|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068043 ID=TCONS_00068043|Name=TCONS_00068043|organism=Clytia hemisphaerica|type=transcript|length=468bp
TGGTCGACCGAACGCCATCATAGAAAATTATGAAGTTTTCAGTGGACTCT
CCAAAGGCTTTTTGTTAGAAACAATCCCTTGCTTATCAAAACAATGGCGT
TTTACATTGGTCATCAAACCCACTGGAATCTATAAGCCCTGGTATACAAA
CATCATGCAAGCAACTATCGGGGAGAGCAATTCCAAATATGGTGATCGTG
TTCCTTTAGTCTCCTTCAGACCAGATTCTACTAAACTTCATGTTTGTTCG
GCTATCAATGGCAAGGTCAACGAGTGCAGAGACGATGATGAAGATCTTAC
CATGAATACAGATTCGACAGTTATCGTGGAACAAAAACTCATCTCGGGTG
ATTACTACTTTAGCGTCAAAGTCAATGGCGTTGATATGTTCCCCCCATTC
AAAAATGAGGGTGCCAACGAATTCAAGAATGTCAAAGTCTATACATCACA
TCCTTGGAGTGAGCCCGC Run BLAST on NCBI protein sequence of TCONS_00068043-protein >TCONS_00068043-protein ID=TCONS_00068043-protein|Name=TCONS_00068043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
GRPNAIIENYEVFSGLSKGFLLETIPCLSKQWRFTLVIKPTGIYKPWYTN
IMQATIGESNSKYGDRVPLVSFRPDSTKLHVCSAINGKVNECRDDDEDLT
MNTDSTVIVEQKLISGDYYFSVKVNGVDMFPPFKNEGANEFKNVKVYTSH
PWSEP Run BLAST on NCBI transcript from alignment at scaffold_478:564806..567050- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068043 ID=TCONS_00068043|Name=TCONS_00068043|organism=Clytia hemisphaerica|type=transcript|length=2245bp|location=Sequence derived from alignment at scaffold_478:564806..567050- (Clytia hemisphaerica)
TGGTCGACCGAACGCCATCATAGAAAATTATGAAGTTTTCAGTGGTAAGT
TTGAGATTTCTTTAGGCTCAGATGAAAGACTTATTCCCCAATGGTGTATA
TGCTCGAAAGGCTACAATCATGGTCAGAATATGTTGAAATTCTGGGTATT
ATAGGATTTTGTAGAATTAAAAGTTCCGACGAGAATGACATTTTCAGGCT
TTCTTCTTTATCTAATCAAATATTTCGATTTGGGAGGGGTACAGTGGCTT
CCAGTACTATATTCTCAGCCTAGTGAGTGGGACCACTCCCAAGCTTTTGG
ATCCTCAGATCCTAAGGTCCTATGATGGTGGTAATGTTAAAAGTGATCTT
ATGACAATTTTTAGTATTCAATTCAAAGAAATTTTACGGATAAGACCTTT
TCAAATTTCTATTGGGACTTAATTTGGATGACACTCAAATCCACGAAAGA
CACGAAATTTAAAGTATCAAAGTCTTCGTTTCATCCCATAGGACTCTCCA
AAGGCTTTTTGTTAGAAACAATCCCTTGCTTATCAAAACAATGGCGTTTT
ACATTGGTCATCAAACCCACTGGAATCTATAAGCCCTGGTATACAAACAT
CATGCAAGCAACTATCGGGGAGAGCAATTCCAAATATGGTGATCGTGTTC
CTTTAGTCTCCTTCAGACCAGATTCTACTAAACTTCATGTTTGTTCGGCT
ATCAATGGCAAGGTATGTAATAGTCTGAATCTGTAGATATACTTCCTTTA
CATATATAAGAAACTCTTTTCGCTAGAGTTCGAGCAGAAGCCTATAGATA
TGTACAGGAGTTTTATTTACCCCCTGCATCAGTAAGATTCTCGAATGGCA
GTAAATCGGACACAGTTTAAAATAAGCGAATATAAAATAAACGGGACAAA
ATTGTTGTCAGTTTGAACAGAATGATTTTATCTCGTAACAACTATCGCGT
AAGCATGTTACATGATAGCGAGTATGTCACTAAAAACCATTCAATCCGGA
ATGTTAATTGCGTAGAAAAAACGTGGGTGACGTCTAGTACTTTAGGCGTA
CAAACTTTCGCGAGCAGAAACTTTCGCGATTTTCGCGAATTTTGGCCCTT
TTCGCGAAAGTAAATGTATTTAAAAATTCTAGGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCGAAAGTTTATGCTCGCGA
AAAATTCTTGAAAAAATAGAAAATCTGTAAAACTTCAAACTTTGAATAAA
ATGTAACTTTTATGGTACTTTTTTGCCTGCTAAAAGACTAATAAGTCAAA
GGACAAATGTTTCAAGACAATCCAAGAAGTATTTGTCCCTCCAAGCCATT
TTTTCATGTGAAAATTCTCAATTTTACGTCTTGATTGGCGAAAGTTTATG
CTCGCGAAAAATATTTTTCCGTTAAATTCGCGAAAGTAAATGTCGTGAAT
TTTGCGATTTTTCGGCCTCGCGAAAGTTTCTGCTCGCGAAAGTTTGTACG
CCTAAAGTATAGGCTAGTTACATGAAAATGAAAATTTTGCAGTAAACAGT
TCTTCTTAAGATTACAATTATGCGGTAGTTTTTTCCTGAACTAGCATATT
TCCTTGAGAATGAAAAATTGAAAGTGTCCGAGTTTTGTGTTCTAAGAGGT
TAAAGTAAAATTTTGCCTTCAATCTTATTAAATATACCCTTAACGTATAA
TCATAGCCGGGAATCATAGCTTTCTACAGTAGCCTATACAAGGGGGCGCA
AAATTTGTGTAGGAGAGCAATTTTTATGACACAGCAATTATCATTTCATA
TTATGAAAAGATAATTACAGTGTCATAAAAATCTCCTCTCCTACACAAAT
TTTGCGTACCTCCTGTCTACGCTACTGTTCTAGATATACTTGGAATGTAT
ATAACAATTTTTTGAATTCTAAATTTCTTCATCTTTTTAAAGGTCAACGA
GTGCAGAGACGATGATGAAGATCTTACCATGAATACAGATTCGACAGTTA
TCGTGGAACAAAAACTCATCTCGGGTGATTACTACTTTAGCGTCAAAGTC
AATGGCGTTGATATGTTCCCCCCATTCAAAAATGAGGGTGCCAACGAATT
CAAGAATGTCAAAGTCTATACATCACATCCTTGGAGTGAGCCCGC Coding sequence (CDS) from alignment at scaffold_478:564806..567050- >TCONS_00068043 ID=TCONS_00068043|Name=TCONS_00068043|organism=Clytia hemisphaerica|type=CDS|length=1395bp|location=Sequence derived from alignment at scaffold_478:564806..567050- (Clytia hemisphaerica)
GTCAACGAGTGCAGAGACGATGATGAAGATCTTACCATGAATACAGATTC
GACAGTTATCGTGGAACAAAAACTCATCTCGGGTGATTACTACTTTAGCG
TCAAAGTCAATGGCGTTGATATGTTCCCCCCATTCAAAAATGAGGGTGCC
AACGAATTCAAGAATGTCAAAGTCTATACATCACATCCTTGGAGTGAGCC
CGACTCTCCAAAGGCTTTTTGTTAGAAACAATCCCTTGCTTATCAAAACA
ATGGCGTTTTACATTGGTCATCAAACCCACTGGAATCTATAAGCCCTGGT
ATACAAACATCATGCAAGCAACTATCGGGGAGAGCAATTCCAAATATGGT
GATCGTGTTCCTTTAGTCTCCTTCAGACCAGATTCTACTAAACTTCATGT
TTGTTCGGCTATCAATGGCAAGGGTCGACCGAACGCCATCATAGAAAATT
ATGAAGTTTTCAGTGGTCAACGAGTGCAGAGACGATGATGAAGATCTTAC
CATGAATACAGATTCGACAGTTATCGTGGAACAAAAACTCATCTCGGGTG
ATTACTACTTTAGCGTCAAAGTCAATGGCGTTGATATGTTCCCCCCATTC
AAAAATGAGGGTGCCAACGAATTCAAGAATGTCAAAGTCTATACATCACA
TCCTTGGAGTGAGCCCGACTCTCCAAAGGCTTTTTGTTAGAAACAATCCC
TTGCTTATCAAAACAATGGCGTTTTACATTGGTCATCAAACCCACTGGAA
TCTATAAGCCCTGGTATACAAACATCATGCAAGCAACTATCGGGGAGAGC
AATTCCAAATATGGTGATCGTGTTCCTTTAGTCTCCTTCAGACCAGATTC
TACTAAACTTCATGTTTGTTCGGCTATCAATGGCAAGGGTCGACCGAACG
CCATCATAGAAAATTATGAAGTTTTCAGTGGTCAACGAGTGCAGAGACGA
TGATGAAGATCTTACCATGAATACAGATTCGACAGTTATCGTGGAACAAA
AACTCATCTCGGGTGATTACTACTTTAGCGTCAAAGTCAATGGCGTTGAT
ATGTTCCCCCCATTCAAAAATGAGGGTGCCAACGAATTCAAGAATGTCAA
AGTCTATACATCACATCCTTGGAGTGAGCCCGACTCTCCAAAGGCTTTTT
GTTAGAAACAATCCCTTGCTTATCAAAACAATGGCGTTTTACATTGGTCA
TCAAACCCACTGGAATCTATAAGCCCTGGTATACAAACATCATGCAAGCA
ACTATCGGGGAGAGCAATTCCAAATATGGTGATCGTGTTCCTTTAGTCTC
CTTCAGACCAGATTCTACTAAACTTCATGTTTGTTCGGCTATCAATGGCA
AGGGTCGACCGAACGCCATCATAGAAAATTATGAAGTTTTCAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068043-exon-scaffold_478-1575043694:567007..567050 | TCONS_00068043-exon-scaffold_478-1575043694:567007..567050 | Clytia hemisphaerica | exon |
| TCONS_00068043-exon-scaffold_478-1575043694:566339..566559 | TCONS_00068043-exon-scaffold_478-1575043694:566339..566559 | Clytia hemisphaerica | exon |
| TCONS_00068043-exon-scaffold_478-1575043694:564806..565008 | TCONS_00068043-exon-scaffold_478-1575043694:564806..565008 | Clytia hemisphaerica | exon |
| TCONS_00068043-exon-scaffold_478-1510915933:567007..567050 | TCONS_00068043-exon-scaffold_478-1510915933:567007..567050 | Clytia hemisphaerica | exon |
| TCONS_00068043-exon-scaffold_478-1510915933:566339..566559 | TCONS_00068043-exon-scaffold_478-1510915933:566339..566559 | Clytia hemisphaerica | exon |
| TCONS_00068043-exon-scaffold_478-1510915933:564806..565008 | TCONS_00068043-exon-scaffold_478-1510915933:564806..565008 | Clytia hemisphaerica | exon |
| TCONS_00068043-exon-scaffold_478-1491911889:567007..567050 | TCONS_00068043-exon-scaffold_478-1491911889:567007..567050 | Clytia hemisphaerica | exon |
| TCONS_00068043-exon-scaffold_478-1491911889:566339..566559 | TCONS_00068043-exon-scaffold_478-1491911889:566339..566559 | Clytia hemisphaerica | exon |
| TCONS_00068043-exon-scaffold_478-1491911889:564806..565008 | TCONS_00068043-exon-scaffold_478-1491911889:564806..565008 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_478 | supercontig | scaffold_478:564806..567050 - |
Blast
The following BLAST results are available for this feature:
|
