATATATATCTAGTC
GCCCTAGCGGTGACTGACTTCCTGGTTTGTCTATCCTCTCTACCAACCTA
CATCTTATCAACGAATATATTTTATCATCCGTCAAACGAAGGTGGACAAT
GGATGTGTAAATTACTGACTGGTTATTTTATACCATTTTGGTTTATGGAT
GTATCAGTGTTTCTACTAGCAGCTTTGGCGATTGAAAGATGGAGAGTCAT
TGTGAAGCCTTATGCGAAATTACGCAGACCAAAGTTGAGATCAACTCTTA
TGGTTATCACTATGGTAACGTTATTGGGAATCATAGCACAAGCTCCTATT
CTGTATGCTGCCCATTATGTTGGTTCAGAAATGGCTGATATAGGTAATTA
AGATAACTTCATCGGTGTTTTATCAGTTTAACAATTTTCGCTCTTTTGAA
ACCCAAATAACTTCTATAAAGATAACTATCAACTATTTTAGTTCTTTCCT
GGGTATTCCTAAAAGATAGGGTACCCTAATTGGGGTATGTTCTCACGAAT
TTCAGCCTAAATGTTCCTATAAACTGGTTTCTCATAAATCTTCTGTATCA
ATTTTCCAGGTAATGTCTGTTCATACACCCATCAAGACCTCGCCAGTAAA
CTTCTTCATTATAACCAATTGCTATTGGAAACAATCATTCCAACGTTAAT
CTTCTTTGTTTGCTTCTACCAAATGTACAAGACTTTATCCAAAAGAAAGC
AGACCCTTCGAACGCAGCTTACAGCCTACCAGCAGACTAGCATTTCCACA
GAGAAGCAACCAACATCAAGTAATAACAATGAAAAAAAGATTGAACACAA
AAACGGTCTACAAAGGCAAAAGAGTTTGAAAATCCATTCTTCAGGATTAC
AAGAGAAAATCAACATGCAGTGTAGCTCTCTTAAGAGATTTGTAAAAGGT
CAACAGCCTACAGTCTCGCCTCTGCAACAGCAAGCGCACGCTCTAAAACG
TACAAAGCAGACTATAAACAGTATGTTACTTGTGGTTGTTTCATTCATAG
TCTGTGTTTTCATCAACGAAATCCTGTTCTTGCTAACCAAGCAAGTTCTT
AATATCACAAACTTGCAATGGAATTCAGAAATTTATCAAATCAGTGTCAT
GTTACGTTTCACGAATTCGTGCATCAATCCCCTTATCTATGGTTTGAAAT
CGAAAGTGTTTAGAGATCGGCTGAAAGAGATTTTACGCTTGTCTAGAAAA
CCACGTGGGCTTAGTGAGACACGCTTTGAGGAAGCTCTGAAGCATGGCAG
ATCTCTATCAGTCTTTTATGTTTCGTCAAGTTCGGTGAAGGACGGTTTGG
AGGAGACAAAATTTAACTTTTTAAAAAATTG Coding sequence (CDS) from alignment at scaffold_478:448507..450037- >TCONS_00068042 ID=TCONS_00068042|Name=TCONS_00068042|organism=Clytia hemisphaerica|type=CDS|length=2622bp|location=Sequence derived from alignment at scaffold_478:448507..450037- (Clytia hemisphaerica)
GTAATGTCTGTTCATACACCCATCAAGACCTCGCCAGTAAACTTCTTCAT
TATAACCAATTGCTATTGGAAACAATCATTCCAACGTTAATCTTCTTTGT
TTGCTTCTACCAAATGTACAAGACTTTATCCAAAAGAAAGCAGACCCTTC
GAACGCAGCTTACAGCCTACCAGCAGACTAGCATTTCCACAGAGAAGCAA
CCAACATCAAGTAATAACAATGAAAAAAAGATTGAACACAAAAACGGTCT
ACAAAGGCAAAAGAGTTTGAAAATCCATTCTTCAGGATTACAAGAGAAAA
TCAACATGCAGTGTAGCTCTCTTAAGAGATTTGTAAAAGGTCAACAGCCT
ACAGTCTCGCCTCTGCAACAGCAAGCGCACGCTCTAAAACGTACAAAGCA
GACTATAAACAGTATGTTACTTGTGGTTGTTTCATTCATAGTCTGTGTTT
TCATCAACGAAATCCTGTTCTTGCTAACCAAGCAAGTTCTTAATATCACA
AACTTGCAATGGAATTCAGAAATTTATCAAATCAGTGTCATGTTACGTTT
CACGAATTCGTGCATCAATCCCCTTATCTATGGTTTGAAATCGAAAGTGT
TTAGAGATCGGCTGAAAGAGATTTTACGCTTGTCTAGAAAACCACGTGGG
CTTAGTGAGACACGCTTTGAGGAAGCTCTGAAGCATGGCAGATCTCTATC
AGTCTTTTATGTTTCGTCAAGTTCGGTGAAGGACGGTTTGGAGGAGACAA
AATTTAACTTTTTAAAAAATATAAAAAAGACCCGTTGTTTGTTACTAGAC
GAAATAATGGCTTACGCTGGTAGCTTTCATATTCGCATATGGCAACTGAT
TTGGTATTGCGCCATTTGTTTGTTTGGTACTCTTGGTAACAGTCTCATTA
TCTACTTAGCAACGGTCGCTAAGAAGGGTGGCATTGATCGGAAAGCGCCC
TTTAATATATATCTAGTCGCCCTAGCGGTGACTGACTTCCTGGTTTGTCT
ATCCTCTCTACCAACCTACATCTTATCAACGAATATATTTTATCATCCGT
CAAACGAAGGTGGACAATGGATGTGTAAATTACTGACTGGTTATTTTATA
CCATTTTGGTTTATGGATGTATCAGTGTTTCTACTAGCAGCTTTGGCGAT
TGAAAGATGGAGAGTCATTGTGAAGCCTTATGCGAAATTACGCAGACCAA
AGTTGAGATCAACTCTTATGGTTATCACTATGGTAACGTTATTGGGAATC
ATAGCACAAGCTCCTATTCTGTATGCTGCCCATTATGTTGGTTCAGAAAT
GGCTGATATAGGTAATGTCTGTTCATACACCCATCAAGACCTCGCCAGTA
AACTTCTTCATTATAACCAATTGCTATTGGAAACAATCATTCCAACGTTA
ATCTTCTTTGTTTGCTTCTACCAAATGTACAAGACTTTATCCAAAAGAAA
GCAGACCCTTCGAACGCAGCTTACAGCCTACCAGCAGACTAGCATTTCCA
CAGAGAAGCAACCAACATCAAGTAATAACAATGAAAAAAAGATTGAACAC
AAAAACGGTCTACAAAGGCAAAAGAGTTTGAAAATCCATTCTTCAGGATT
ACAAGAGAAAATCAACATGCAGTGTAGCTCTCTTAAGAGATTTGTAAAAG
GTCAACAGCCTACAGTCTCGCCTCTGCAACAGCAAGCGCACGCTCTAAAA
CGTACAAAGCAGACTATAAACAGTATGTTACTTGTGGTTGTTTCATTCAT
AGTCTGTGTTTTCATCAACGAAATCCTGTTCTTGCTAACCAAGCAAGTTC
TTAATATCACAAACTTGCAATGGAATTCAGAAATTTATCAAATCAGTGTC
ATGTTACGTTTCACGAATTCGTGCATCAATCCCCTTATCTATGGTTTGAA
ATCGAAAGTGTTTAGAGATCGGCTGAAAGAGATTTTACGCTTGTCTAGAA
AACCACGTGGGCTTAGTGAGACACGCTTTGAGGAAGCTCTGAAGCATGGC
AGATCTCTATCAGTCTTTTATGTTTCGTCAAGTTCGGTGAAGGACGGTTT
GGAGGAGACAAAATTTAACTTTTTAAAAAATATAAAAAAGACCCGTTGTT
TGTTACTAGACGAAATAATGGCTTACGCTGGTAGCTTTCATATTCGCATA
TGGCAACTGATTTGGTATTGCGCCATTTGTTTGTTTGGTACTCTTGGTAA
CAGTCTCATTATCTACTTAGCAACGGTCGCTAAGAAGGGTGGCATTGATC
GGAAAGCGCCCTTTAATATATATCTAGTCGCCCTAGCGGTGACTGACTTC
CTGGTTTGTCTATCCTCTCTACCAACCTACATCTTATCAACGAATATATT
TTATCATCCGTCAAACGAAGGTGGACAATGGATGTGTAAATTACTGACTG
GTTATTTTATACCATTTTGGTTTATGGATGTATCAGTGTTTCTACTAGCA
GCTTTGGCGATTGAAAGATGGAGAGTCATTGTGAAGCCTTATGCGAAATT
ACGCAGACCAAAGTTGAGATCAACTCTTATGGTTATCACTATGGTAACGT
TATTGGGAATCATAGCACAAGCTCCTATTCTGTATGCTGCCCATTATGTT
GGTTCAGAAATGGCTGATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068042-exon-scaffold_478-1575043694:449495..450037 | TCONS_00068042-exon-scaffold_478-1575043694:449495..450037 | Clytia hemisphaerica | exon |
| TCONS_00068042-exon-scaffold_478-1575043694:448507..449278 | TCONS_00068042-exon-scaffold_478-1575043694:448507..449278 | Clytia hemisphaerica | exon |
| TCONS_00068042-exon-scaffold_478-1510915933:449495..450037 | TCONS_00068042-exon-scaffold_478-1510915933:449495..450037 | Clytia hemisphaerica | exon |
| TCONS_00068042-exon-scaffold_478-1510915933:448507..449278 | TCONS_00068042-exon-scaffold_478-1510915933:448507..449278 | Clytia hemisphaerica | exon |
| TCONS_00068042-exon-scaffold_478-1491911889:449495..450037 | TCONS_00068042-exon-scaffold_478-1491911889:449495..450037 | Clytia hemisphaerica | exon |
| TCONS_00068042-exon-scaffold_478-1491911889:448507..449278 | TCONS_00068042-exon-scaffold_478-1491911889:448507..449278 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_478 | supercontig | scaffold_478:448507..450037 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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