TCONS_00068110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068110
Unique NameTCONS_00068110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4290

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068110 ID=TCONS_00068110|Name=TCONS_00068110|organism=Clytia hemisphaerica|type=transcript|length=4290bp
ataactttttaatgacctattaattttttaaatctttttcaacacgattt
ttatttattttgaatttctgGAATTTCTTCTAGATTTAGAACGCGGCTAT
TTTGTGTTTCTTTTGCACCAAAGAGATAACTTGAAATCGAACTTGGCAAG
AGCCACTCAACATGGCTTCCACCTATGATGTAATGTCTTCAGAAGTTATC
GAAAACATTTACGAACAACTAATATGTCCAGTCTGTCTGGACCCTTTCAA
AGAACCTAAATTCCTGAAATGTCTTCACACTTTTTGCAATCATTGCATTC
ATGAGATCGTCAATCAGGAACCGAGGGACGTCATTATTTGTCCGACATGT
CGTGTAGAAACGCCGATCCCTGAGACGGGACTAGATGCTTTGAAGAAGAA
TTTCTTCGCAAACAGTATGCTGGACTTGGTTGCCTACCAGTACGAAGaaa
ttaagaaagaaaaacaaaaattgggcGATTGTGATCAGTGTGCCGATAAA
GATAATGTCAGCTCCAGGTGTTTGGAGTGTGACCTTCCACTATGCAGCAT
TTGCGTGGCCGATCATCGGCGAGGACATACCACGATGGATCATCGCATTG
TCTCCACGTCTGATGAAGACTTCCATGCCGATAAGAACTCGTCCGATCAA
TACACGCTGACGTTCTGCAAGTACCATACAAGAAACGTCATCAAGTATTT
CTGTAATACGTGTGACGAAACCGTTTGCCGTGTATGTACCATTCTCGAAC
ATCGTGAGCACCAGTTTGTGTATCCCAAAGAAGCCATACCTCAACAACGA
CCCATTATCCAAGAATTGCTCACACAAACGAAACAACATATCCCTGTTTT
GAGACACACCTTGAAAGACATCTCTAACATGCAGGAAGTTTTGGTGGACT
GTAAAACTACATTATTGGAAGAAATCAACACCAGGACAcaacaaaaaatt
gaagaacTTCTTGGTTGTAAAGAGGACCTTATCGCTGACTTGGACAAAAT
ATacaactccaaacaaaaaacattaagtCTTCAAAAAGATTCGATTGAGT
TAGAACTCGGGAAATTGGTGGGTTCGTGTGATTTTGCACAGAATATTATT
CAGGTTGGTAACGATGTTGAGATTCTAAGAATCAAATCTCGATTGCAGCA
ACTCAATAAATTGGACATTAACTTAGATCCCGAGGAAGATGATTCCATCC
AGTATTTAAAGGACGAATCACCTGAATTCCCTCTAGGATGTATTGCTGCA
ACTCAAACGTTTGCTTCACTTTCTTACGCGCAAGGTGAAGCTTTCGAGAC
CGCCAGAGCTGGTAGCGAGACCAGTATTGTGGTGGTGGCGCAAACCAGGC
ACGGTCAGAAGAACATTGGTCAAGATAAAGTGGAAGCACATCTAGTGGCT
CCTGATCAAACGAAGAAATCGATTGAAGCAACCGATAACAATGATGGCAC
GTATTCCATCCGCTTCACACCTGATATTAGTGGGAAACACATGCTGGAAG
TCACCATCAAAGAAAAACCGATTCGGGGAAGCCCTTTTCCAATCATCGTC
ACTAATCGACGAGAATACAATGAAGTCGGGTTATCTTTATTCAAGTTCGG
GCAATACGGGTCTAAAAAGCGAGAATTCAAATCTCCTTTCGGTGTTGCGA
GTGACTCAGAGGGCTTCATGTTTGTTGCAGATAGTTATAACCACAGGATT
CAAACCTTCGGACCAAGAGGGGAATTTATTAACATGTTCGGGTCCCATGG
GGAGAGAAAAGGGGAATTCAACTGCCCTACAGACGTCGCAGTTTCCCCTA
ACAATCGGATTGCTGTTTGTGATAACGGAAACAACCGAGTGCAAGTGTTT
TCAAAACGCGGAAGTTTTATCGCTAAATTCGGTCGTGAAGGAACTAAAAA
CGGACTTTTTAAATCCCCATGGGGAATTACAATCTCCCAAACGTCTCGTG
AAATTATTGTGGCTGATACTGACAATCACAGAATACAAATTTTCAGTGCC
GAGGGAAAATTTATCATGAAATTTGGTTCCCAAGGGGATCGCGCAGGACA
ATTTAATTCCCCATGTTATGTGGCAGTCAACCCGGATAAAGAACATATTC
TAGTGTCAGATTCGAAAAACCACAGGATTCAAATATTCGACAAACGTGGG
AAATTCATCCAACTTTTTGGAGTACAAGGACAATTAGATGGACAATTCAA
TCACCCGCGTGGTTTATCTATGGATATTGCAAATAACATTATTGTGTCTG
ACATGGGAAATCATAGACTCCAAGTGTTGACTTACTCAGGGAAAATGATT
AAGTGTATTGGTTCTGAGGGGAATGGGGATGGTCAACTCTCCTTCCCTGA
GAGTGTTTCCGTCACACAGAATGGATATATCATTGTGTCAGACCTCAGCA
ATAACCGAATACAAGTTTTCTAAGAAtgataaaacaatttttaatacaAG
AATTTAAAggcatttttataaatttaaacTGTAAATTTCTAAATTATAGA
GTCAGCTCTAggttaaagaaaaaagagacaaaagcttACATGTAAAGGAA
ATGTCTGCTCTTGTCACGCAAAGGAGGATGCACAGATCTTCCTTTAAAGG
CTGCCGTTCTGAACCTTTGAGTTAGAAAAACAGTCCCTCCATTCAATCAT
AAAATTACAAAGTCCCACTTCATTTCAATAACATTTTGATCACTCAAGGT
CGGTTGTCATCCTTTAGAATTATACTTTCTTGAAAAGAATGCAATAAGGT
CGAACTCGTTCTTCTGATGTGATAAAATAAGTGTCTTGACCACCACTAGG
AACTTTGTACTCTGCTGTGTAACTCATATCTACACGATCCATGAAAATCA
TTTTGTATTTATGtccttcaaaatcaaaactctCTGATTGCTGTTCGGCC
AAGTGTGGTGAAGACGTTGTATAGATCCCTTTCCCTGGAGTGAAATTTTG
GCCCTGGTGCACTGGGTTTCTGCTTCTTTCCCTGCAAAGTTTCTCAACGT
CTCCTTTCTTAGTGCCATGGTATGCTACTGGCCATTCACCACCGGCGGAT
TGCGTTTCTGATTGGCGCCCTGCGACTCCAAGCCACGTGTTGTTTTCATA
CTTTCCAAGCACTCTCAATGCTTTTTTCATCCATCCACATGGTCGAATGA
ATCGTCGATTTCCCCTTGAGAATTGCGTTTTGTCAGCTGCACCGTATTGG
TAATCATACTTCGGATGAAGGAAAGTTTCGGCGTTCATGTAAAAAGCAGG
GGCAACAGTTTCAGCACTGATGATCATGAACAGTGTGGCATTCTCAGTAA
TGAAACTATCCTTAAGGGTGGCTTCATCCTTCAAATTTTTGTTGAGATGC
AAAAGTTTAAGGCCTTGTGTTAATCCAAGTCCGTCAGATGATCGAATCGA
ATCTTTGACGTCTGAGATTTGACTGTCAGGTTTCACTTTCACCATTGTTG
ATTTTCCGGTGAGAGTTTTCACCGTCAAAGTGATATCTCCACTGGCATTC
GATTGACCAGGATTGCTAACCGAAGGGCTTTTACTTGCTAGATTCCTCTG
ACCAGAGATGGCAGCTTGAGCTGTAGGGATATTTGTAGCCAGACCCCTTT
GAGCAGGGCTTCCAGTCGGTGGAGCATTAGTTGCTAAGTTCCTTTGACCA
GGGAGTGATGTAGAAGGAGCAGCAGCCGAATTATTGTTACCATCAGAGGA
CACCCAATGCAGACTGTATTTGTGCAACGAATCCAGATCAAGAACAGGTA
AAGGTTTGCCAGTGTTGATGGAAGGATCAGATGGTGTCAATACAATCTTC
AGATTTAAAAGATCAGATAGTCCTTTGGGAACGATGTCAGCCATCCTCGC
TTTCGTCAAACACGTTCGATACCAAAATGTTCTCTGAAAATTGTATAAAG
TGGATTAAAGTGGCACAGGTTATGAGAAAACTTAGGGGACTAGGACATTT
GACCAAGCGTAGCTTTCATCTATAATGATGAGGCTGTTCGTGAAATGCAA
GCTTTCACAATAGAAGTCATAAACAGAGAAAAGTCAAACCACCCATCTAT
GTCTCAGTGATCTGGTGAGAATTACATTTCATAGGTCCAATAGAGACGAT
TTAGTTTTTTACCTTTCTTaacaaatttcaagattttttaagatCACGAT
GTGATGTGAAAGTTAAAATCTAAAGAAAGAAAACCCCTACCTTTCAACCT
gctctttttattttaaaacacTCATGCAAACTTGCAATCCAacttaaaca
tatcaaaacaacACAACATCTCTTTAAACTTTATTTGAAC
Run BLAST on NCBI

protein sequence of TCONS_00068110-protein

>TCONS_00068110-protein ID=TCONS_00068110-protein|Name=TCONS_00068110-protein|organism=Clytia hemisphaerica|type=polypeptide|length=753bp
MASTYDVMSSEVIENIYEQLICPVCLDPFKEPKFLKCLHTFCNHCIHEIV
NQEPRDVIICPTCRVETPIPETGLDALKKNFFANSMLDLVAYQYEEIKKE
KQKLGDCDQCADKDNVSSRCLECDLPLCSICVADHRRGHTTMDHRIVSTS
DEDFHADKNSSDQYTLTFCKYHTRNVIKYFCNTCDETVCRVCTILEHREH
QFVYPKEAIPQQRPIIQELLTQTKQHIPVLRHTLKDISNMQEVLVDCKTT
LLEEINTRTQQKIEELLGCKEDLIADLDKIYNSKQKTLSLQKDSIELELG
KLVGSCDFAQNIIQVGNDVEILRIKSRLQQLNKLDINLDPEEDDSIQYLK
DESPEFPLGCIAATQTFASLSYAQGEAFETARAGSETSIVVVAQTRHGQK
NIGQDKVEAHLVAPDQTKKSIEATDNNDGTYSIRFTPDISGKHMLEVTIK
EKPIRGSPFPIIVTNRREYNEVGLSLFKFGQYGSKKREFKSPFGVASDSE
GFMFVADSYNHRIQTFGPRGEFINMFGSHGERKGEFNCPTDVAVSPNNRI
AVCDNGNNRVQVFSKRGSFIAKFGREGTKNGLFKSPWGITISQTSREIIV
ADTDNHRIQIFSAEGKFIMKFGSQGDRAGQFNSPCYVAVNPDKEHILVSD
SKNHRIQIFDKRGKFIQLFGVQGQLDGQFNHPRGLSMDIANNIIVSDMGN
HRLQVLTYSGKMIKCIGSEGNGDGQLSFPESVSVTQNGYIIVSDLSNNRI
QVF
Run BLAST on NCBI

transcript from alignment at scaffold_48:134700..139676+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068110 ID=TCONS_00068110|Name=TCONS_00068110|organism=Clytia hemisphaerica|type=transcript|length=4977bp|location=Sequence derived from alignment at scaffold_48:134700..139676+ (Clytia hemisphaerica)
ataactttttaatgacctattaattttttaaatctttttcaacacgattt
ttatttattttgaatttctgGAATTTCTTCTAGATTTAGAACGCGGCTAT
TTTGTGTTTCTTTTGCACCAAAGAGATAACTTGAAATCGGTAAGATATTT
GAAAGAAACATTATTTGATATAAGGAGTATTTGGTTGAACTACTAAACCG
ATTGAAAGTTGCCATACTTATTCCAAAGCAACAACAACACCTCAACTAAA
ATAACTCCTCATGGGCTCCTCATAGAACTTAGGAATTTAATGTATAAACA
TTGTTCTTTTGAATTTAGATTCTGATCTTATTTTCTTGGTGAATGAGTGT
AACAAATTCTAATAAGTGTTCTTACACTATTTGTTAATTAATAACCTTTT
TTCATTCAGAACTTGGCAAGAGCCACTCAACATGGCTTCCACCTATGATG
TAATGTCTTCAGAAGTTATCGAAAACATTTACGAACAACTAATATGTCCA
GTCTGTCTGGACCCTTTCAAAGAACCTAAATTCCTGAAATGTCTTCACAC
TTTTTGCAATCATTGCATTCATGAGATCGTCAATCAGGAACCGAGGGACG
TCATTATTTGTCCGACATGTCGTGTAGAAACGCCGATCCCTGAGACGGGA
CTAGATGCTTTGAAGAAGAATTTCTTCGCAAACAGTATGCTGGACTTGGT
TGCCTACCAGTACGAAGaaattaagaaagaaaaacaaaaattgggcGATT
GTGATCAGTGTGCCGATAAAGATAATGTCAGCTCCAGGTAAGAATCGGTC
TGTTTTCTTGAAGGTAATAGTGAAGGGGAAGGTGAAGAAGTTGTTTGTTT
TAGATCTATTCAAGAGTGAAAAGATTCAATTCATACTAGACTAATTTTAC
AATATAGGTACAGAAAGCTGTTTCCCTATGACTTTTATCTCAAAACTCTT
TCTTCTCTACTTAAGGTGTTTGGAGTGTGACCTTCCACTATGCAGCATTT
GCGTGGCCGATCATCGGCGAGGACATACCACGATGGATCATCGCATTGTC
TCCACGTCTGATGAAGACTTCCATGCCGATAAGAACTCGTCCGATCAATA
CACGCTGACGTTCTGCAAGTACCATACAAGAAACGTCATCAAGTATTTCT
GTAATACGTGTGACGAAACCGTTTGCCGTGTATGTACCATTCTCGAACAT
CGTGAGCACCAGTTTGTGTATCCCAAAGAAGCCATACCTCAACAACGACC
CATTATCCAAGAATTGCTCACACAAACGAAACAACATATCCCTGTTTTGA
GACACACCTTGAAAGACATCTCTAACATGCAGGAAGTTTTGGTGGACTGT
AAAACTACATTATTGGAAGAAATCAACACCAGGACAcaacaaaaaattga
agaacTTCTTGGTTGTAAAGAGGACCTTATCGCTGACTTGGACAAAATAT
acaactccaaacaaaaaacattaagtCTTCAAAAAGATTCGATTGAGTTA
GAACTCGGGAAATTGGTGGGTTCGTGTGATTTTGCACAGAATATTATTCA
GGTTGGTAACGATGTTGAGATTCTAAGAATCAAATCTCGATTGCAGCAAC
TCAATAAATTGGACATTAACTTAGATCCCGAGGAAGATGATTCCATCCAG
TATTTAAAGGACGAATCACCTGAATTCCCTCTAGGATGTATTGCTGCAAC
TCAAACGTTTGCTTCACTTTCTTACGCGCAAGGTGAAGCTTTCGAGACCG
CCAGAGCTGGTAGCGAGACCAGTATTGTGGTGGTGGCGCAAACCAGGCAC
GGTCAGAAGAACATTGGTCAAGATAAAGTGGAAGCACATCTAGTGGCTCC
TGATCAAACGAAGAAATCGATTGAAGCAACCGATAACAGTGAGTCTTTTG
TTACTTATTTCTTCACGCTAATTTCATATTGAAAATGCTTTTACTTCTAT
CGAATTTATTGCTAGATGCTCTGGTTGCGccttatgaaatttatttgatc
ACGACATAATCCCGTGCCTAGTAGAAAGCAATGTTCATCAAATCAAGGGT
GGGTATGGAAACAAACTCCACCTCTCATACGTACAAACAACGGCAGATAC
TCTAATCATCATTCGTTTATCTTTTAGATGATGGCACGTATTCCATCCGC
TTCACACCTGATATTAGTGGGAAACACATGCTGGAAGTCACCATCAAAGA
AAAACCGATTCGGGGAAGCCCTTTTCCAATCATCGTCACTAATCGACGAG
AATACAATGAAGTCGGGTTATCTTTATTCAAGTTCGGGCAATACGGGTCT
AAAAAGCGAGAATTCAAATCTCCTTTCGGTGTTGCGAGTGACTCAGAGGG
CTTCATGTTTGTTGCAGATAGTTATAACCACAGGATTCAAACCTTCGGAC
CAAGAGGGGAATTTATTAACATGTTCGGGTCCCATGGGGAGAGAAAAGGG
GAATTCAACTGCCCTACAGACGTCGCAGTTTCCCCTAACAATCGGATTGC
TGTTTGTGATAACGGAAACAACCGAGTGCAAGTGTTTTCAAAACGCGGAA
GTTTTATCGCTAAATTCGGTCGTGAAGGAACTAAAAACGGACTTTTTAAA
TCCCCATGGGGAATTACAATCTCCCAAACGTCTCGTGAAATTATTGTGGC
TGATACTGACAATCACAGAATACAAATTTTCAGTGCCGAGGGAAAATTTA
TCATGAAATTTGGTTCCCAAGGGGATCGCGCAGGACAATTTAATTCCCCA
TGTTATGTGGCAGTCAACCCGGATAAAGAACATATTCTAGTGTCAGATTC
GAAAAACCACAGGATTCAAATATTCGACAAACGTGGGAAATTCATCCAAC
TTTTTGGAGTACAAGGACAATTAGATGGACAATTCAATCACCCGCGTGGT
TTATCTATGGATATTGCAAATAACATTATTGTGTCTGACATGGGAAATCA
TAGACTCCAAGTGTTGACTTACTCAGGGAAAATGATTAAGTGTATTGGTT
CTGAGGGGAATGGGGATGGTCAACTCTCCTTCCCTGAGAGTGTTTCCGTC
ACACAGAATGGATATATCATTGTGTCAGACCTCAGCAATAACCGAATACA
AGTTTTCTAAGAAtgataaaacaatttttaatacaAGAATTTAAAggcat
ttttataaatttaaacTGTAAATTTCTAAATTATAGAGTCAGCTCTAggt
taaagaaaaaagagacaaaagcttACATGTAAAGGAAATGTCTGCTCTTG
TCACGCAAAGGAGGATGCACAGATCTTCCTTTAAAGGCTGCCGTTCTGAA
CCTTTGAGTTAGAAAAACAGTCCCTCCATTCAATCATAAAATTACAAAGT
CCCACTTCATTTCAATAACATTTTGATCACTCAAGGTCGGTTGTCATCCT
TTAGAATTATACTTTCTTGAAAAGAATGCAATAAGGTCGAACTCGTTCTT
CTGATGTGATAAAATAAGTGTCTTGACCACCACTAGGAACTTTGTACTCT
GCTGTGTAACTCATATCTACACGATCCATGAAAATCATTTTGTATTTATG
tccttcaaaatcaaaactctCTGATTGCTGTTCGGCCAAGTGTGGTGAAG
ACGTTGTATAGATCCCTTTCCCTGGAGTGAAATTTTGGCCCTGGTGCACT
GGGTTTCTGCTTCTTTCCCTGCAAAGTTTCTCAACGTCTCCTTTCTTAGT
GCCATGGTATGCTACTGGCCATTCACCACCGGCGGATTGCGTTTCTGATT
GGCGCCCTGCGACTCCAAGCCACGTGTTGTTTTCATACTTTCCAAGCACT
CTCAATGCTTTTTTCATCCATCCACATGGTCGAATGAATCGTCGATTTCC
CCTTGAGAATTGCGTTTTGTCAGCTGCACCGTATTGGTAATCATACTTCG
GATGAAGGAAAGTTTCGGCGTTCATGTAAAAAGCAGGGGCAACAGTTTCA
GCACTGATGATCATGAACAGTGTGGCATTCTCAGTAATGAAACTATCCTT
AAGGGTGGCTTCATCCTTCAAATTTTTGTTGAGATGCAAAAGTTTAAGGC
CTTGTGTTAATCCAAGTCCGTCAGATGATCGAATCGAATCTTTGACGTCT
GAGATTTGACTGTCAGGTTTCACTTTCACCATTGTTGATTTTCCGGTGAG
AGTTTTCACCGTCAAAGTGATATCTCCACTGGCATTCGATTGACCAGGAT
TGCTAACCGAAGGGCTTTTACTTGCTAGATTCCTCTGACCAGAGATGGCA
GCTTGAGCTGTAGGGATATTTGTAGCCAGACCCCTTTGAGCAGGGCTTCC
AGTCGGTGGAGCATTAGTTGCTAAGTTCCTTTGACCAGGGAGTGATGTAG
AAGGAGCAGCAGCCGAATTATTGTTACCATCAGAGGACACCCAATGCAGA
CTGTATTTGTGCAACGAATCCAGATCAAGAACAGGTAAAGGTTTGCCAGT
GTTGATGGAAGGATCAGATGGTGTCAATACAATCTTCAGATTTAAAAGAT
CAGATAGTCCTTTGGGAACGATGTCAGCCATCCTCGCTTTCGTCAAACAC
GTTCGATACCAAAATGTTCTCTGAAAATTGTATAAAGTGGATTAAAGTGG
CACAGGTTATGAGAAAACTTAGGGGACTAGGACATTTGACCAAGCGTAGC
TTTCATCTATAATGATGAGGCTGTTCGTGAAATGCAAGCTTTCACAATAG
AAGTCATAAACAGAGAAAAGTCAAACCACCCATCTATGTCTCAGTGATCT
GGTGAGAATTACATTTCATAGGTCCAATAGAGACGATTTAGTTTTTTACC
TTTCTTaacaaatttcaagattttttaagatCACGATGTGATGTGAAAGT
TAAAATCTAAAGAAAGAAAACCCCTACCTTTCAACCTgctctttttattt
taaaacacTCATGCAAACTTGCAATCCAacttaaacatatcaaaacaacA
CAACATCTCTTTAAACTTTATTTGAAC

Coding sequence (CDS) from alignment at scaffold_48:134700..139676+

>TCONS_00068110 ID=TCONS_00068110|Name=TCONS_00068110|organism=Clytia hemisphaerica|type=CDS|length=6786bp|location=Sequence derived from alignment at scaffold_48:134700..139676+ (Clytia hemisphaerica)
ATGGCTTCCACCTATGATGTAATGTCTTCAGAAGTTATCGAAAACATTTA
CGAACAACTAATATGTCCAGTCTGTCTGGACCCTTTCAAAGAACCTAAAT
TCCTGAAATGTCTTCACACTTTTTGCAATCATTGCATTCATGAGATCGTC
AATCAGGAACCGAGGGACGTCATTATTTGTCCGACATGTCGTGTAGAAAC
GCCGATCCCTGAGACGGGACTAGATGCTTTGAAGAAGAATTTCTTCGCAA
ACAGTATGCTGGACTTGGTTGCCTACCAGTACGAAGaaattaagaaagaa
aaacaaaaattgggcGATTGTGATCAGTGTGCCGATAAAGATAATGTCAG
CTCCAGGTGTTTGGAGTGTGACCTTCCACTATGCAGCATTTGCGTGGCCG
ATCATCGGCGAGGACATACCACGATGGATCATCGCATTGTCTCCACGTCT
GATGAAGACTTCCATGCCGATAAGAACTCGTCCGATCAATACACGCTGAC
GTTCTGCAAGTACCATACAAGAAACGTCATCAAGTATTTCTGTAATACGT
GTGACGAAACCGTTTGCCGTGTATGTACCATTCTCGAACATCGTGAGCAC
CAGTTTGTGTATCCCAAAGAAGCCATACCTCAACAACGACCCATTATCCA
AGAATTGCTCACACAAACGAAACAACATATCCCTGTTTTGAGACACACCT
TGAAAGACATCTCTAACATGCAGGAAGTTTTGGTGGACTGTAAAACTACA
TTATTGGAAGAAATCAACACCAGGACAcaacaaaaaattgaagaacTTCT
TGGTTGTAAAGAGGACCTTATCGCTGACTTGGACAAAATATacaactcca
aacaaaaaacattaagtCTTCAAAAAGATTCGATTGAGTTAGAACTCGGG
AAATTGGTGGGTTCGTGTGATTTTGCACAGAATATTATTCAGGTTGGTAA
CGATGTTGAGATTCTAAGAATCAAATCTCGATTGCAGCAACTCAATAAAT
TGGACATTAACTTAGATCCCGAGGAAGATGATTCCATCCAGTATTTAAAG
GACGAATCACCTGAATTCCCTCTAGGATGTATTGCTGCAACTCAAACGTT
TGCTTCACTTTCTTACGCGCAAGGTGAAGCTTTCGAGACCGCCAGAGCTG
GTAGCGAGACCAGTATTGTGGTGGTGGCGCAAACCAGGCACGGTCAGAAG
AACATTGGTCAAGATAAAGTGGAAGCACATCTAGTGGCTCCTGATCAAAC
GAAGAAATCGATTGAAGCAACCGATAACAATGATGGCACGTATTCCATCC
GCTTCACACCTGATATTAGTGGGAAACACATGCTGGAAGTCACCATCAAA
GAAAAACCGATTCGGGGAAGCCCTTTTCCAATCATCGTCACTAATCGACG
AGAATACAATGAAGTCGGGTTATCTTTATTCAAGTTCGGGCAATACGGGT
CTAAAAAGCGAGAATTCAAATCTCCTTTCGGTGTTGCGAGTGACTCAGAG
GGCTTCATGTTTGTTGCAGATAGTTATAACCACAGGATTCAAACCTTCGG
ACCAAGAGGGGAATTTATTAACATGTTCGGGTCCCATGGGGAGAGAAAAG
GGGAATTCAACTGCCCTACAGACGTCGCAGTTTCCCCTAACAATCGGATT
GCTGTTTGTGATAACGGAAACAACCGAGTGCAAGTGTTTTCAAAACGCGG
AAGTTTTATCGCTAAATTCGGTCGTGAAGGAACTAAAAACGGACTTTTTA
AATCCCCATGGGGAATTACAATCTCCCAAACGTCTCGTGAAATTATTGTG
GCTGATACTGACAATCACAGAATACAAATTTTCAGTGCCGAGGGAAAATT
TATCATGAAATTTGGTTCCCAAGGGGATCGCGCAGGACAATTTAATTCCC
CATGTTATGTGGCAGTCAACCCGGATAAAGAACATATTCTAGTGTCAGAT
TCGAAAAACCACAGGATTCAAATATTCGACAAACGTGGGAAATTCATCCA
ACTTTTTGGAGTACAAGGACAATTAGATGGACAATTCAATCACCCGCGTG
GTTTATCTATGGATATTGCAAATAACATTATTGTGTCTGACATGGGAAAT
CATAGACTCCAAGTGTTGACTTACTCAGGGAAAATGATTAAGTGTATTGG
TTCTGAGGGGAATGGGGATGGTCAACTCTCCTTCCCTGAGAGTGTTTCCG
TCACACAGAATGGATATATCATTGTGTCAGACCTCAGCAATAACCGAATA
CAAGTTTTCTAAATGGCTTCCACCTATGATGTAATGTCTTCAGAAGTTAT
CGAAAACATTTACGAACAACTAATATGTCCAGTCTGTCTGGACCCTTTCA
AAGAACCTAAATTCCTGAAATGTCTTCACACTTTTTGCAATCATTGCATT
CATGAGATCGTCAATCAGGAACCGAGGGACGTCATTATTTGTCCGACATG
TCGTGTAGAAACGCCGATCCCTGAGACGGGACTAGATGCTTTGAAGAAGA
ATTTCTTCGCAAACAGTATGCTGGACTTGGTTGCCTACCAGTACGAAGaa
attaagaaagaaaaacaaaaattgggcGATTGTGATCAGTGTGCCGATAA
AGATAATGTCAGCTCCAGGTGTTTGGAGTGTGACCTTCCACTATGCAGCA
TTTGCGTGGCCGATCATCGGCGAGGACATACCACGATGGATCATCGCATT
GTCTCCACGTCTGATGAAGACTTCCATGCCGATAAGAACTCGTCCGATCA
ATACACGCTGACGTTCTGCAAGTACCATACAAGAAACGTCATCAAGTATT
TCTGTAATACGTGTGACGAAACCGTTTGCCGTGTATGTACCATTCTCGAA
CATCGTGAGCACCAGTTTGTGTATCCCAAAGAAGCCATACCTCAACAACG
ACCCATTATCCAAGAATTGCTCACACAAACGAAACAACATATCCCTGTTT
TGAGACACACCTTGAAAGACATCTCTAACATGCAGGAAGTTTTGGTGGAC
TGTAAAACTACATTATTGGAAGAAATCAACACCAGGACAcaacaaaaaat
tgaagaacTTCTTGGTTGTAAAGAGGACCTTATCGCTGACTTGGACAAAA
TATacaactccaaacaaaaaacattaagtCTTCAAAAAGATTCGATTGAG
TTAGAACTCGGGAAATTGGTGGGTTCGTGTGATTTTGCACAGAATATTAT
TCAGGTTGGTAACGATGTTGAGATTCTAAGAATCAAATCTCGATTGCAGC
AACTCAATAAATTGGACATTAACTTAGATCCCGAGGAAGATGATTCCATC
CAGTATTTAAAGGACGAATCACCTGAATTCCCTCTAGGATGTATTGCTGC
AACTCAAACGTTTGCTTCACTTTCTTACGCGCAAGGTGAAGCTTTCGAGA
CCGCCAGAGCTGGTAGCGAGACCAGTATTGTGGTGGTGGCGCAAACCAGG
CACGGTCAGAAGAACATTGGTCAAGATAAAGTGGAAGCACATCTAGTGGC
TCCTGATCAAACGAAGAAATCGATTGAAGCAACCGATAACAATGATGGCA
CGTATTCCATCCGCTTCACACCTGATATTAGTGGGAAACACATGCTGGAA
GTCACCATCAAAGAAAAACCGATTCGGGGAAGCCCTTTTCCAATCATCGT
CACTAATCGACGAGAATACAATGAAGTCGGGTTATCTTTATTCAAGTTCG
GGCAATACGGGTCTAAAAAGCGAGAATTCAAATCTCCTTTCGGTGTTGCG
AGTGACTCAGAGGGCTTCATGTTTGTTGCAGATAGTTATAACCACAGGAT
TCAAACCTTCGGACCAAGAGGGGAATTTATTAACATGTTCGGGTCCCATG
GGGAGAGAAAAGGGGAATTCAACTGCCCTACAGACGTCGCAGTTTCCCCT
AACAATCGGATTGCTGTTTGTGATAACGGAAACAACCGAGTGCAAGTGTT
TTCAAAACGCGGAAGTTTTATCGCTAAATTCGGTCGTGAAGGAACTAAAA
ACGGACTTTTTAAATCCCCATGGGGAATTACAATCTCCCAAACGTCTCGT
GAAATTATTGTGGCTGATACTGACAATCACAGAATACAAATTTTCAGTGC
CGAGGGAAAATTTATCATGAAATTTGGTTCCCAAGGGGATCGCGCAGGAC
AATTTAATTCCCCATGTTATGTGGCAGTCAACCCGGATAAAGAACATATT
CTAGTGTCAGATTCGAAAAACCACAGGATTCAAATATTCGACAAACGTGG
GAAATTCATCCAACTTTTTGGAGTACAAGGACAATTAGATGGACAATTCA
ATCACCCGCGTGGTTTATCTATGGATATTGCAAATAACATTATTGTGTCT
GACATGGGAAATCATAGACTCCAAGTGTTGACTTACTCAGGGAAAATGAT
TAAGTGTATTGGTTCTGAGGGGAATGGGGATGGTCAACTCTCCTTCCCTG
AGAGTGTTTCCGTCACACAGAATGGATATATCATTGTGTCAGACCTCAGC
AATAACCGAATACAAGTTTTCTAAATGGCTTCCACCTATGATGTAATGTC
TTCAGAAGTTATCGAAAACATTTACGAACAACTAATATGTCCAGTCTGTC
TGGACCCTTTCAAAGAACCTAAATTCCTGAAATGTCTTCACACTTTTTGC
AATCATTGCATTCATGAGATCGTCAATCAGGAACCGAGGGACGTCATTAT
TTGTCCGACATGTCGTGTAGAAACGCCGATCCCTGAGACGGGACTAGATG
CTTTGAAGAAGAATTTCTTCGCAAACAGTATGCTGGACTTGGTTGCCTAC
CAGTACGAAGaaattaagaaagaaaaacaaaaattgggcGATTGTGATCA
GTGTGCCGATAAAGATAATGTCAGCTCCAGGTGTTTGGAGTGTGACCTTC
CACTATGCAGCATTTGCGTGGCCGATCATCGGCGAGGACATACCACGATG
GATCATCGCATTGTCTCCACGTCTGATGAAGACTTCCATGCCGATAAGAA
CTCGTCCGATCAATACACGCTGACGTTCTGCAAGTACCATACAAGAAACG
TCATCAAGTATTTCTGTAATACGTGTGACGAAACCGTTTGCCGTGTATGT
ACCATTCTCGAACATCGTGAGCACCAGTTTGTGTATCCCAAAGAAGCCAT
ACCTCAACAACGACCCATTATCCAAGAATTGCTCACACAAACGAAACAAC
ATATCCCTGTTTTGAGACACACCTTGAAAGACATCTCTAACATGCAGGAA
GTTTTGGTGGACTGTAAAACTACATTATTGGAAGAAATCAACACCAGGAC
AcaacaaaaaattgaagaacTTCTTGGTTGTAAAGAGGACCTTATCGCTG
ACTTGGACAAAATATacaactccaaacaaaaaacattaagtCTTCAAAAA
GATTCGATTGAGTTAGAACTCGGGAAATTGGTGGGTTCGTGTGATTTTGC
ACAGAATATTATTCAGGTTGGTAACGATGTTGAGATTCTAAGAATCAAAT
CTCGATTGCAGCAACTCAATAAATTGGACATTAACTTAGATCCCGAGGAA
GATGATTCCATCCAGTATTTAAAGGACGAATCACCTGAATTCCCTCTAGG
ATGTATTGCTGCAACTCAAACGTTTGCTTCACTTTCTTACGCGCAAGGTG
AAGCTTTCGAGACCGCCAGAGCTGGTAGCGAGACCAGTATTGTGGTGGTG
GCGCAAACCAGGCACGGTCAGAAGAACATTGGTCAAGATAAAGTGGAAGC
ACATCTAGTGGCTCCTGATCAAACGAAGAAATCGATTGAAGCAACCGATA
ACAATGATGGCACGTATTCCATCCGCTTCACACCTGATATTAGTGGGAAA
CACATGCTGGAAGTCACCATCAAAGAAAAACCGATTCGGGGAAGCCCTTT
TCCAATCATCGTCACTAATCGACGAGAATACAATGAAGTCGGGTTATCTT
TATTCAAGTTCGGGCAATACGGGTCTAAAAAGCGAGAATTCAAATCTCCT
TTCGGTGTTGCGAGTGACTCAGAGGGCTTCATGTTTGTTGCAGATAGTTA
TAACCACAGGATTCAAACCTTCGGACCAAGAGGGGAATTTATTAACATGT
TCGGGTCCCATGGGGAGAGAAAAGGGGAATTCAACTGCCCTACAGACGTC
GCAGTTTCCCCTAACAATCGGATTGCTGTTTGTGATAACGGAAACAACCG
AGTGCAAGTGTTTTCAAAACGCGGAAGTTTTATCGCTAAATTCGGTCGTG
AAGGAACTAAAAACGGACTTTTTAAATCCCCATGGGGAATTACAATCTCC
CAAACGTCTCGTGAAATTATTGTGGCTGATACTGACAATCACAGAATACA
AATTTTCAGTGCCGAGGGAAAATTTATCATGAAATTTGGTTCCCAAGGGG
ATCGCGCAGGACAATTTAATTCCCCATGTTATGTGGCAGTCAACCCGGAT
AAAGAACATATTCTAGTGTCAGATTCGAAAAACCACAGGATTCAAATATT
CGACAAACGTGGGAAATTCATCCAACTTTTTGGAGTACAAGGACAATTAG
ATGGACAATTCAATCACCCGCGTGGTTTATCTATGGATATTGCAAATAAC
ATTATTGTGTCTGACATGGGAAATCATAGACTCCAAGTGTTGACTTACTC
AGGGAAAATGATTAAGTGTATTGGTTCTGAGGGGAATGGGGATGGTCAAC
TCTCCTTCCCTGAGAGTGTTTCCGTCACACAGAATGGATATATCATTGTG
TCAGACCTCAGCAATAACCGAATACAAGTTTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042522XLOC_042522Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068110-proteinTCONS_00068110-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068110-exon-scaffold_48-1491911889:134700..134838TCONS_00068110-exon-scaffold_48-1491911889:134700..134838Clytia hemisphaericaexon
TCONS_00068110-exon-scaffold_48-1510915933:134700..134838TCONS_00068110-exon-scaffold_48-1510915933:134700..134838Clytia hemisphaericaexon
TCONS_00068110-exon-scaffold_48-1575043694:134700..134838TCONS_00068110-exon-scaffold_48-1575043694:134700..134838Clytia hemisphaericaexon
TCONS_00068110-exon-scaffold_48-1491911889:135109..135486TCONS_00068110-exon-scaffold_48-1491911889:135109..135486Clytia hemisphaericaexon
TCONS_00068110-exon-scaffold_48-1510915933:135109..135486TCONS_00068110-exon-scaffold_48-1510915933:135109..135486Clytia hemisphaericaexon
TCONS_00068110-exon-scaffold_48-1575043694:135109..135486TCONS_00068110-exon-scaffold_48-1575043694:135109..135486Clytia hemisphaericaexon
TCONS_00068110-exon-scaffold_48-1491911889:135665..136587TCONS_00068110-exon-scaffold_48-1491911889:135665..136587Clytia hemisphaericaexon
TCONS_00068110-exon-scaffold_48-1510915933:135665..136587TCONS_00068110-exon-scaffold_48-1510915933:135665..136587Clytia hemisphaericaexon
TCONS_00068110-exon-scaffold_48-1575043694:135665..136587TCONS_00068110-exon-scaffold_48-1575043694:135665..136587Clytia hemisphaericaexon
TCONS_00068110-exon-scaffold_48-1491911889:136827..139676TCONS_00068110-exon-scaffold_48-1491911889:136827..139676Clytia hemisphaericaexon
TCONS_00068110-exon-scaffold_48-1510915933:136827..139676TCONS_00068110-exon-scaffold_48-1510915933:136827..139676Clytia hemisphaericaexon
TCONS_00068110-exon-scaffold_48-1575043694:136827..139676TCONS_00068110-exon-scaffold_48-1575043694:136827..139676Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:134700..139676 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0844473	0.248719	0.0717742	0.0696537	0.781949	0.892532	12.6632	12.5876	0.99148	1.36739	7.15697	3.99044	6.6471	4.9957	4.21757	15.2812	8.72313	8.20571	0.558616	0.44113	2.53215	1.992	2.70953	4.16122	4.58843	5.86479	0.865592	0.614042	0.16406	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR003649Bbox_C
IPR000315Znf_B-box
IPR001298Filamin/ABP280_rpt
IPR001258NHL_repeat
IPR013783Ig-like_fold
IPR0110426-blade_b-propeller_TolB-like
IPR018957Znf_C3HC4_RING-type
IPR017868Filamin/ABP280_repeat-like
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR013017NHL_repeat_subgr
IPR014756Ig_E-set
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005622 intracellular
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00068110 vs. Swiss-Prot (Human)
Match: LIN41 (E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens GN=TRIM71 PE=1 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 5.035e-113
Identity = 216/676 (31.95%), Postives = 353/676 (52.22%), Query Frame = 3 
Query:  480 CDQCADKDNVSSRCLECDLPLCSICVADHRRGHTTMDHRIVSTSDEDFHADKNSSDQYT-----------------LTFCKYHTRNVIKYFCNTCDETVCRVCTILEHREHQFVYPKEAIPQQRPIIQELLT---QTKQHIPVLRHTLKDISNMQEVLVDCKTTLLEEINTRTQQKIEELLGCKEDLIADLDKIYNSKQKTLSLQKDSIELELGKLVGSCDFAQNIIQVGNDVEIL----RIKSRLQQLNKLDINLDPEEDDSIQYLKDESPEF----PLGCIAATQTFASLSYAQGEAFETARAGSETSIVVVAQTRHGQKNI-GQDKVEAHLVAPDQTKKSIEATDNNDGTYSIRFTPDISGKHMLEVTIKEKPIRGSPFPIIVTNRREYNEVGLSLFKFGQYGSKKREFKSPFGVASDSEGFMFVADSYNHRIQTFGPRGEFINMFGSHGERKGEFNCPTDVAVSPNNRIAVCDNGNNRVQVFSKRGSFIAKFGREGTKNGLFKSPWGITISQTSREIIVADTDNHRIQIFSAEGKFIMKFGSQGDRAGQFNSPCYVAVNPDKEHILVSDSKNHRIQIFDKRGKFIQLFGVQGQLDGQFNHPRGLSMDIANNIIVSDMGNHRLQVLTYSGKMIKCIGSEGNGDGQLSFPESVSVTQNGYIIVSDLSNNRIQVF 2420
            C  C + +  SSRCL+C   LC  CV  H+R   T DH I         A                          L FC++H   V+  +C+TC   +CR CT+  H  H F+Y +EA+   R +  +LL    Q +Q I +     + ++   E+      + ++ +  R ++ +EE    + +L+  ++KI   K K+L LQ + +   L KL  +    Q +++ G  ++IL    R+ +++Q+L  +   L P+EDD + +   +   +      G +++   FA L+ A G+  + A  G   S  V+     G+  + G D + A ++ PD      E +D  +GTY + + P + G+H++ VT+  + I  SPF ++V + R Y  +GL    FG  G    +   P+GV+ D EG++ VAD  N+RIQ F P G F + FG+ G R G+F+ P  VA   + RI V D  N+R+Q+F+  G F+ KFG +GTKNG F  PW + ++   + I+V+DT NHRIQ+F  +G F+ K+G +G     F+SP  VA N  + H++V+D  NHR+ +     +  +  G +G  +GQF  P+G+++D    IIV+D  NHR+Q+   +G  +   G++G+G GQ+  P  +++T +G I+V D  NNRI VF
Sbjct:  199 CSSCDEGNAASSRCLDCQEHLCDNCVRAHQRVRLTKDHYIERGPPGPGAAAAAQQLGLGPPFPGPPFSILSVFPERLGFCQHHDDEVLHLYCDTCSVPICRECTMGRHGGHSFIYLQEALQDSRALTIQLLADAQQGRQAIQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARHKKALEER---ECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTISAVQQVLEEGRALDILLARDRMLAQVQELKTVRSLLQPQEDDRVMFTPPDQALYLAIKSFGFVSSG-AFAPLTKATGDGLKRALQGKVASFTVIGYDHDGEPRLSGGDLMSAVVLGPDGNLFGAEVSDQQNGTYVVSYRPQLEGEHLVSVTLCNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGK-ILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGVAFN-HEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLCKFGAQGSGFGQMDRPSGIAITPDGMIVVVDFGNNRILVF 868
The following BLAST results are available for this feature:
BLAST of TCONS_00068110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIN415.035e-11331.95E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens... [more]
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