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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068104 ID=TCONS_00068104|Name=TCONS_00068104|organism=Clytia hemisphaerica|type=transcript|length=1814bp
CCTATACTACATTATATACATTATATGAGAAACCTTCTGTTCATGGTTGT
TCTTTTTTAGCATTAAGATAGTACCTCTTTGATACTTTAGAAATTCCTCT
TTGTaacgaaaaatttcatttccttTTTCAGTAGTTGTTTGGGAGAACGG
GACGACCTATTCACTCAGTCTCACATATTAATTACTCCATCTGTTCGGGC
TGgaaataatagaccttttttcaaagaggccaccctgttgaataattatg
tagtccagcagaaaaacaatgataaaaccatgcataattattacaatatg
catgatatagtaattatgcatggctatctatcattgtttttatggctgga
ctacataattattcaacaggacgtcctctttgaaaaaaggtctatctgCT
CCGAATTATGGAAATAAATGCTAATACTCGTGCTAATACCGGGTGtgtca
caaaaaagtttctctctttgaaactgattttcttgaaatctaaaaaattt
aaaagtaacATGCCTATTCCCGGGGAGTCATCAAAAGTCCGACACTTTCT
CGTCCGACAGCTAGAAATTCCGACAATGCAATCAAAGATTGCGCTAGTTT
TCCAACATAGATTTTGTCCGACAACAAGTGATGAAAAGAATTAGTGTTTC
CACAAAAAACATTAGTAGCCTGCCAACCATGTGAATTGTTTATTTGATCA
CTTTGTTATTATAGCAGGTGAAAGGCTGTGTTCGTCTGGTATAGGTTTAA
ACAACTTATCTCCAAAGAAAACTTGTTCTTTTTAGCCGtaatttataaat
aaaatacgaCTCATCAAAGATTGTGTGACTGTTTTCAGACAAAAAGCAGT
CAGAGTAGACAACTGGACTGTTTTGCTGTCGGACTAGTAAGGTGCACCCG
CCTATtccattgaaaagaagaaggataaacttaaattttgatgggtcttt
tattaaaattggttcattagatcaaaatttatgctcaattgaataaaaaa
gttacattCAGAGAGTGCCCGAAAACATTGAAATCGgcctttcttctttt
caatagaataggaatggttcttttaaaatttttatatttcatgAAAACTA
GTTTTAGAAAGAGAGCGTGCCGTCTGGTACTTTATAGGACGTTCGCAGAG
TTATCCTGTGCTAATTCGAGAGATCGTTAGCGTGCCAATTTGAATAAAAC
TTAAGGTAAATTCTGATTTTCCGCTTTTTTTACTTGCATCCACGGaagtg
tggagtaattagttaccGTGAAGTGGGGTAACTTGCATTACACTTGCACT
TTgtgttttaatgaccagacaggtcattcatttgagggctatgcatgttt
gcctccactgatgcaagttacccgatctcacagtaTGCAATAGTTCATCG
CGTTCTTCCAAACAACTATAGTTATGGGTCACtgcttttttggacctact
ataaattaacctttgtccgtttgtctgttcgtccgtccatccgtctgtta
ccagcttttcttgagataagctcattagtttttttctgattttgatgcca
gaaatatgctggaaatcatgatttttcaagattttcattggactttttca
cgtcaaaacatttttgataacaatgctcaccatcaagcataaaactgatt
tttgaagccggaactttctaaaaatcgcgaGAAAAACGGTTTCTCTTGAA
TTTGTCAaactgtactttatattttttaataataataaatctCTTTTACC
ACCTATAAGACATATAAGACTATAAGGTACATCTaaggaaaaatatatat
atatctttATGAAT Run BLAST on NCBI transcript from alignment at scaffold_48:90184..91997+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068104 ID=TCONS_00068104|Name=TCONS_00068104|organism=Clytia hemisphaerica|type=transcript|length=1814bp|location=Sequence derived from alignment at scaffold_48:90184..91997+ (Clytia hemisphaerica)
CCTATACTACATTATATACATTATATGAGAAACCTTCTGTTCATGGTTGT
TCTTTTTTAGCATTAAGATAGTACCTCTTTGATACTTTAGAAATTCCTCT
TTGTaacgaaaaatttcatttccttTTTCAGTAGTTGTTTGGGAGAACGG
GACGACCTATTCACTCAGTCTCACATATTAATTACTCCATCTGTTCGGGC
TGgaaataatagaccttttttcaaagaggccaccctgttgaataattatg
tagtccagcagaaaaacaatgataaaaccatgcataattattacaatatg
catgatatagtaattatgcatggctatctatcattgtttttatggctgga
ctacataattattcaacaggacgtcctctttgaaaaaaggtctatctgCT
CCGAATTATGGAAATAAATGCTAATACTCGTGCTAATACCGGGTGtgtca
caaaaaagtttctctctttgaaactgattttcttgaaatctaaaaaattt
aaaagtaacATGCCTATTCCCGGGGAGTCATCAAAAGTCCGACACTTTCT
CGTCCGACAGCTAGAAATTCCGACAATGCAATCAAAGATTGCGCTAGTTT
TCCAACATAGATTTTGTCCGACAACAAGTGATGAAAAGAATTAGTGTTTC
CACAAAAAACATTAGTAGCCTGCCAACCATGTGAATTGTTTATTTGATCA
CTTTGTTATTATAGCAGGTGAAAGGCTGTGTTCGTCTGGTATAGGTTTAA
ACAACTTATCTCCAAAGAAAACTTGTTCTTTTTAGCCGtaatttataaat
aaaatacgaCTCATCAAAGATTGTGTGACTGTTTTCAGACAAAAAGCAGT
CAGAGTAGACAACTGGACTGTTTTGCTGTCGGACTAGTAAGGTGCACCCG
CCTATtccattgaaaagaagaaggataaacttaaattttgatgggtcttt
tattaaaattggttcattagatcaaaatttatgctcaattgaataaaaaa
gttacattCAGAGAGTGCCCGAAAACATTGAAATCGgcctttcttctttt
caatagaataggaatggttcttttaaaatttttatatttcatgAAAACTA
GTTTTAGAAAGAGAGCGTGCCGTCTGGTACTTTATAGGACGTTCGCAGAG
TTATCCTGTGCTAATTCGAGAGATCGTTAGCGTGCCAATTTGAATAAAAC
TTAAGGTAAATTCTGATTTTCCGCTTTTTTTACTTGCATCCACGGaagtg
tggagtaattagttaccGTGAAGTGGGGTAACTTGCATTACACTTGCACT
TTgtgttttaatgaccagacaggtcattcatttgagggctatgcatgttt
gcctccactgatgcaagttacccgatctcacagtaTGCAATAGTTCATCG
CGTTCTTCCAAACAACTATAGTTATGGGTCACtgcttttttggacctact
ataaattaacctttgtccgtttgtctgttcgtccgtccatccgtctgtta
ccagcttttcttgagataagctcattagtttttttctgattttgatgcca
gaaatatgctggaaatcatgatttttcaagattttcattggactttttca
cgtcaaaacatttttgataacaatgctcaccatcaagcataaaactgatt
tttgaagccggaactttctaaaaatcgcgaGAAAAACGGTTTCTCTTGAA
TTTGTCAaactgtactttatattttttaataataataaatctCTTTTACC
ACCTATAAGACATATAAGACTATAAGGTACATCTaaggaaaaatatatat
atatctttATGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068104-exon-scaffold_48-1491911889:90184..91997 | TCONS_00068104-exon-scaffold_48-1491911889:90184..91997 | Clytia hemisphaerica | exon |
| TCONS_00068104-exon-scaffold_48-1510915933:90184..91997 | TCONS_00068104-exon-scaffold_48-1510915933:90184..91997 | Clytia hemisphaerica | exon |
| TCONS_00068104-exon-scaffold_48-1575043694:90184..91997 | TCONS_00068104-exon-scaffold_48-1575043694:90184..91997 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:90184..91997 + |
Blast
The following BLAST results are available for this feature:
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