TCONS_00068077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068077
Unique NameTCONS_00068077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1019

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068077 ID=TCONS_00068077|Name=TCONS_00068077|organism=Clytia hemisphaerica|type=transcript|length=1019bp
AATTTCAACAGAAACTGTATTTTAGTAAGGTAGGTTACCCTTTTATGGAC
ACCCCCTATTATAGACAAACCCTTCTAAAATATTACAGTGCACGTAGTGT
TCATATTATATCATGATAATTTGTAtagaaatgttatttttttatttttg
atataaaataagtaaaaaagtaaaaatcagacagaaaatgtcgaaaaaaa
aaattgacattatAAACTTTAAAATAATGCACTTGTGGATCTGTATTGTC
TCTTAACAGCATCAAAGTAATTTATTTGACTAATGATTGGTGATGAAATT
ATGGTAAAATAGTGTTTCAAATGGGCGGGTCCACCCATTCTCTAACATGG
ATGTTTGTTACCTATTATGAACAGGTGGATGTttccaaccaaaaaagccc
aaaacATGCGCCAAGGTCACAAAACACAGTCTGCGTCCAGATGTgtgaac
aataaaaaaataatatgtgaTGGTCGTCATTTTATCCAGTGTTCTGGCGG
CAATCAAAtatatgttccgttcgcgtcaaaaatcttcataaaatagagtc
agtcagtcggtcggttttttggaaaatggtttcaaagtatAGTTTTTAAT
ATCGCTCGCTTGATGAAAAATTCTGACAATTTTCTGACTCCTCCAGCATT
TTTGTCTGCCAAGTTGGTCGGATTGGTTGGCCGACGCAAACAGCCTGcgc
gaacagaacatatttttgatggTCTTCCTCTGCTGTTGTTGTAGCCAAAC
ACACCAGTGCAGTATGGATTCCACAAAATCTAgcgccgaagatatttttc
cgtacagcaagcctcacgccaagcaaaatttcttttgtaccagcattcaa
tttttcaataaccttgggtgcaagatgggaaaagaggcgcatgcgccaac
ataTAAAAATCAATGGATTgtggagtcattcacgccgagctggaattatt
actttacaccaactgaaaatcaaacaatctttgtaagtacccttaaaCCA
ATGCGTCAAAAACGTTTCA
Run BLAST on NCBI

protein sequence of TCONS_00068077-protein

>TCONS_00068077-protein ID=TCONS_00068077-protein|Name=TCONS_00068077-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MVFLCCCCSQTHQCSMDSTKSSAEDIFPYSKPHAKQNFFCTSIQFFNNLG
CKMGKEAHAPTYKNQWIVESFTPSWNYYFTPTENQTIFVSTLKPMRQKRF
Run BLAST on NCBI

transcript from alignment at scaffold_479:2352..3434+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068077 ID=TCONS_00068077|Name=TCONS_00068077|organism=Clytia hemisphaerica|type=transcript|length=1083bp|location=Sequence derived from alignment at scaffold_479:2352..3434+ (Clytia hemisphaerica)
AATTTCAACAGAAACTGTATTTTAGTAAGGTAGGTTACCCTTTTATGGAC
ACCCCCTATTATAGACAAACCCTTCTAAAATATTACAGTGCACGTAGTGT
TCATATTATATCATGATAATTTGTAtagaaatgttatttttttatttttg
atataaaataagtaaaaaagtaaaaatcagacagaaaatgtcgaaaaaaa
aaattgacattatAAACTTTAAAATAATGCACTTGTGGATCTGTATTGTC
TCTTAACAGCATCAAAGTAATTTATTTGACTAATGATTGGTGATGAAATT
ATGGTAAAATAGTGTTTCAAATGGGCGGGTCCACCCATTCTCTAACATGG
ATGTTTGTTACCTATTATGAACAGGTGGATGTttccaaccaaaaaagccc
aaaacATGCGCCAAGGTCACAAAACACAGTCTGCGTCCAGATGTgtgaac
aataaaaaaataatatgtgaTGGTCGTCATTTTATCCAGTGTTCTGGCGG
CAATCAAAtatatgttccgttcgcgtcaaaaatcttcataaaatagagtc
agtcagtcggtcggtagtaaatctagtcaggttttttggaaaatggtttc
aaagtatAGTTTAGTAAATCTAGTcaggttttttggaaaatggtttcaaa
gtatAGTTTTTAATATCGCTCGCTTGATGAAAAATTCTGACAATTTTCTG
ACTCCTCCAGCATTTTTGTCTGCCAAGTTGGTCGGATTGGTTGGCCGACG
CAAACAGCCTGcgcgaacagaacatatttttgatggTCTTCCTCTGCTGT
TGTTGTAGCCAAACACACCAGTGCAGTATGGATTCCACAAAATCTAgcgc
cgaagatatttttccgtacagcaagcctcacgccaagcaaaatttctttt
gtaccagcattcaatttttcaataaccttgggtgcaagatgggaaaagag
gcgcatgcgccaacataTAAAAATCAATGGATTgtggagtcattcacgcc
gagctggaattattactttacaccaactgaaaatcaaacaatctttgtaa
gtacccttaaaCCAATGCGTCAAAAACGTTTCA

Coding sequence (CDS) from alignment at scaffold_479:2352..3434+

>TCONS_00068077 ID=TCONS_00068077|Name=TCONS_00068077|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_479:2352..3434+ (Clytia hemisphaerica)
atggTCTTCCTCTGCTGTTGTTGTAGCCAAACACACCAGTGCAGTATGGA
TTCCACAAAATCTAgcgccgaagatatttttccgtacagcaagcctcacg
ccaagcaaaatttcttttgtaccagcattcaatttttcaataaccttggg
tgcaagatgggaaaagaggcgcatgcgccaacataTAAAAATCAATGGAT
Tgtggagtcattcacgccgagctggaattattactttacaccaactgaaa
atcaaacaatctttgtaagtacccttaaaCCAATGCGTCAAAAACGTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042504XLOC_042504Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068077-proteinTCONS_00068077-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068077-exon-scaffold_479-1491911889:2352..2914TCONS_00068077-exon-scaffold_479-1491911889:2352..2914Clytia hemisphaericaexon
TCONS_00068077-exon-scaffold_479-1510915933:2352..2914TCONS_00068077-exon-scaffold_479-1510915933:2352..2914Clytia hemisphaericaexon
TCONS_00068077-exon-scaffold_479-1575043694:2352..2914TCONS_00068077-exon-scaffold_479-1575043694:2352..2914Clytia hemisphaericaexon
TCONS_00068077-exon-scaffold_479-1491911889:2979..3434TCONS_00068077-exon-scaffold_479-1491911889:2979..3434Clytia hemisphaericaexon
TCONS_00068077-exon-scaffold_479-1510915933:2979..3434TCONS_00068077-exon-scaffold_479-1510915933:2979..3434Clytia hemisphaericaexon
TCONS_00068077-exon-scaffold_479-1575043694:2979..3434TCONS_00068077-exon-scaffold_479-1575043694:2979..3434Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_479supercontigscaffold_479:2352..3434 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.739367	0.985547	0.691086	1.12134	1.28357	1.37867	2.79865	2.99086	1.63398	2.03487	1.58837	1.29759	1.44586	1.43228	5.0149	2.1909	0.816389	1.21697	1.908	1.78193	1.2905	1.23201	0.993156	1.44902	1.73166	1.21426	3.18178	3.34743	2.46615	1.43944
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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