TCONS_00068123 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068123
Unique NameTCONS_00068123
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1203

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068123 ID=TCONS_00068123|Name=TCONS_00068123|organism=Clytia hemisphaerica|type=transcript|length=1203bp
ATTTTCATAAAGAAATTTATCATTCTTTTATACTGTTTTTcaggaaacaa
aaaaatgttgttgGTTTCATGTTGCGTATTACTGGTCAGTGTTGTGTATG
GACGACAGATCGAGGACTTGCAAAACCTTCTCAATGCTGGTAATGTTGGT
TTAGACGATAACCACATGGCGAGAGATTCAGGGAATGAACTAGCAGGAAT
GATAGGTAAACCATCTCAAGATGTGTCAGAAGCAGAGTTTAACAAAGATG
TCAGTTCGTTAGCACAGGCCGGTATTGGAAAGAATTTCGAGGCTAAAGAT
GATTATGATTCATCAATTAAAGAGTTATTAAATTCTTTTCAAGCTGACGA
TAAAAATGGAAATGTTTTTCACCATGGAGAGGAAGATTCTAGTTTTAGCG
CATTCGGTAAAAATCGAAATGGTCTCGGAGCTCTTGGGTCCCTTGAAGAA
GAACTGTTCTTAAAACAAGAGGAGAAAGCTCGGTCACGTGACGGTGGTAT
CGGAGGTATGGGACCGAGTATGTATCCATGCAACGATTACGAAGTAACGA
AAGAAGTAACGATGGGAATATCAATAGGTGGACGAAAAGAAGGCGACTTA
TTAATCGGATTGTTTGGATGTGCTGTACCCAAAACTGTGGCCAATTTTGT
GGCACTCGCCAATCATGAGTATGGATTTGGTTTTCGTGGCAGCAAATTTC
ATCGAGACATCAAGGATTTCATGGTTCAAGGTGGTGATATAACGAACGGA
GATGGAACTGGTGGTAAAAGTATTTATGGTGATCACTTTGctgatgaaaa
tttcaaaatcacccctaacGGTCCAGGTTGGCTATGTATGGCAAACGCTG
GTAAAGATACCAACGATTCACAATTCTTTATCACCACAGCTGACACACCT
TGGCTGGTTGGAAAGCATGTCTGTTTTGGAAAGCTTCTCGATGGATGGTG
TACCGTGGATAAAGTGCAGAACCTGAGAGTTGACCCAAGCAACAATAAAC
CTTACGAGGACGTGGTCATCACAGACAGCCGATCGCTGGATACAAAGCAA
TTCCCTGTCAGTCAACAACCCATCAACCCAAGCACTCGAAACTGCAACTC
TTACTATTAACGATAAAACATCAACGTCTTAAAATCTAAATTGtatataa
aattatatttttatacctATATCTAAAACCTAACAATTCAAACACTGGTA
AAA
Run BLAST on NCBI

protein sequence of TCONS_00068123-protein

>TCONS_00068123-protein ID=TCONS_00068123-protein|Name=TCONS_00068123-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
IFIKKFIILLYCFSGNKKMLLVSCCVLLVSVVYGRQIEDLQNLLNAGNVG
LDDNHMARDSGNELAGMIGKPSQDVSEAEFNKDVSSLAQAGIGKNFEAKD
DYDSSIKELLNSFQADDKNGNVFHHGEEDSSFSAFGKNRNGLGALGSLEE
ELFLKQEEKARSRDGGIGGMGPSMYPCNDYEVTKEVTMGISIGGRKEGDL
LIGLFGCAVPKTVANFVALANHEYGFGFRGSKFHRDIKDFMVQGGDITNG
DGTGGKSIYGDHFADENFKITPNGPGWLCMANAGKDTNDSQFFITTADTP
WLVGKHVCFGKLLDGWCTVDKVQNLRVDPSNNKPYEDVVITDSRSLDTKQ
FPVSQQPINPSTRNCNSYY
Run BLAST on NCBI

transcript from alignment at scaffold_48:256575..259216+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068123 ID=TCONS_00068123|Name=TCONS_00068123|organism=Clytia hemisphaerica|type=transcript|length=2642bp|location=Sequence derived from alignment at scaffold_48:256575..259216+ (Clytia hemisphaerica)
ATTTTCATAAAGAAATTTATCATTCTTTTATACTGTTTTTcaggaaacaa
aaaaatgttgttgGTTTCATGTTGCGTATTACTGGTCAGTGTTGTGTATG
GACGACAGATCGAGGACTTGCAAAACCTTCTCAATGCTGGTAATGTTGGT
TTAGACGATAACCACATGGCGAGAGATTCAGGGAATGAACTAGCAGGAAT
GATAGGTAAACCATCTCAAGATGTGTCAGAAGCAGAGTTTAACAAAGATG
TCAGTTCGTTAGCACAGGCCGGTATTGGAAAGAATTTCGAGGCTAAAGAT
GATTATGATTCATCAATTAAAGAGTTATTAAATTCTTTTCAAGCTGACGA
TAAAAATGGAAATGTTTTTCACCATGGAGAGGAAGGTAATGATTATCGAG
TTCGGTCCCATGCTTGTCGAGTTCAGCGTCGCTTGTTTAAATTTTGAAAG
CGTAAAGAACTCGTCACAAAAGTTNACGAGTTCAACGTCCTTgtttaaat
tttgaaagtgtAAAGAACTCGTCACAAAAGTTAACCAATCTTGGATGCTA
AACCAAGCCAAAAAGCCTTCATTATCTTCTCCATTTTTCATAAAGTCAAT
TTGATAATCCAATGTTTTGCCACTTCCATTCCAGATTCTAGTTTTAGCGC
ATTCGGTAAAAATCGAAATGGTCTCGGAGCTCTTGGGTCCCTTGAAGAAG
AACTGTTCTTAAAACAAGAGGAGAAAGCTCGGTCACGTGACGGTGGTATC
GGAGGTATGGGACCGAGTATGTATCCATGCAACGATTACGAAGTAACGAA
AGAAGTAACGATGGGAATATCAATAGGTGGACGAAAAGAAGGCGACTTAT
TAATCGGATTGTTTGGATGTGCTGTACCCAAAACTGTGGCCAATTTTGTG
GCACTCGCCAATCATGAGGTGAGAATCATTATTACTTGGCTCTCACAAGC
CAAAGTTAATAAACAGCATTAATGACTTGAACGGGCAATAGGGTAtccct
tcaaaatatttttcaatcaataATGCTGACTTCTTATGGAGCNCACTAGG
GCAATAGGGTAtcccttcaaaatatttttcaatccaTAACGCTGACTTCT
TATGGAGCTACTTCGAACTActtcttgtatttttttattctaGTATGGAT
TTGGTTTTCGTGGCAGCAAATTTCATCGAGACATCAAGGATTTCATGGTT
CAAGGTAACGGAACAAAATAGCATCATTTTCTACAAAGAGATCAAACAAC
ATATTCTGCCTTTCTGCCATAAGGAAAACACATTGGACTTTCCAGTTTCT
CACAGTAGGGTGTTATTATACTGGAAGAGAACAATCACTGTAACTCTAAA
GTATGATTCGAAATTTTCAGGCGAATACATTCTAAGATGACACTTTAATT
ACAGATTAACAGTCAATTAGCATTTCTCCTTCTCCCTTCTAACAGGTGGT
GATATAACGAACGGAGATGGAACTGGTGGTAAAAGTATTTATGGTGATCA
CTTTGctgatgaaaatttcaaaatcacccctaacGGTCCAGGTAGGTGCA
TTCTATGCTAATTCAATGATCTCACGACATACAAATGCAACTATCAACCG
TTAAAGCATGGGGAGCTAGAGTTTACCAGAAAGGAGCGACAAATGAATCA
ATGCAATAATTTCAGATATTTTGACGTCATTGCTCGAACCCAGTCTCCTT
GTGTTTTATTGGTTTAggatacccagctggcacacaacgtcgcttcaacg
ttcatctaacgtgatatggacgttgtgaacgttagaaaaacgttgaaaca
acgttgtgtgccagctgggtaggtTCCACTCCTAAtcatcaaaaatgttg
gattttAAAGCAATCACCTTTGTTTCACGTGGAGAAATTTATGTAATGCT
AATTATATCCAGTTATAGAAAGGTGTCAAGTTTGAAATAAGTTTGCTTAA
GTTAGATATAAATCGTTAATCTGATTGTCAATACTAGGTTGGCTATGTAT
GGCAAACGCTGGTAAAGATACCAACGATTCACAATTCTTTATCACCACAG
CTGACACACCTTGGCTGGTTGGAAAGCATGTCTGTTTTGGAAAGCTTCTC
GATGGATGGGTGAGTACGGTTCATCTATACCTTACTTTCATTACATAGAA
CATTTCTGTGAAATCAAGTAGCACCAAATGTCTCGTagttcttttgtctt
ttttggtTAGATAAGACTAAAGCCGTGTTTTATCAGGTCTGTCATCTAAT
ACTTTCATATTGACTCCACTACTGGTTCTAATAAATAAATTTATGTCaat
attgattttgatatacGTATTCTGTTGAAACAGATTTAACGGTGCATTTG
GAcgttattgaataaaaaaattccatCTCTCTTTTAGTGTACCGTGGATA
AAGTGCAGAACCTGAGAGTTGACCCAAGCAACAATAAACCTTACGAGGAC
GTGGTCATCACAGACAGCCGATCGCTGGATACAAAGCAATTCCCTGTCAG
TCAACAACCCATCAACCCAAGCACTCGAAACTGCAACTCTTACTATTAAC
GATAAAACATCAACGTCTTAAAATCTAAATTGtatataaaattatatttt
tatacctATATCTAAAACCTAACAATTCAAACACTGGTAAAA

Coding sequence (CDS) from alignment at scaffold_48:256575..259216+

>TCONS_00068123 ID=TCONS_00068123|Name=TCONS_00068123|organism=Clytia hemisphaerica|type=CDS|length=6660bp|location=Sequence derived from alignment at scaffold_48:256575..259216+ (Clytia hemisphaerica)
ATTTTCATAAAGAAATTTATCATTCTTTTATACTGTTTTTcaggaaacaa
aaaaatgttgttgGTTTCATGTTGCGTATTACTGGTCAGTGTTGTGTATG
GACGACAGATCGAGGACTTGCAAAACCTTCTCAATGCTGGTAATGTTGGT
TTAGACGATAACCACATGGCGAGAGATTCAGGGAATGAACTAGCAGGAAT
GATAGGTAAACCATCTCAAGATGTGTCAGAAGCAGAGTTTAACAAAGATG
TCAGTTCGTTAGCACAGGCCGGTATTGGAAAGAATTTCGAGGCTAAAGAT
GATTATGATTCATCAATTAAAGAGTTATTAAATTCTTTTCAAGCTGACGA
TAAAAATGGAAATGTTTTTCACCATGGAGAGGAAGATTCTAGTTTTAGCG
CATTCGGTAAAAATCGAAATGGTCTCGGAGCTCTTGGGTCCCTTGAAGAA
GAACTGTTCTTAAAACAAGAGGAGAAAGCTCGGTCACGTGACGGTGGTAT
CGGAGGTATGGGACCGAGTATGTATCCATGCAACGATTACGAAGTAACGA
AAGAAGTAACGATGGGAATATCAATAGGTGGACGAAAAGAAGGCGACTTA
TTAATCGGATTGTTTGGATGTGCTGTACCCAAAACTGTGGCCAATTTTGT
GGCACTCGCCAATCATGAGTATGGATTTGGTTTTCGTGGCAGCAAATTTC
ATCGAGACATCAAGGATTTCATGGTTCAAGGTGGTGATATAACGAACGGA
GATGGAACTGGTGGTAAAAGTATTTATGGTGATCACTTTGctgatgaaaa
tttcaaaatcacccctaacGGTCCAGGTTGGCTATGTATGGCAAACGCTG
GTAAAGATACCAACGATTCACAATTCTTTATCACCACAGCTGACACACCT
TGGCTGGTTGGAAAGCATGTCTGTTTTGGAAAGCTTCTCGATGGATGGTG
TACCGTGGATAAAGTGCAGAACCTGAGAGTTGACCCAAGCAACAATAAAC
CTTACGAGGACGTGGTCATCACAGACAGCCGATCGCTGGATACAAAGCAA
TTCCCTGTCAGTCAACAACCCATCAACCCAAGCACTCGAAACTGCAACTC
TTACTATTAAATTTTCATAAAGAAATTTATCATTCTTTTATACTGTTTTT
caggaaacaaaaaaatgttgttgGTTTCATGTTGCGTATTACTGGTCAGT
GTTGTGTATGGACGACAGATCGAGGACTTGCAAAACCTTCTCAATGCTGG
TAATGTTGGTTTAGACGATAACCACATGGCGAGAGATTCAGGGAATGAAC
TAGCAGGAATGATAGGTAAACCATCTCAAGATGTGTCAGAAGCAGAGTTT
AACAAAGATGTCAGTTCGTTAGCACAGGCCGGTATTGGAAAGAATTTCGA
GGCTAAAGATGATTATGATTCATCAATTAAAGAGTTATTAAATTCTTTTC
AAGCTGACGATAAAAATGGAAATGTTTTTCACCATGGAGAGGAAGATTCT
AGTTTTAGCGCATTCGGTAAAAATCGAAATGGTCTCGGAGCTCTTGGGTC
CCTTGAAGAAGAACTGTTCTTAAAACAAGAGGAGAAAGCTCGGTCACGTG
ACGGTGGTATCGGAGGTATGGGACCGAGTATGTATCCATGCAACGATTAC
GAAGTAACGAAAGAAGTAACGATGGGAATATCAATAGGTGGACGAAAAGA
AGGCGACTTATTAATCGGATTGTTTGGATGTGCTGTACCCAAAACTGTGG
CCAATTTTGTGGCACTCGCCAATCATGAGTATGGATTTGGTTTTCGTGGC
AGCAAATTTCATCGAGACATCAAGGATTTCATGGTTCAAGGTGGTGATAT
AACGAACGGAGATGGAACTGGTGGTAAAAGTATTTATGGTGATCACTTTG
ctgatgaaaatttcaaaatcacccctaacGGTCCAGGTTGGCTATGTATG
GCAAACGCTGGTAAAGATACCAACGATTCACAATTCTTTATCACCACAGC
TGACACACCTTGGCTGGTTGGAAAGCATGTCTGTTTTGGAAAGCTTCTCG
ATGGATGGTGTACCGTGGATAAAGTGCAGAACCTGAGAGTTGACCCAAGC
AACAATAAACCTTACGAGGACGTGGTCATCACAGACAGCCGATCGCTGGA
TACAAAGCAATTCCCTGTCAGTCAACAACCCATCAACCCAAGCACTCGAA
ACTGCAACTCTTACTATTAAATTTTCATAAAGAAATTTATCATTCTTTTA
TACTGTTTTTcaggaaacaaaaaaatgttgttgGTTTCATGTTGCGTATT
ACTGGTCAGTGTTGTGTATGGACGACAGATCGAGGACTTGCAAAACCTTC
TCAATGCTGGTAATGTTGGTTTAGACGATAACCACATGGCGAGAGATTCA
GGGAATGAACTAGCAGGAATGATAGGTAAACCATCTCAAGATGTGTCAGA
AGCAGAGTTTAACAAAGATGTCAGTTCGTTAGCACAGGCCGGTATTGGAA
AGAATTTCGAGGCTAAAGATGATTATGATTCATCAATTAAAGAGTTATTA
AATTCTTTTCAAGCTGACGATAAAAATGGAAATGTTTTTCACCATGGAGA
GGAAGATTCTAGTTTTAGCGCATTCGGTAAAAATCGAAATGGTCTCGGAG
CTCTTGGGTCCCTTGAAGAAGAACTGTTCTTAAAACAAGAGGAGAAAGCT
CGGTCACGTGACGGTGGTATCGGAGGTATGGGACCGAGTATGTATCCATG
CAACGATTACGAAGTAACGAAAGAAGTAACGATGGGAATATCAATAGGTG
GACGAAAAGAAGGCGACTTATTAATCGGATTGTTTGGATGTGCTGTACCC
AAAACTGTGGCCAATTTTGTGGCACTCGCCAATCATGAGTATGGATTTGG
TTTTCGTGGCAGCAAATTTCATCGAGACATCAAGGATTTCATGGTTCAAG
GTGGTGATATAACGAACGGAGATGGAACTGGTGGTAAAAGTATTTATGGT
GATCACTTTGctgatgaaaatttcaaaatcacccctaacGGTCCAGGTTG
GCTATGTATGGCAAACGCTGGTAAAGATACCAACGATTCACAATTCTTTA
TCACCACAGCTGACACACCTTGGCTGGTTGGAAAGCATGTCTGTTTTGGA
AAGCTTCTCGATGGATGGTGTACCGTGGATAAAGTGCAGAACCTGAGAGT
TGACCCAAGCAACAATAAACCTTACGAGGACGTGGTCATCACAGACAGCC
GATCGCTGGATACAAAGCAATTCCCTGTCAGTCAACAACCCATCAACCCA
AGCACTCGAAACTGCAACTCTTACTATTAAATTTTCATAAAGAAATTTAT
CATTCTTTTATACTGTTTTTcaggaaacaaaaaaatgttgttgGTTTCAT
GTTGCGTATTACTGGTCAGTGTTGTGTATGGACGACAGATCGAGGACTTG
CAAAACCTTCTCAATGCTGGTAATGTTGGTTTAGACGATAACCACATGGC
GAGAGATTCAGGGAATGAACTAGCAGGAATGATAGGTAAACCATCTCAAG
ATGTGTCAGAAGCAGAGTTTAACAAAGATGTCAGTTCGTTAGCACAGGCC
GGTATTGGAAAGAATTTCGAGGCTAAAGATGATTATGATTCATCAATTAA
AGAGTTATTAAATTCTTTTCAAGCTGACGATAAAAATGGAAATGTTTTTC
ACCATGGAGAGGAAGATTCTAGTTTTAGCGCATTCGGTAAAAATCGAAAT
GGTCTCGGAGCTCTTGGGTCCCTTGAAGAAGAACTGTTCTTAAAACAAGA
GGAGAAAGCTCGGTCACGTGACGGTGGTATCGGAGGTATGGGACCGAGTA
TGTATCCATGCAACGATTACGAAGTAACGAAAGAAGTAACGATGGGAATA
TCAATAGGTGGACGAAAAGAAGGCGACTTATTAATCGGATTGTTTGGATG
TGCTGTACCCAAAACTGTGGCCAATTTTGTGGCACTCGCCAATCATGAGT
ATGGATTTGGTTTTCGTGGCAGCAAATTTCATCGAGACATCAAGGATTTC
ATGGTTCAAGGTGGTGATATAACGAACGGAGATGGAACTGGTGGTAAAAG
TATTTATGGTGATCACTTTGctgatgaaaatttcaaaatcacccctaacG
GTCCAGGTTGGCTATGTATGGCAAACGCTGGTAAAGATACCAACGATTCA
CAATTCTTTATCACCACAGCTGACACACCTTGGCTGGTTGGAAAGCATGT
CTGTTTTGGAAAGCTTCTCGATGGATGGTGTACCGTGGATAAAGTGCAGA
ACCTGAGAGTTGACCCAAGCAACAATAAACCTTACGAGGACGTGGTCATC
ACAGACAGCCGATCGCTGGATACAAAGCAATTCCCTGTCAGTCAACAACC
CATCAACCCAAGCACTCGAAACTGCAACTCTTACTATTAAATTTTCATAA
AGAAATTTATCATTCTTTTATACTGTTTTTcaggaaacaaaaaaatgttg
ttgGTTTCATGTTGCGTATTACTGGTCAGTGTTGTGTATGGACGACAGAT
CGAGGACTTGCAAAACCTTCTCAATGCTGGTAATGTTGGTTTAGACGATA
ACCACATGGCGAGAGATTCAGGGAATGAACTAGCAGGAATGATAGGTAAA
CCATCTCAAGATGTGTCAGAAGCAGAGTTTAACAAAGATGTCAGTTCGTT
AGCACAGGCCGGTATTGGAAAGAATTTCGAGGCTAAAGATGATTATGATT
CATCAATTAAAGAGTTATTAAATTCTTTTCAAGCTGACGATAAAAATGGA
AATGTTTTTCACCATGGAGAGGAAGATTCTAGTTTTAGCGCATTCGGTAA
AAATCGAAATGGTCTCGGAGCTCTTGGGTCCCTTGAAGAAGAACTGTTCT
TAAAACAAGAGGAGAAAGCTCGGTCACGTGACGGTGGTATCGGAGGTATG
GGACCGAGTATGTATCCATGCAACGATTACGAAGTAACGAAAGAAGTAAC
GATGGGAATATCAATAGGTGGACGAAAAGAAGGCGACTTATTAATCGGAT
TGTTTGGATGTGCTGTACCCAAAACTGTGGCCAATTTTGTGGCACTCGCC
AATCATGAGTATGGATTTGGTTTTCGTGGCAGCAAATTTCATCGAGACAT
CAAGGATTTCATGGTTCAAGGTGGTGATATAACGAACGGAGATGGAACTG
GTGGTAAAAGTATTTATGGTGATCACTTTGctgatgaaaatttcaaaatc
acccctaacGGTCCAGGTTGGCTATGTATGGCAAACGCTGGTAAAGATAC
CAACGATTCACAATTCTTTATCACCACAGCTGACACACCTTGGCTGGTTG
GAAAGCATGTCTGTTTTGGAAAGCTTCTCGATGGATGGTGTACCGTGGAT
AAAGTGCAGAACCTGAGAGTTGACCCAAGCAACAATAAACCTTACGAGGA
CGTGGTCATCACAGACAGCCGATCGCTGGATACAAAGCAATTCCCTGTCA
GTCAACAACCCATCAACCCAAGCACTCGAAACTGCAACTCTTACTATTAA
ATTTTCATAAAGAAATTTATCATTCTTTTATACTGTTTTTcaggaaacaa
aaaaatgttgttgGTTTCATGTTGCGTATTACTGGTCAGTGTTGTGTATG
GACGACAGATCGAGGACTTGCAAAACCTTCTCAATGCTGGTAATGTTGGT
TTAGACGATAACCACATGGCGAGAGATTCAGGGAATGAACTAGCAGGAAT
GATAGGTAAACCATCTCAAGATGTGTCAGAAGCAGAGTTTAACAAAGATG
TCAGTTCGTTAGCACAGGCCGGTATTGGAAAGAATTTCGAGGCTAAAGAT
GATTATGATTCATCAATTAAAGAGTTATTAAATTCTTTTCAAGCTGACGA
TAAAAATGGAAATGTTTTTCACCATGGAGAGGAAGATTCTAGTTTTAGCG
CATTCGGTAAAAATCGAAATGGTCTCGGAGCTCTTGGGTCCCTTGAAGAA
GAACTGTTCTTAAAACAAGAGGAGAAAGCTCGGTCACGTGACGGTGGTAT
CGGAGGTATGGGACCGAGTATGTATCCATGCAACGATTACGAAGTAACGA
AAGAAGTAACGATGGGAATATCAATAGGTGGACGAAAAGAAGGCGACTTA
TTAATCGGATTGTTTGGATGTGCTGTACCCAAAACTGTGGCCAATTTTGT
GGCACTCGCCAATCATGAGTATGGATTTGGTTTTCGTGGCAGCAAATTTC
ATCGAGACATCAAGGATTTCATGGTTCAAGGTGGTGATATAACGAACGGA
GATGGAACTGGTGGTAAAAGTATTTATGGTGATCACTTTGctgatgaaaa
tttcaaaatcacccctaacGGTCCAGGTTGGCTATGTATGGCAAACGCTG
GTAAAGATACCAACGATTCACAATTCTTTATCACCACAGCTGACACACCT
TGGCTGGTTGGAAAGCATGTCTGTTTTGGAAAGCTTCTCGATGGATGGTG
TACCGTGGATAAAGTGCAGAACCTGAGAGTTGACCCAAGCAACAATAAAC
CTTACGAGGACGTGGTCATCACAGACAGCCGATCGCTGGATACAAAGCAA
TTCCCTGTCAGTCAACAACCCATCAACCCAAGCACTCGAAACTGCAACTC
TTACTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042525XLOC_042525Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068123-proteinTCONS_00068123-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068123-exon-scaffold_48-1491911889:256575..256959TCONS_00068123-exon-scaffold_48-1491911889:256575..256959Clytia hemisphaericaexon
TCONS_00068123-exon-scaffold_48-1510915933:256575..256959TCONS_00068123-exon-scaffold_48-1510915933:256575..256959Clytia hemisphaericaexon
TCONS_00068123-exon-scaffold_48-1575043694:256575..256959TCONS_00068123-exon-scaffold_48-1575043694:256575..256959Clytia hemisphaericaexon
TCONS_00068123-exon-scaffold_48-1491911889:257209..257492TCONS_00068123-exon-scaffold_48-1491911889:257209..257492Clytia hemisphaericaexon
TCONS_00068123-exon-scaffold_48-1510915933:257209..257492TCONS_00068123-exon-scaffold_48-1510915933:257209..257492Clytia hemisphaericaexon
TCONS_00068123-exon-scaffold_48-1575043694:257209..257492TCONS_00068123-exon-scaffold_48-1575043694:257209..257492Clytia hemisphaericaexon
TCONS_00068123-exon-scaffold_48-1491911889:257718..257778TCONS_00068123-exon-scaffold_48-1491911889:257718..257778Clytia hemisphaericaexon
TCONS_00068123-exon-scaffold_48-1510915933:257718..257778TCONS_00068123-exon-scaffold_48-1510915933:257718..257778Clytia hemisphaericaexon
TCONS_00068123-exon-scaffold_48-1575043694:257718..257778TCONS_00068123-exon-scaffold_48-1575043694:257718..257778Clytia hemisphaericaexon
TCONS_00068123-exon-scaffold_48-1491911889:258020..258115TCONS_00068123-exon-scaffold_48-1491911889:258020..258115Clytia hemisphaericaexon
TCONS_00068123-exon-scaffold_48-1510915933:258020..258115TCONS_00068123-exon-scaffold_48-1510915933:258020..258115Clytia hemisphaericaexon
TCONS_00068123-exon-scaffold_48-1575043694:258020..258115TCONS_00068123-exon-scaffold_48-1575043694:258020..258115Clytia hemisphaericaexon
TCONS_00068123-exon-scaffold_48-1491911889:258562..258683TCONS_00068123-exon-scaffold_48-1491911889:258562..258683Clytia hemisphaericaexon
TCONS_00068123-exon-scaffold_48-1510915933:258562..258683TCONS_00068123-exon-scaffold_48-1510915933:258562..258683Clytia hemisphaericaexon
TCONS_00068123-exon-scaffold_48-1575043694:258562..258683TCONS_00068123-exon-scaffold_48-1575043694:258562..258683Clytia hemisphaericaexon
TCONS_00068123-exon-scaffold_48-1491911889:258962..259216TCONS_00068123-exon-scaffold_48-1491911889:258962..259216Clytia hemisphaericaexon
TCONS_00068123-exon-scaffold_48-1510915933:258962..259216TCONS_00068123-exon-scaffold_48-1510915933:258962..259216Clytia hemisphaericaexon
TCONS_00068123-exon-scaffold_48-1575043694:258962..259216TCONS_00068123-exon-scaffold_48-1575043694:258962..259216Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:256575..259216 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.963681	0.835325	0.606183	0.751203	1.44398	1.33122	15.0052	16.5823	7.94029	6.25885	9.98035	10.3164	26.6335	24.4298	18.3417	41.4331	34.1621	31.5547	0.720884	0.873462	19.2215	19.1383	16.9424	18.0819	13.374	17.5106	2.49597	1.56692	0.752689	1.17049
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002130Cyclophilin-type_PPIase_dom
IPR029000Cyclophilin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
biological_process GO:0000413 protein peptidyl-prolyl isomerization
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
Blast
[Close]
BLAST of TCONS_00068123 vs. Swiss-Prot (Human)
Match: PPIB (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 3.637e-52
Identity = 102/177 (57.63%), Postives = 127/177 (71.75%), Query Frame = 1 
Query:  541 EVTKEVTMGISIGGRKEGDLLIGLFGCAVPKTVANFVALANHEYGFGFRGSKFHRDIKDFMVQXXXXXXXXXXXXKSIYGDHFADENFKITPNGPGWLCMANAGKDTNDSQFFITTADTPWLVGKHVCFGKLLDGWCTVDKVQNLRVDPSNNKPYEDVVITDSRSLDT-KQFPVSQQ 1068
            +VT +V   + IG    G ++ GLFG  VPKTV NFVALA  E GFG++ SKFHR IKDFM+QGGD T GDGTGGKSIYG+ F DENFK+   GPGW+ MANAGKDTN SQFFITT  T WL GKHV FGK+L+G   V KV++ + D S +KP +DV+I D   ++  K F ++++
Sbjct:   41 KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTD-SRDKPLKDVIIADCGKIEVEKPFAIAKE 216
The following BLAST results are available for this feature:
BLAST of TCONS_00068123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPIB3.637e-5257.63Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi... [more]
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