TCONS_00068113 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068113
Unique NameTCONS_00068113
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068113 ID=TCONS_00068113|Name=TCONS_00068113|organism=Clytia hemisphaerica|type=transcript|length=3332bp
ACTTTGCATCAGTGGCttcattcattaaaaaaattaatgtgCTTTGTCTG
GAAAAGACATCTTTTTATAGATCAATGTGGCAAAgtatttattgaaattt
ttgacactCCTTGTTTTCAAATCACGAAGACATTGAATGAAGAAAGATGA
AGGTGCTGGTGTTTGTAGCCATTGTCTCTTGTTTAGCTGGAGCGAAAGGG
TATGTTGACCAATACGACCGGCGTTTTATGAGAAGATTGGCAGCTTTTGA
CGATGATGTTGAGCACATACCTGAATACGACTATCAAAGGAGTCCAAGGA
AAACGTTTGAGAGTGATGATAATGGAAATTATGCATACGATATTCTAGAC
GATCAAGATGAAGGTGAGAATGAAGAAAGAGCAAACGAAAGAAGCGTTTA
CCGAAGAGGAGGATATCGAATTGTGAATGATGACACCAGACAACAACGAC
GATATTCCTCCATTCCCGATCAAGTAAAAGATTACTTGATGAGAAGACGG
TACGAAGATGTGAGGACCGATCGCCGACCATATTACCAATACAGTGATGT
CGAGAGTGAAGATGGGCTTACATCAGACTATTACGATGGAATaccatttg
aaaaaagaaacaagGCAAACTATGAAAGCCTTTTTAATATGAGGGACATT
GAAAGAAACGCAGCAATAGAAGACAATAAGCCAAAGACGGAAGTGATGGT
GAAGAGAGCCAAGGTGGATGATGGTGGTGAAAATGGTCCTTTTTCATGTG
GCTTTGAAACAGATTGcacgaaatattttcaattcgtCGGAACAAAACTA
CAGTGGAAGAAAAGCACTCGAATTCCTGATCGGAAAAGTTCACATGGTGC
ATCCATGGAGGTGGACGTCAAGAAGACGAACACGAGAAAAGATCGTGCTT
CCATGTCGTACAAATTCAACGTACGTCACGCGGCACAATGTAATGAGTTC
TACTACAACATGTTCGACGAGGAAGGATGTGACGTCGTCAGATTGTTGGT
CACCATGCAATGTGACGGAGAAAACAAGCCAACTGAATTGTTCAGAAAAA
GTTGGAATGAAAAGGGTGGTTGGAATCGTGTGTTGATGAATATCAAAAAA
ACACCAGGAACTATTTGCACTATCACATGGCGAGCATCTCAAAGTTTGTC
ACCAGAAGGCAGGTTGAATTTGGATGACATCACAATGTACAACCGCGCAT
GTCCAAAACCAAATGAAGTGGAGATTCCAAGTGCAGCTAGTTGTACACTG
GAAGGGAACACGTGTGAATGGAAGGAGACTGGGCTCAAGTGGAGTTACTC
CAATAAAACCACGCCTACTCTTTACACTGGTCCTGATCTCTACTATGGAA
AGAAAGTCGGACCTAAATATGCTTTCCTTGAGGCAAGTGGAAGCAACTTC
CCATCCGTCAAAGGTGTATTGACAAGTCGCAAGTTGAAGGGAGACACTGA
CAACTGTTTCCGAATGATGGCTTACATGTATGGTGAGGATTTGGGTACAC
TACAAGTGTCATTCAAAAGTCCAAATGTCACCGATAAAGTGGTGTATGAG
AGGAAAGGCGATCAAGGCAAAAGATGGTTCGAAGCTTTCGTAACCATTCC
AGCTAATACTGAAACCCAGATCGAAATCAAAGGGGTGACAGGGACTGGAC
CTCGTTCTGATATTGCCATTGATGACATTCTGGTTGAACCTGGAAATTGT
GATGAGCAAGGAGAGCTTGTTGGGTGTTCATATGATGTTGCTGGTTCAAA
CGATCTATGCCACTTCACTGGAAACCCAAACTGTGGAGAGGTTGAAATCA
ATATCCCTAATCTTGGTGAGGCCAAGCAGAATCGTTTGGTACAAATtata
ccctaccaagccaaagattttgaaatttcatttgatGTTCAACCTGGCGA
TAAATCTAGCGGTTACGCAAGTTTAGTACACTTGACAACTGGATCAGATT
GTTGTGGAAGGGGTTCACGCCATCCAGCCATTTATTTCCATCCCAACACA
CTGAGAGTGATGGTGTGTACGACCGAAGCTGTCGGAGGTCATAGATGTAT
CATAATGCCAAGAGATATCCCCACTGGTCAAACAAGTCATGTTCAATATA
CTTTCAAAGAAAACCCATCGACACCAGGCCGCGGAGTTTGTGAGTTATTT
GTGAACGGACAAAAGATTGGAGCTCTTAATGTGTACACAGCTGAGTTCCC
CAATGTCAAGATATTCTCTGGAGACATACAAAAGCAACCAGTTAACAACA
AACACATTATCACTAATTTCTTCTACAAGAATACAGCAAAAGTGGAATCA
TGCACGAAAACATGCACTGcaaacgtcatcaaaacaaaggtcaaCAAAAA
GGAAGTCACTGTCGCTAAATACAACAAAACGCAATGTCCGGTATCTTTCG
AAAATGAAATCGAAATCCCACTGTCCATTCGCAACGGACGTTTGGCCTGC
ATGGCGTTCGATTATCTGATTGGACAAAACAAGAAGGGCAATGCTGAATG
TGAGATTAAAGTGCAATACCGTGAGTTCGTTTCCAACAGATGGGTGGCTA
AACCTGTTCACACGTTCAAAGATAAATTCGAGTTCAATGTATGGATGCCC
TTCAGACGTGATTTTGATGTCATCTTGGAAGAAAACAAGAAATACAGGAT
TGGTGTGATTCACAAATTGACCGATCAATGTCCAGAGATTTCTTTTGCCA
ACATGAAACTCTTGGATGGACCTTGCGCTTTACCTGAAACTCATCAAGAA
CACTGATCAATGGAACACGGTACATCACTGAAACTGATGTGAGCAGGATC
GTAAATGGTAAATGGAAAATGGAAAACTTATAACTTAAATAGGATTAGAA
ACTTATAATCGTAATAGTGTTTCAGCGAGTGATAAAAGTAGTTGTTTACT
ATAAGAATCATAAGCCAATGCCACGagtttcaaaattatttcaaaaacat
taacCTTCCCTtcgagatttttcaaaaaacaggCCCTGCGGAAGCGGaaa
gactggggagacttcagccacTTTTgattaaattagattttttttctcaa
atttctagcgaatttaattttattatgagccttcagcctccccactttta
cggtcgttccgccgggcctgaaaAAGATATTTagggaattaatttttctt
ttttcgtgGTTTTACAACCCTAACACAGGCTTAAAAATCGGAACGGTGTT
CGCCCTGAAATTATTCATTCGACTATTCATTatatcatagtataagaaag
ccgcggctggaatatgtaccgcattgtcttttcagttaattgctgttcca
tctctgtctccgagctttataagaacatcgag
Run BLAST on NCBI

transcript from alignment at scaffold_48:170325..182013+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068113 ID=TCONS_00068113|Name=TCONS_00068113|organism=Clytia hemisphaerica|type=transcript|length=11689bp|location=Sequence derived from alignment at scaffold_48:170325..182013+ (Clytia hemisphaerica)
ACTTTGCATCAGTGGCttcattcattaaaaaaattaatgtgCTTTGTCTG
GAAAAGACATCTTTTTATAGATCAATGTGGCAAAgtatttattgaaattt
ttgacactCCTTGTTTTCAAATCACGAAGACATTGAATGAAGAAAGATGA
AGGTGCTGGTGTTTGTAGCCATTGTCTCTTGTTTAGCTGGTAAGGTTTTT
TGTATACATACATTCGCGTTATTGAGTTTCAATCCGAAGGCAAACAAAAG
TGATGTCTTAAAATTCTTTCTTTGCTTCGCGTtttacatttttcgaattt
ctgGCGGTAAATGTAACAACCAATCTAGTGTTTGTTTGCGAGCCACGCAA
CTTACGTCGAAAATGAATACCTTCAAATCCTACATAAGGGATTCGAATCT
AGCTTTGCGTCACGAGGCTTGCAtttctattttaatgaaaactttaaaaa
acgtttaaaaactgTTACTGGACAGCCCAATACAAATCTCAAACAATTTT
GATCCCTACAGGAGCGAAAGGGTATGTTGACCAATACGACCGGCGTTTTA
TGAGAAGATTGGCAGCTTTTGACGATGATGTTGAGCACATACCTGAATAC
GACTATCAAAGGAGTCCAAGGAAAACGTTTGAGAGTGATGATAATGGAAA
TTATGCATACGATATTCTAGGTAAAAATACTTTACAGTGTTAATGCCCAG
TTAAATACAGTTTCATGAAATACAcgcctttttttataaaaatagtgTAC
Ttcggatgagggtcaagtattcttaaaaaattaccaaaattgagggtaaa
atattcttaacgtattcttacttgtttagacttgacttttatTCATAAAC
ACGAGTTTAAGACTTTTGAGTGCACATTGGGagctaaaattatatttctg
cctcaaagtttcNAGACTTTTGAGTGCACATTGGGagctaaaattatatt
tctgtcTCAAAGTTTCAAATTAAGTTTTaacaaaaaacccatttttttct
gttaaccaaatacttTAAAATGCCTGTATTCTCATTAAATTCTGTCAAAC
TTACCctggagggtattcttagggtattcttacgatttggccaattttca
ccctgatgtTGTGATAGAAGATCTTCTTATAATAAAAGCGTGCAAATGGA
TAGAACAAAATGAGAAATGACAATTTAATAACCCGTGTGAGGTACTAGGC
TTGCGAGCTTAGGgagggaaaaaaggaaaattttataaattttacaacct
tgattgggacaaatttgaccaaattttgatcattCCGGGGgctaaaaagt
ttaaattttcctgttttccgacccttaatgggactgaaataggattttct
gatttttacaaTCCTTGGCAtagtgggactttggaagtttaaaaaaggta
cccttaaaaGGGCAGCACATATCCGTACCCTCCATAATTTAATAGTCGAA
TAAAATTTCTTATCTTTATCTCTTGACGGGATCAGATCTCCGTTCAATTT
CTTACTAAAAACCTCAAGACTTGATTTGCGCTAGTCAAGAGCAAAAAAAT
TAGTCAGTGactcatagtgtcctcctggaAGGGTCAGTTCCCTCAAGGAA
AATATCATTGCCAGGTTTTGACCCCCtgtcctgaaaatgaaaaaagtctt
TGCCCTTCTATGGAAAGTTCAACCTCCCACCCTTTTTTACACACGCCCTG
ATTTTGAAAACTGTCACCGTAACATGCTCGTCTGAAGAGTGTTTCTCAAA
AACTATTGTACCGGTTCTTCTGAGAAGAGTGGTAATAATGGAACGATATT
AGTGAACGGAAAACTTTTGacgattttaaaaaaattgagaatattttaca
ctTATATAAGGATCAGTCAGTCTCCAAATAACAGCGTACGAGAAAGCAGG
TTCAAACTGACCATCGTGTTCTTCTTCCATCACAGACGATCAAGATGAAG
GTGAGAATGAAGAAAGAGCAAACGAAAGAAGCGTTTACCGAAGAGGAGGA
TATCGAATTGTGAATGATGACACCAGACAACAACGACGATATTCCTCCAT
TCCCGATCAAGGTAAGGATTTAATCACGCCACATTCAAACTCTAGATCAA
GGAAGAAAATCTGCTATCCTGTAACACCTTTAAATCTTTTCATGTTTTAC
AATCATAGTAAAAGATTACTTGATGAGAAGACGGTACGAAGATGTGAGGA
CCGATCGCCGACCATATTACCAATACAGTGATGTCGAGAGTGAAGGTAAA
AACATCTACTTTCCTTTTTCTATTAAAAATTGGATCAAAAANATACAGTG
ATGACGAGAGTGAAGGTAAAAACATCTACTTTCCTTTTTCTATTAAAAAT
TGGATCAAAAACTCTAAGTCAATGACCAAGAACAATTCCAAAAATAAAGA
AGCGATCGAGAAAACTACACCCTACAAAGACTGAATATACTGTAGATCGG
AGCTCCGTTGAATGTTTTCCTGGTCGCTTAAGAGAATTTTTCGGCTTCCT
TCCTTTTCGTAACTCAACTCTCACCGTCCCTTCGAAGTTTCAGTTATGGA
TATTCGACCGCCATTTCAAATATCACCTTGAAAAAAGTGTGAGGTCAAAA
GTTTATGTATTCAGGAGTAAGCCACTTTGGCTGCAAGTTTTTAGCTCAAC
CTAACGATGATAAGTTCTTATTGATTTCTTTTTACAAGTAGATGGGCTTA
CATCAGACTATTACGATGGAATaccatttgaaaaaagaaacaagGCAAAC
TATGAAAGCCGTAAGTAATTTACGCAGTGCTAAGGGTTTGCGATTGTAAC
GTCCCAGTTTCTTCATATGGTTTGAAGTTTCAAGCATCGGGTGTTTTGAT
TAAGGTTGAAGGGCGTCTGCTTACCGAATTTTGCAACGCTATGCATTTAA
AATCGTTGCTTTTAAAAAGCATTCTATAATCAAACTCGGACATTTTACCG
AGAGTGTCAAGCATCTTCCAATGAAAGATTTCTTTGTAAATGAATCATCT
TTTCCATTTCATTCAGTTTTTAATATGAGGGACATTGAAAGAAACGCAGG
TGAGTCAAAATTCTTCCGTATAATTATTTCctttatttcctttttcaaca
accctcgaattttcaaatgaaacaatTTACCGCTACTTATCTGAGGCCGA
AAATATTACATGAAAGTGCATTAAATTTtgtattgaaaacaaatttatca
aacaaTTTCTGCAAGGTCTTTCGTAGTTTATTATATCATCATTCCTAAAA
CATACCGGGAACATACCATTAAAAACATCAATTCTAAAAGAACCTTTGTC
CTCAAATTAAACAAGAGCAGGATAAAGAGGCTAAAGATGCCAAAAAAAAG
AGAGcttaaagaaaacttttttgattaagCAATAGAAGACAATAAGCCAA
AGACGGAAGTGATGGTGAAGAGAGCCAAGGTGGATGATGGTGGTGAAAAT
GGTCCTTTTTGTAAGTTGACTTCTTGTTCATTTTATGTATCGGTATCAAG
GTATGTTTGTTAGGTGAGCAAAGATATATGACTTCATCTATATCAGAACA
CACTACGAAGCCTGAATACTGTCCATAGATATCTAACACTAGGCGCAGCT
ACTCTGTTCCTAGATGAAGAAAAACAATATGCAATCTTAGCCGAGTTGAc
gtaaatcaatcaatcaatcaatcaatcacatTACAATATATTCCTGCCGT
TTCAGTTTCTAATTGCCTGTACCATACTGTGGTCTACTCAGCAAaatggc
gcattattttgcttcaactgGGGTCAACTGGCATCTCTTGAGAATGACAG
AGTAGCTTTATCTTTTGTTTAGTATAAGATAACTGTGGTACTGTACTGCA
CTGACAGAAAGGCCAAAAAGGACATTTATTTTGGGATTTCTTGATgataa
atttttctttcataatCTACCTATGACAGTATCCTCATAAGTAAGACTAC
AGTCCCACTCCACCCTCTTTATATTCACGAGCCTTTAGATGGATATTTCT
TTTCCAAATACTCTTGCAGCATGTGGCTTTGAAACAGATTGcacgaaata
ttttcaattcgtCGGAACAAAACTACAGTGGAAGAAAAGCACTCGAATTC
CTGATCGGAAAAGTTCACATGGTGCATCCATGGAGGTGGACGTCAAGAAG
GTACGCATTGTGAAATACCCAGCCACGTCCCCTGTGTACTATCGGCTTTT
TATGCTTGCTGGTAGCgccatcagtaacgtaaataaagcctgggatataC
AGGCACGAGGTTCTGTAATACCATATAGGTATCGCGGGGTTGGGGATTTT
AAGTACGGGTAAACGACAATTATTCGTGgacgttaatttttatttttggg
cgTTGATTTTTATTTGTGGGCGTTAGTTTGAACACCAGTAAAACAGTgga
ataaaatagaaaaaaaaatagaagagCTTTTAACTTGCTTTGCCGGGTGT
TTGAATGACTGTTTATAATTAAATTATTCGCTGTTCAGCGGAATTTACCA
AACTAGAACTCTTTTCAGTCCTCGAGAATAACTAAAGATAGTTCAGCCTG
AAAGTCTATACACTTGACAAACCCGTCAAATATAAATATCTTATTTCGGA
GTGGCCAGAAAATCATATTTTTACACATTCAAAATCTGTTGAATACCTTG
TGGAATGTACAATAAAGAATCTTGCAATAATACACATATAATACACACTT
TACTTTTTCAGACGAACACGAGAAAAGATCGTGCTTCCATGTCGTACAAA
TTCAACGTACGTCACGCGGCACAATGTAATGAGTTCTACTACAACATGTT
CGACGAGGAAGGATGTGACGTCGTCAGATTGTTGGTCACCATGCAATGTG
ACGGAGAAAACAAGCCAACTGAATTGTTCAGAAAAAGTTGGAATGAAAAG
GGTGGTTGGAATCGTGTGTTGATGAATATCAAAAAAACACCAGGAACTAT
TTGCACTGTGAGTTGAGTGTTTATACTAAGAAAGAGTGCTAGCATCTATA
CAGCGTGGAGTGCAccatttaaaatctttttggTCTGAAGCCTATATTAC
TATAGCCCCATCGCGGGTACCATCGACTTCGCTAATTCGAGCAAATGGGG
AATCTAATCACTTTCGACTTACAAGATATATCCCAAATATAGAAATTTAT
TATCATATTGGTTATTAATAAGACTGTGTtcgagttttcaaaaatatcca
GGTGGTGCTTAAACAAATCAAAGGAATAGTAATTTCGTTAGCAGCAAAAC
GTATTGTAACCACACCAAACCAACTTCGTTTAGATCACATGGCGAGCATC
TCAAAGTTTGTCACCAGAAGGCAGGTTGAATTTGGATGACATCACAATGT
ACAACCGCGCATGTCCAAAACCAAATGAAGTGGAGATTCCAAGTAGGTTA
ATGTACAACAATACCAATACAATCTCATCTCCACTGTAAACCTTCTGATT
TATGATGGGGCGtataaaagtttatttgatGACATATAGTAGATATAAAA
AGACTAAAACACCCAAAATCTCTCAAGGATTATGAGTTTGTAAAAGTTTA
TTGTCTTGGCTCCATTCTATAAGACTCGActttaatttgaaatattacgc
AGAAAAAATGCAAGgtcaaaagtgttttcggtACTTTGAGTTCTAAACCC
TTCCTGTACCGGTGTCGCTATGCCGACACGGGGTATGGGAAAAAGgcgaa
ttttgattttgaaatcgatttctttttttaaggttACACAAGTATATTAC
AAGTACTTAATGAATTAACAGGATCgaatttcatgaaaataactttattg
aaattttgaccgtttttggACAATATTCTTATTAAGTCATTAGGACAAGA
AAGCACCAAATTTGTATATTGTACCAGATTGTATGTCTTTCCAGGGGtgg
gggcactccaggtaagtgacctaccggacgtgcgacccttaagggtaggt
ttttttggactttggaaagcgcaatgtaagggttgatttgtgagcaagtg
ggaaaaagggcactgtaagggtgtaaaatttgagtaaataccaaattttg
aggtaaaatttgagaaatttcaaaaaattttcgaaaaattgcactataaa
ggtcgattttcagccaaatttttcctgcactgtaagggtccgattttaga
gacttgatttttggccgaacgtacggtcgttttcaaaatcgagtgccccc
ccggaTGTCTTCCAAAGGAACCCATCGTTTCATTCACAAATAGAACAGGA
TACACTAGACTTTTACGATGAAATACCACATGAAAAAGAAACAAggcaaa
atttacattttttgatcAGATTACACAGTGCAAAGGAGGCATGATCATAA
TCCGccaaattcatttttattttatacccAAGACAGTTTGTGAAATATAA
TATGGTTAAATACACTTGTAGCTTGTTTGATTGTTAGACTGGTCCACATT
TCGCCATTTGTTAATCAAACCTTTCTCAAAGAACCCCCTTATATTTTTAG
CTTTGGTTGGAAAACGTCTTGGGTGACATCAGCATAGTTCGGATTCGACA
ATATTGTAATGGAAGGATTTTGACCACCCTCCTTgtcattcaatatcaaa
aaagtccaaaaaaagatcattttgacATTAATACCTCTTCCAACAACAGT
GAAATCATCCTAAAAGGTATTCTTTCGATTCATTTCAGGTGCAGCTAGTT
GTACACTGGAAGGGAACACGTGTGAATGGAAGGAGACTGGGCTCAAGTGG
AGTTACTCCAATAAAACCACGCCTACTCTTTACACTGGTCCTGATCTCTA
CTATGGAAAGAAAGTCGGACGTAAGTTGGATAATATTGAAGACATGTACA
CATTTTttcatataagaacaaactaagaaCATAAGCCTTTGATTGCCAAA
atattaggaacattttaaggctttgcagaccataaaatacctattttctt
aggagaattgacaaaaatactcataaaatggtgaaaataagaacatgtta
agaacattttgaggctttaaaatcaaaaagttaagaacatccaaaggttc
taacaattttggatgttcttacaatAAAAACGTGTAACCTGATGAACCGA
TACCTATCAGTAACCCACTTGGATCTAAAACACATTGGGTTTTGGACTCG
ATCACTGAAGTATACAAATCTTTAACACCACTGTTTTTATTTCACACACT
GTATCAATGTATCGCAAACATAAGAAATACTGGTAAAAACTTTCCATACC
AAACAAACTTATTTAAAATGTTTCTCACATTTTACTACAGCTAAATATGC
TTTCCTTGAGGCAAGTGGAAGCAACTTCCCATCCGTCAAAGGTGTATTGA
CAAGTCGCAAGTTGAAGGGAGACACTGACAACTGTTTCCGAATGATGGCT
TACATGTATGGTGAGGATTTGGGTACACTACAAGTGTCATTCAAAAGTCC
AAATGTCACCGATAAAGTGGTGTATGAGAGGAAAGGCGATCAAGGCAAAA
GATGGTTCGAAGCTTTCGTAACCATTCCAGCTAATACTGAAACCCAGGTA
TCATTACTATGAAACTCTATATTCTTAACAGAAAACAGTGTTAAATTGGT
TTGTTGGTTACAAAGAAAGTGGGTAAAAGAATTTTTCACCCATAGCTACA
GACGATACTTTAATAGACATTCTCCTATTGCTTATAGATCGAAATCAAAG
GGGTGACAGGGACTGGACCTCGTTCTGATATTGCCATTGATGACATTCTG
GTTGAACCTGGAAATTGTGATGAGCAAGGAGAGCTTGTTGGGTGTTCATA
TGATGTTGCTGGTTCAAACGATCTATGCCACTTCACTGGAAACCCAAACT
GTGGAGAGGTTGAAATCAATATCCCTAGTAAGCTCATAGAGTcaatttaa
agttttctttccAAACTTCTCAATGTGCAACTTTTTTGCAATACTACAGT
TCCATCGAAAACCTGAGATATCTGGGTATGTAGATTTCTTGGAAAGCGAT
GATCAAGTTTAATGAATATAACAACCATAGTGTCGTTGGACAGCTCTGCT
ACAAATCTACAAGAAGCAGCGGACTTCTTTTCCTTCTATCTTTTATGGGG
TTAATTACCAACAGTGCACAGTGCGACAACCATTGAGAACGTAACTAAGG
TTTGAAACATTATGTTCTTATCATCAATTCACAGATCTTGGTGAGGCCAA
GCAGAATCGTTTGGTACAAATtataccctaccaagccaaagattttgaaa
tttcatttgatGTTCAACCTGGCGATAAATCTAGCGGTTACGCAAGTTTA
GTACACTTGACAACTGGATCAGATTGTTGTGGAAGGGGTTTGTATTCATT
ACAACGATAAACAATTTTCCCGATCGCAGGACATACCCATGGTTATTAGT
TTACCCCATCTTTCGTATCAGTTTTACAATTTATCTCTTATGTCCTGTAC
ACGACTCTTTCAAAGCAGCCCCTCCTCATTCTGAAAATGCATGAAATATG
AACAATCAACGACTAGTATAATTATGCGTTCTTTACTTGTAGGTTCACGC
CATCCAGCCATTTATTTCCATCCCAACACACTGAGAGTGATGGTGTGTAC
GACCGAAGCTGTCGGAGGTCATAGATGTATCATAATGCCAAGAGATATCC
CCACTGGTCAAACAAGTCATGTTCAATATACTTTCAAAGAAAACGTAAGA
CCTTAAGGATATCTGTACTTAAGTGTTTTTGAAGTATAGAAATTAGATCT
AATAATTATATAGGAAAGGGGTCAATATGAAATTGATAACACGAGGTTCG
TAGATAATTCGCCGTTTGCAGTGTAAAAATTAAACCCCTGATTACAATTT
CATAGGCTCATCATCTCAATTTTTCATCATAGCCATCGACACCAGGCCGC
GGAGTTTGTGAGTTATTTGTGAACGGACAAAAGATTGGAGCTCTTAATGT
GTACACAGCTGAGTTCCCCAACGTCAAGATATTCTCTGGAGACATACAAA
AGCAACCAGTTAACAACAAACACATTATCACTAATTTCTTCTACAAGAAT
ACAGGTAAGGCTGGTCATCGCAAAGACATAGTGTTTTTTCTTGAGTTGAA
AAAAATGTCCCCTGAGATAAGCTTCGAAAAAAGACCAACTCTACCGACTC
AAATTCTAATCGTATTCAATTCAAATGCAAATGTTGAAGAACTTTGTAAT
AGAGGGAAGGGTGTTGCCTGACATAATGAGATTCAGAAACCTAAACGTGT
ACCTGTACTGTGTTATGAATCGCAGCGATGTATATTTgatgaagatgatg
attttctacGAGGTCAATAAATTTGTCAATGTAAACTTTCGAATCTCTCT
TTCTCTCATCAGCAAAAGTGGAATCATGCACGAAGACATGCACTGcaaac
gtcatcaaaacaaaNTACTTGTAGGTTCACGCCATCCAGCCATTTATTTC
CATCCCAACACACTGAGAGTGATGGTGTGTACGACCGAAGCTGTCGGAGG
TCATAGATGTATCATAATGCGAAGAGATATCCCCACTGGTCAAACAAGTC
ATGTTCAATATACTTTCAAAGAAAACGTAAGACCTTAAGGATATCTGTAC
TTAAGTGTTTTTGAAGTATAGAAATTAGATCTAATAATTATATAGGAAAG
GGGTCAATATGAAATTGATAACACGAGGTTCGTAGATAATTCGCCGTTTG
CAGTGTAAAAATTAAACCCCTGATTACAATTTCATAGGCTCATCATCTCA
ATTTTTCATCATAGCCATCGACACCAGGCCGCGGAGTTTGTGAGTTATTT
GTGAACGGACAAAAGATTGGAGCTCTTAATGTGTACACAGCTGAGTTCCC
CAATGTCAAGATATTCTCTGGAGACATACAAAAGCAACCAGTTAACAACA
AACACATTATCACTAATTTCTTCTACAAGAATACAGGTAAGGCTGGTCAT
CGCAAAGACATAGTGTTTTTTCTTGAGTTGAAAAAAATGTCCCCTGAGAT
AAGCTTCGAAAAAAGACCAACTCTACCGACTCAAATTCTAATCGTATTCA
ATTCAAATGCAAATGTTGAAGAACTTTGTAATAGAGGGAAGGGTGTTGCC
TGACATAATGAGATTCAGAAACCTAAACGTGTACCTGTACTGTGTTATGA
ATCGCAGCGATGTATATTTgatgaagatgatgattttctacGAGGTCAAT
AAATTTGTCAATGTAAACTTTCGAATCTCTCTTTCTCTCATCAGCAAAAG
TGGAATCATGCACGAAAACATGCACTGcaaacgtcatcaaaacaaaggtc
aaCAAAAAGGAAGGTGAGAGAACAGGTTTCCCTTTACTTTGGAGCTACAT
GTTATATTGGTGCTCGAgaattcaaaatgaaataaagatACTAAATTCAA
ATTGCGCATTTCCATGAGCTTagatttgaattgaatttatGTGATTCGAT
CCAGGGTGATAGATGTTGtaaagaaagtttcaataatTCTGCACCATTTT
CGTTTATAGTCACTGTCGCTAAATACAACAAAACGCAATGTCCGGTATCT
TTCGAAAATGAAATCGAAATCCCACTGTCCATTCGCAACGGACGTTTGGC
CTGCATGGCGTTCGATTATCTGATTGGACAAAACAAGAAGGGCAATGCTG
AATGTGAGATTAAAGTGCAATACCGTGAGTTCGTTTCCAACAGATGGGTG
GCTAAACCTGTTCACACGTTCAAAGATAAATTCGAGTTCAATGTATGGAT
GCCCTTCAGACGTGATTTTGATGTCATCTTGGAAGAAAACAAGAAATACA
GGGTGAGTGCGGACCGATATATAATTATCTCCATTTGCATATATTCGCTT
GTTTAGACATAAGAACAATATTCaacttaatatttttatttctatattCA
ATCTTAGTAACGGAGGTCTGTAATAGAATTGACTTTTCTCCCTTCCATGC
ATCTTTGAATTATACCTCTCGACCGAAGCTATTCATCAAATGACTTTTTC
ATTAGATTGGTGTGATTCACAAATTGACCGATCAATGTCCAGAGATTTCT
TTTGCCAACATGAAACTCTTGGATGGACCTTGCGCTTTACCTGAAACTCA
TCAAGAACACTGATCAATGGAACACGGTACATCACTGAAACTGATGTGAG
CAGGATCGTAAATGGTAAATGGAAAATGGAAAACTTATAACTTAAATAGG
ATTAGAAACTTATAATCGTAATAGTGTTTCAGCGAGTGATAAAAGTAGTT
GTTTACTATAAGAATCATAAGCCAATGCCACGagtttcaaaattatttca
aaaacattaacCTTCCCTtcgagatttttcaaaaaacaggCCCTGCGGAA
GCGGaaagactggggagacttcagccacTTTTgattaaattagatttttt
ttctcaaatttctagcgaatttaattttattatgagccttcagcctcccc
acttttacggtcgttccgccgggcctgaaaAAGATATTTagggaattaat
ttttcttttttcgtgGTTTTACAACCCTAACACAGGCTTAAAAATCGGAA
CGGTGTTCGCCCTGAAATTATTCATTCGACTATTCATTatatcatagtat
aagaaagccgcggctggaatatgtaccgcattgtcttttcagttaattgc
tgttccatctctgtctccgagctttataagaacatcgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042523XLOC_042523Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068113-exon-scaffold_48-1491911889:170325..170513TCONS_00068113-exon-scaffold_48-1491911889:170325..170513Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:170325..170513TCONS_00068113-exon-scaffold_48-1510915933:170325..170513Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:170325..170513TCONS_00068113-exon-scaffold_48-1575043694:170325..170513Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:170836..170994TCONS_00068113-exon-scaffold_48-1491911889:170836..170994Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:170836..170994TCONS_00068113-exon-scaffold_48-1510915933:170836..170994Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:170836..170994TCONS_00068113-exon-scaffold_48-1575043694:170836..170994Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:172260..172385TCONS_00068113-exon-scaffold_48-1491911889:172260..172385Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:172260..172385TCONS_00068113-exon-scaffold_48-1510915933:172260..172385Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:172260..172385TCONS_00068113-exon-scaffold_48-1575043694:172260..172385Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:172483..172569TCONS_00068113-exon-scaffold_48-1491911889:172483..172569Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:172483..172569TCONS_00068113-exon-scaffold_48-1510915933:172483..172569Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:172483..172569TCONS_00068113-exon-scaffold_48-1575043694:172483..172569Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:173016..173084TCONS_00068113-exon-scaffold_48-1491911889:173016..173084Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:173016..173084TCONS_00068113-exon-scaffold_48-1510915933:173016..173084Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:173016..173084TCONS_00068113-exon-scaffold_48-1575043694:173016..173084Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:173341..173373TCONS_00068113-exon-scaffold_48-1491911889:173341..173373Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:173341..173373TCONS_00068113-exon-scaffold_48-1510915933:173341..173373Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:173341..173373TCONS_00068113-exon-scaffold_48-1575043694:173341..173373Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:173704..173784TCONS_00068113-exon-scaffold_48-1491911889:173704..173784Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:173704..173784TCONS_00068113-exon-scaffold_48-1510915933:173704..173784Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:173704..173784TCONS_00068113-exon-scaffold_48-1575043694:173704..173784Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:174344..174474TCONS_00068113-exon-scaffold_48-1491911889:174344..174474Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:174344..174474TCONS_00068113-exon-scaffold_48-1510915933:174344..174474Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:174344..174474TCONS_00068113-exon-scaffold_48-1575043694:174344..174474Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:175036..175281TCONS_00068113-exon-scaffold_48-1491911889:175036..175281Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:175036..175281TCONS_00068113-exon-scaffold_48-1510915933:175036..175281Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:175036..175281TCONS_00068113-exon-scaffold_48-1575043694:175036..175281Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:175608..175716TCONS_00068113-exon-scaffold_48-1491911889:175608..175716Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:175608..175716TCONS_00068113-exon-scaffold_48-1510915933:175608..175716Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:175608..175716TCONS_00068113-exon-scaffold_48-1575043694:175608..175716Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:177013..177144TCONS_00068113-exon-scaffold_48-1491911889:177013..177144Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:177013..177144TCONS_00068113-exon-scaffold_48-1510915933:177013..177144Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:177013..177144TCONS_00068113-exon-scaffold_48-1575043694:177013..177144Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:177615..177871TCONS_00068113-exon-scaffold_48-1491911889:177615..177871Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:177615..177871TCONS_00068113-exon-scaffold_48-1510915933:177615..177871Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:177615..177871TCONS_00068113-exon-scaffold_48-1575043694:177615..177871Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:178012..178201TCONS_00068113-exon-scaffold_48-1491911889:178012..178201Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:178012..178201TCONS_00068113-exon-scaffold_48-1510915933:178012..178201Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:178012..178201TCONS_00068113-exon-scaffold_48-1575043694:178012..178201Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:178509..178661TCONS_00068113-exon-scaffold_48-1491911889:178509..178661Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:178509..178661TCONS_00068113-exon-scaffold_48-1510915933:178509..178661Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:178509..178661TCONS_00068113-exon-scaffold_48-1575043694:178509..178661Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:178867..179018TCONS_00068113-exon-scaffold_48-1491911889:178867..179018Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:178867..179018TCONS_00068113-exon-scaffold_48-1510915933:178867..179018Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:178867..179018TCONS_00068113-exon-scaffold_48-1575043694:178867..179018Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:180089..180260TCONS_00068113-exon-scaffold_48-1491911889:180089..180260Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:180089..180260TCONS_00068113-exon-scaffold_48-1510915933:180089..180260Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:180089..180260TCONS_00068113-exon-scaffold_48-1575043694:180089..180260Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:180569..180637TCONS_00068113-exon-scaffold_48-1491911889:180569..180637Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:180569..180637TCONS_00068113-exon-scaffold_48-1510915933:180569..180637Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:180569..180637TCONS_00068113-exon-scaffold_48-1575043694:180569..180637Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:180834..181126TCONS_00068113-exon-scaffold_48-1491911889:180834..181126Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:180834..181126TCONS_00068113-exon-scaffold_48-1510915933:180834..181126Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:180834..181126TCONS_00068113-exon-scaffold_48-1575043694:180834..181126Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1491911889:181330..182013TCONS_00068113-exon-scaffold_48-1491911889:181330..182013Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1510915933:181330..182013TCONS_00068113-exon-scaffold_48-1510915933:181330..182013Clytia hemisphaericaexon
TCONS_00068113-exon-scaffold_48-1575043694:181330..182013TCONS_00068113-exon-scaffold_48-1575043694:181330..182013Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:170325..182013 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.4377	30.4725	14.5031	9.31888	0.568101	0.656247	0	0.38779	0.233487	0.231417	0	0.14429	3.90931e-09	0	0	2.27246e-09	0.353693	0.681698	0	0	1.55759	0	7.33467	10.0302	1.08001	1.07475	1.2802	0.971717	4.43944	4.00848
Blast
[Close]
BLAST of TCONS_00068113 vs. Swiss-Prot (Human)
Match: MAMC2 (MAM domain-containing protein 2 OS=Homo sapiens GN=MAMDC2 PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 2.111e-18
Identity = 66/220 (30.00%), Postives = 100/220 (45.45%), Query Frame = 3 
Query: 1062 KGGWNRVLMNIKKTPGTICTITWRASQSLSPEGRLNLDDITMYNRACPKPNEVEIPSAASCTLEGNTCEW---KETGLKWSYSNKTTPTLYTGPDLYYGKKVGPKYAFLEASGSNFPSVKGVLTSRKLKGDT-DNCFRMMAYMYGEDLGTLQVSFKSPNVTDK-VVYERKGDQGKRWFEAFVTIPANTETQIEIKGVTGTGPRSDIAIDDILVEPGNCDE 1706
            +G W +  +  KK P     +     +S    G + LDDIT+   +C    ++  P    CT E + C +   K     W      TPT YTGP   +   VG  Y ++EAS   +   K  L SR L+G +  +C     +MYG   G L V  K    +++ +++ R+G+Q   W  A +      + QI  + + G   RSDIAIDD+  + G C E
Sbjct:  451 RGVWMQAEITFKK-PMPTKVVFMSLCKSFWDCGLVALDDITIQLGSCSSSEKLP-PPPGECTFEQDECTFTQEKRNRSSWHRRRGETPTSYTGPKGDHTTGVG-YYMYIEASHMVYGQ-KARLLSRPLRGVSGKHCLTFFYHMYGGGTGLLSVYLKKEEDSEESLLWRRRGEQSISWLRALIEYSCERQHQIIFEAIRGVSIRSDIAIDDVKFQAGPCGE 666
The following BLAST results are available for this feature:
BLAST of TCONS_00068113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MAMC22.111e-1830.00MAM domain-containing protein 2 OS=Homo sapiens GN... [more]
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