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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068100 ID=TCONS_00068100|Name=TCONS_00068100|organism=Clytia hemisphaerica|type=transcript|length=2171bp
CGAAAGTTCTCATCTTACAATATTCTCTACTCTTTTTTATGGAATATTGA
CATGGATATACAGTCACACAGTTTTGTTATGTGTGTTTAGCCTTTGAAAG
AATCATTCTTTTCTTCTCAACGCTTTCTTAGTCAAAGCCTCTTGTTTGTC
ATCTATTTTTGTTGAATGTTTTGCTTTGATACGAAGTGACTACACAGTCA
GCTTCTGTGTGTTGATTTTATTGAGGGGTCATCATATCGCTTTCAAAAAA
ACACAGAACATTTAACTGTCgagagaaagaggaaaaaaatggAACGATAG
ATATTTTGATTATATTGTAAATTTCAAATAGCTGATTTCTCGAATTCTTA
TTTGTAGGAATAATCTGTCATCTTCAATGTGGACAAGGATGTGGCTTGGT
CTACTCACCATCCTTCTCTTACCCTGTCTTCACCTGGTGAAAGGCCAAGA
ATGGGGTAACTGTTATGATGAAGGTGGTGAGACAGCTTGCTACTACTGGC
AAATGAACGGTATGTGTCATCAAGCAGGTTACCGAAGCTATATGTACCAG
ATTTGTAGACGGACCTGTAATCTATGTCCTTCAATTTTGATCACGCCTTA
TCCTCGACCAACGAAGAAAATCGCTTACAAACCATGTCACGATATCCGTA
TAAAATGTCCTTCATGGAAAGAATACTGTCAACCAGGCAATGAATATTTC
AGTTTCATGAAGAAGCATTGTCGACGGTCTTGTCTCTTCTGCGCAGATCC
GAACTGTAAGGATTTGAACGTGCGCTGTCCAAGATATAAAGCGTCCGGTT
ATTGTCATCATGATCATCGATACCATAATTACATGCGTAAAAATTGTGCC
AAAGCTTGTCAATTTTGCGTCAGAGAGGATAAAGATATCGTCCAAAATGG
CGGTAGGAAACCTACTTTGAAAAAGATTCGAAGATATTTTGAATGTGATT
TTGAGAAGGATGAATGTGATTGGTGGAATCAACCCTTCGGAGATACGGGA
GATTGGGCCGTTGGAATAAACAAAAACGGCCCACAACAAGGCTATAATGG
TTCTTCCAAATATTTATATGTGAACGTCCCTTACAGAGGCTATAGAGCTA
AACTTTGGTTGCCATGGCAATTGGTATTACCTGAAGGTGGATTAAAGTCT
TACGGAGAGatgtgttttcattttgtttatcaaatcacaCATGGACGACT
GACAGTTCACGAGAAAGCACAACCTAGCATGGCTGCAAAGCACCCCAACC
CTAGGACTTTGATGGAGACGCTAGACTATAAACATAAGTGGACGAAGGCT
AAATTGACCGTCAAAGTAGAGCCTCAATCATCACTCACCATTATCGGACA
ACAGGGTGTCTCAACATCTTTTGTTGCCTTGGATAATTTTTATTTCACAG
AGGGTCGATGTTGatgttgtttttaatttgtatAGTCTAAAAGTTTTGAT
AGAATTCTTTAATTTATAGAAACATTTTTACTACTGCTCAAATATCTCGC
AGTTATCGTTATATCTGATCTGTGTTTTATACACCCTTGGTTTTACTTTC
CTAGGGTGATTCTTTCTGACTTCGGCAAACCTTTGATAAACTATGAGAAA
AAGTAAGGAATTGGCTAGAGATGATTAGTTCCTTGTAAATGTTGCTTCaa
aattgtattcaatttcCAAGTACACCTCTGCGTCATAAACCCGCTTGGAC
Cctagccccactgaaaaatttggcagaaaattcgtccccggtgggaaaaa
actCTGGAGTTTCAGCCCCATTGAAAAATTGTCTTTAaattcatccccat
ttgaaattcaatgtttaaaaattgcaggAACATTTATCctccactgagga
aaaaagttctacTGGGGCTGTGATATAGGGGTGTGCAGGTACATTCAATT
CAATTCGGTCTTTCCGTAAAAAACGATTACATTGCCGGTAggtacaaaga
ataaaaatatataataaaatatcTCCCGACGAAAGGAATTGAAGCATTAT
TTTCTATCGAAAAGAAGcagtagaaaaaagttttataaGTATAACTAACG
ATTTATGATAATGTTCCACTCCTTAGtgttttttgcaatttccattGCGC
CGTCCCATTCAATATTTAATGTTTTAAGATCATTTTTGACAACACTGAGC
CAAGTTGTAGTTGGTTTCCCT Run BLAST on NCBI transcript from alignment at scaffold_48:80475..82645+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068100 ID=TCONS_00068100|Name=TCONS_00068100|organism=Clytia hemisphaerica|type=transcript|length=2171bp|location=Sequence derived from alignment at scaffold_48:80475..82645+ (Clytia hemisphaerica)
CGAAAGTTCTCATCTTACAATATTCTCTACTCTTTTTTATGGAATATTGA
CATGGATATACAGTCACACAGTTTTGTTATGTGTGTTTAGCCTTTGAAAG
AATCATTCTTTTCTTCTCAACGCTTTCTTAGTCAAAGCCTCTTGTTTGTC
ATCTATTTTTGTTGAATGTTTTGCTTTGATACGAAGTGACTACACAGTCA
GCTTCTGTGTGTTGATTTTATTGAGGGGTCATCATATCGCTTTCAAAAAA
ACACAGAACATTTAACTGTCgagagaaagaggaaaaaaatggAACGATAG
ATATTTTGATTATATTGTAAATTTCAAATAGCTGATTTCTCGAATTCTTA
TTTGTAGGAATAATCTGTCATCTTCAATGTGGACAAGGATGTGGCTTGGT
CTACTCACCATCCTTCTCTTACCCTGTCTTCACCTGGTGAAAGGCCAAGA
ATGGGGTAACTGTTATGATGAAGGTGGTGAGACAGCTTGCTACTACTGGC
AAATGAACGGTATGTGTCATCAAGCAGGTTACCGAAGCTATATGTACCAG
ATTTGTAGACGGACCTGTAATCTATGTCCTTCAATTTTGATCACGCCTTA
TCCTCGACCAACGAAGAAAATCGCTTACAAACCATGTCACGATATCCGTA
TAAAATGTCCTTCATGGAAAGAATACTGTCAACCAGGCAATGAATATTTC
AGTTTCATGAAGAAGCATTGTCGACGGTCTTGTCTCTTCTGCGCAGATCC
GAACTGTAAGGATTTGAACGTGCGCTGTCCAAGATATAAAGCGTCCGGTT
ATTGTCATCATGATCATCGATACCATAATTACATGCGTAAAAATTGTGCC
AAAGCTTGTCAATTTTGCGTCAGAGAGGATAAAGATATCGTCCAAAATGG
CGGTAGGAAACCTACTTTGAAAAAGATTCGAAGATATTTTGAATGTGATT
TTGAGAAGGATGAATGTGATTGGTGGAATCAACCCTTCGGAGATACGGGA
GATTGGGCCGTTGGAATAAACAAAAACGGCCCACAACAAGGCTATAATGG
TTCTTCCAAATATTTATATGTGAACGTCCCTTACAGAGGCTATAGAGCTA
AACTTTGGTTGCCATGGCAATTGGTATTACCTGAAGGTGGATTAAAGTCT
TACGGAGAGatgtgttttcattttgtttatcaaatcacaCATGGACGACT
GACAGTTCACGAGAAAGCACAACCTAGCATGGCTGCAAAGCACCCCAACC
CTAGGACTTTGATGGAGACGCTAGACTATAAACATAAGTGGACGAAGGCT
AAATTGACCGTCAAAGTAGAGCCTCAATCATCACTCACCATTATCGGACA
ACAGGGTGTCTCAACATCTTTTGTTGCCTTGGATAATTTTTATTTCACAG
AGGGTCGATGTTGatgttgtttttaatttgtatAGTCTAAAAGTTTTGAT
AGAATTCTTTAATTTATAGAAACATTTTTACTACTGCTCAAATATCTCGC
AGTTATCGTTATATCTGATCTGTGTTTTATACACCCTTGGTTTTACTTTC
CTAGGGTGATTCTTTCTGACTTCGGCAAACCTTTGATAAACTATGAGAAA
AAGTAAGGAATTGGCTAGAGATGATTAGTTCCTTGTAAATGTTGCTTCaa
aattgtattcaatttcCAAGTACACCTCTGCGTCATAAACCCGCTTGGAC
Cctagccccactgaaaaatttggcagaaaattcgtccccggtgggaaaaa
actCTGGAGTTTCAGCCCCATTGAAAAATTGTCTTTAaattcatccccat
ttgaaattcaatgtttaaaaattgcaggAACATTTATCctccactgagga
aaaaagttctacTGGGGCTGTGATATAGGGGTGTGCAGGTACATTCAATT
CAATTCGGTCTTTCCGTAAAAAACGATTACATTGCCGGTAggtacaaaga
ataaaaatatataataaaatatcTCCCGACGAAAGGAATTGAAGCATTAT
TTTCTATCGAAAAGAAGcagtagaaaaaagttttataaGTATAACTAACG
ATTTATGATAATGTTCCACTCCTTAGtgttttttgcaatttccattGCGC
CGTCCCATTCAATATTTAATGTTTTAAGATCATTTTTGACAACACTGAGC
CAAGTTGTAGTTGGTTTCCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068100-exon-scaffold_48-1491911889:80475..82645 | TCONS_00068100-exon-scaffold_48-1491911889:80475..82645 | Clytia hemisphaerica | exon |
| TCONS_00068100-exon-scaffold_48-1510915933:80475..82645 | TCONS_00068100-exon-scaffold_48-1510915933:80475..82645 | Clytia hemisphaerica | exon |
| TCONS_00068100-exon-scaffold_48-1575043694:80475..82645 | TCONS_00068100-exon-scaffold_48-1575043694:80475..82645 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:80475..82645 + |
Blast
The following BLAST results are available for this feature:
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