TCONS_00068152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068152
Unique NameTCONS_00068152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068152 ID=TCONS_00068152|Name=TCONS_00068152|organism=Clytia hemisphaerica|type=transcript|length=2735bp
GTAGCCTGCAAGCATCGAGAAAAAAAGTAAGAGAAAAGTTAAGGAATTCA
TAAAGCAACCGGGAATTTACCAAATGACAAACCTCGACGAATTTGATTGG
ATAGAAAAGATTACGTGTCATAAGAAACGTTCATAATTGCACAACCATGA
AATGAGATATTGGTaatcaaaatattgatttcTCGCGGTTTTCATGTAGC
GACATGAATCAAGTGAGCGAGGGAAATGGTATAAGAGTGAAAGCAGAGAG
TAGATGTTTGGCTAAGAAGAGGTGGAGAAGGTGTGCTGTTGAAGGAAAGA
AAAGTGGTCAACACAAGACAAAGAGACGCAATGCAACCAGGTCCGATTTA
TTTTATGAGATCCACGCAAGCTGAGAACACACCTGTGTCAGTGGCCCTGT
AGAATTCCTCACACGGGGAAAAATGGCTGAAATACTATCTCCGGCGAGAA
TATACCAATACATAAGTTTATTTCCAATCACCTTATGGTATTAAGCTCCT
TCATTCTATTTCTCAttgggtcactgagacaggggtgtcagaCATGCTTG
TGCTCCGATTGTCTACTTTATTGATTTGTGAAAAGTACTAATTTGTGATC
AATAAAAGGGGCTCAGACCTTTGACAGACTTCAATCAAGAATAAACCATC
TCTTAAAAATCTGATCTGCGATGATAAAACTGATTGACATGGCTAACTTT
CATCAAATTTCTAGACACTTCTCATAATTTTACGTATAAACCAGATTTCT
CCGAAGATCTGAGCCCTTTTGACCTACctatgtttatttatttcttgttA
TAAATCTTACTCTTCCCTTTTTCAGCAAACAAACTCGACACCAATTGAAA
TCACAAACCGAACAAAATGTTGTAAAGCTGAATTCCTTCAAAGGGTTTAC
TTCAAGTTGATCTACTGTAAAGTACCCTTTGAATTAACGCCTTACTCAAG
CATATTCTCTGATGGTTTCATTTTAGTCAGTTTAGAAAACCAGCTTTTAT
CACAGACTCCAAGGTCTGGATAATAAATAAGCTCTTGTAAATTTATTGAA
GTGAATAGATATTGTTTTTTCCAGATAAAAAGCGTTCACCCGTTGTCAAA
TCTATTGTCAGCTGCCTTACActtatcattttgaaaatacttaACTCTTT
TCCAAATAGAGATGAGTTAACTTTTTTtaatacctttttttctggaaaag
gcCGTACTAAGGAATATGTCCATCCATTTAGGTTGTGTTATCCGTCTTAC
GAGTATACAATTAATCCTTTAGAAATCTGTACAATCTATGGTCAACACCA
TGAGGAGATTGGCAGGCAATTTCATCCAGTAGATAATTGCAACTATTTTT
TGGGCGATTCTGAAGATGCACTGAAAAATGAATTTCCAGTTGGGATATTT
GCTGAGCAAAATGAACGGAGTGATGAAGATATCAAGTATGTTCAAGGAAT
AAAGCAAAGACTGATCGCCGATTGTGACGAGATCTTTGAAAGagaaaatt
caacaaatttgCAAGCGCTGAGCTACGATTCAAGTAATCAGGAATTTATT
GGCTTCACTGAACTTGTAAATTCAGGCGACAAATGGTTATGTAGTGATCA
AGACTCTTCAACTTTTAGCTCGTCAACTTTTGAAGATATTCTCGATGAAT
GCTCGGATTTCTTTTGTTACGACGTACCTGTTGTAAGACAGACCTTCAGT
AGCGAACAAGAAGGTACTCTCTCTAATAATCAACCCATGGATCCAGACTT
GAACCTAGTCATTGCATCGACCAGTACATCAATTGAAATACAAGATGTCA
GTGGGATTTTGAATAGTATACATCCAAATCTTTTGTTTGACTTTGCTTCA
AAATCGAACAGTGCTTCTTCTGAAGACTTTAAGTGTTCAAAAGATGAAAT
GTTGAAAACTAGAGACAAAAAGATCTTTAGAAGAAAGCAGAATAACAAAG
CATCGAGGGAATCTCGACTGcgcaaaaaagaagaatttcaaCGACTTTTA
GAAGAgcaacatttgaaagaaaaacgaaaaaaggaCTTAGAGAATGAAGT
CGCTCATCTACAAGGCGGAATCGAGGAGCTTTACGCATCGCAAGAAAGAA
CATTAGAAACTGCAATTCAGGGAAATCCAAATGTTTCTCTACCTTTGTTT
CTTGAACAATTATTGCAACTTATTCGTCAAAGTGCCATCGAGAAAAACTC
GACGGGTGAGGTTTACTCTAAGACAATCGAGAACGTTattaaaatttatc
aaagaataatggaaagaaattttggtaaGGAGGAAAAAGTGATGGTTCGT
GAATGGCTTCAATCTCACTTGGTCAGTACAAacaatagtttttgaaaata
taattttgattttccgtTTAGAGAAGACAGCCAAACATTATTTTCATAAG
ATTCTTCTATGCAAAGTCATAAATCCCAAAAAACTGAATGATTCTTTAGA
AATctcttggaattttttaaagatacatATACGGGTTTTCaagttttcaa
tcaaaacatggtgataagatttcgaaaaaatgacCAACAAAAGCTGCTGT
AGCATCTTGTAAATAGTATTTCATTTGATTTCAAGTAAATATAGCTTTTT
CATGTATGTGACATTTGTCTACATTTCACTCTAGCTTCATTGGGAGGAGG
GCTGAGCtttttaaaatagcttaaaaacggcTCATGTCTCATGCGATTAA
TTGGTGAAATGGCTCCAAAGTTTATGATATAAGAC
Run BLAST on NCBI

transcript from alignment at scaffold_48:123800..126724-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068152 ID=TCONS_00068152|Name=TCONS_00068152|organism=Clytia hemisphaerica|type=transcript|length=2925bp|location=Sequence derived from alignment at scaffold_48:123800..126724- (Clytia hemisphaerica)
GTAGCCTGCAAGCATCGAGAAAAAAAGTAAGAGAAAAGTTAAGGAATTCA
TAAAGCAACCGGGAATTTACCAAATGACAAACCTCGACGAATTTGATTGG
ATAGAAAAGATTACGTGTCATAAGAAACGTTCATAATTGCACAACCATGA
AATGAGATATTGGTAATCAAAATATTGATTTCTCGCGGTTTTCATGTAGC
GACATGAATCAAGTGAGCGAGGGAAATGGTATAAGAGTGAAAGCAGAGAG
TAGATGTTTGGCTAAGAAGAGGTGGAGAAGGTGTGCTGTTGAAGGAAAGA
AAAGTGGTCAACACAAGACAAAGAGACGCAATGCAACCAGGTCCGATTTA
TTTTATGAGATCCACGCAAGCTGAGAACACACCTGTGTCAGTGGCCCTGT
AGAATTCCTCACACGGGGAAAAATGGCTGAAATACTATCTCCGGCGAGAA
TATACCAATACATAAGTTTATTTCCAATCACCTTATGGTATTAAGCTCCT
TCATTCTATTTCTCATTGGGTCACTGAGACAGGGGTGTCAGACATGCTTG
TGCTCCGATTGTCTACTTTATTGATTTGTGAAAAGTACTAATTTGTGATC
AATAAAAGGGGCTCAGACCTTTGACAGACTTCAATCAAGAATAAACCATC
TCTTAAAAATCTGATCTGCGATGATAAAACTGATTGACATGGCTAACTTT
CATCAAATTTCTAGACACTTCTCATAATTTTACGTATAAACCAGATTTCT
CCGAAGATCTGAGCCCTTTTGACCTACCTATGTTTATTTATTTCTTGTTA
TAAATCTTACTCTTCCCTTTTTCAGCAAACAAACTCGACACCAATTGAAA
TCACAAACCGAACAAAATGTTGTAAAGCTGAATTCCTTCAAAGGGTTTAC
TTCAAGTTGATCTACTGTAAAGTACCCTTTGAATTAACGCCTTACTCAAG
CATATTCTCTGATGGTTTCATTTTAGTCAGTTTAGAAAACCAGCTTTTAT
CACAGACTCCAAGGTCTGGATAATAAATAAGCTCTTGTAAATTTATTGAA
GTGAATAGATATTGTTTTTTCCAGATAAAAAGCGTTCACCCGTTGTCAAA
TCTATTGTCAGCTGCCTTACACTTATCATTTTGAAAATACTTAACTCTTT
TCCAAATAGAGATGAGTTAACTTTTTTTAATACCTTTTTTTCTGGAAAAG
GCCGTACTAAGGAATATGTCCATCCATTTAGGTTGTGTTATCCGTCTTAC
GAGTATACAATTAATCCTTTAGAAATCTGTACAATCTATGGTCAACACCA
TGAGGAGATTGGCAGGCAATTTCATCCAGTAGATAATTGCAACTATTTTT
TGGGCGATTCTGAAGATGCACTGAAAAATGAATTTCCAGTTGGGATATTT
GCTGAGCAAAATGAACGGAGTGATGAAGGTAAGTATGGTGATGAATTTTA
ATATTGTGAGGAATCCACTGATACATATACTGTAATAAAAGATAGACGAA
ATTATGAACAGCTCTGCCAAAATCCTATCTTTTGCAACAACCTTAGTAAA
TTTCAATGTAATCTTATAAATACCAGATTATTTACTGTTTACTAGTCGGG
GTGTTGTCTATTGTTTAGATATCAAGTATGTTCAAGGAATAAAGCAAAGA
CTGATCGCCGATTGTGACGAGATCTTTGAAAGAGAAAATTCAACAAATTT
GCAAGCGCTGAGCTACGATTCAAGTAATCAGGAATTTATTGGCTTCACTG
AACTTGTAAATTCAGGCGACAAATGGTTATGTAGTGATCAAGACTCTTCA
ACTTTTAGCTCGTCAACTTTTGAAGATATTCTCGATGAATGCTCGGATTT
CTTTTGTTACGACGTACCTGTTGTAAGACAGACCTTCAGTAGCGAACAAG
AAGGTACTCTCTCTAATAATCAACCCATGGATCCAGACTTGAACCTAGTC
ATTGCATCGACCAGTACATCAATTGAAATACAAGATGTCAGTGGGATTTT
GAATAGTATACATCCAAATCTTTTGTTTGACTTTGCTTCAAAATCGAACA
GTGCTTCTTCTGAAGACTTTAAGTGTTCAAAAGATGAAATGTTGAAAACT
AGAGACAAAAAGATCTTTAGAAGAAAGCAGAATAACAAAGCATCGAGGGA
ATCTCGACTGCGCAAAAAAGAAGAATTTCAACGACTTTTAGAAGAGCAAC
ATTTGAAAGAAAAACGAAAAAAGGACTTAGAGAATGAAGTCGCTCATCTA
CAAGGCGGAATCGAGGAGCTTTACGCATCGCAAGAAAGAACATTAGAAAC
TGCAATTCAGGGAAATCCAAATGTTTCTCTACCTTTGTTTCTTGAACAAT
TATTGCAACTTATTCGTCAAAGTGCCATCGAGAAAAACTCGACGGGTGAG
GTTTACTCTAAGACAATCGAGAACGTTATTAAAATTTATCAAAGAATAAT
GGAAAGAAATTTTGGTAAGGAGGAAAAAGTGATGGTTCGTGAATGGCTTC
AATCTCACTTGGTCAGTACAAACAATAGTTTTTGAAAATATAATTTTGAT
TTTCCGTTTAGAGAAGACAGCCAAACATTATTTTCATAAGATTCTTCTAT
GCAAAGTCATAAATCCCAAAAAACTGAATGATTCTTTAGAAATCTCTTGG
AATTTTTTAAAGATACATATACGGGTTTTCAAGTTTTCAATCAAAACATG
GTGATAAGATTTCGAAAAAATGACCAACAAAAGCTGCTGTAGCATCTTGT
AAATAGTATTTCATTTGATTTCAAGTAAATATAGCTTTTTCATGTATGTG
ACATTTGTCTACATTTCACTCTAGCTTCATTGGGAGGAGGGCTGAGCTTT
TTAAAATAGCTTAAAAACGGCTCATGTCTCATGCGATTAATTGGTGAAAT
GGCTCCAAAGTTTATGATATAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042539XLOC_042539Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068152-exon-scaffold_48-1575043694:125297..126724TCONS_00068152-exon-scaffold_48-1575043694:125297..126724Clytia hemisphaericaexon
TCONS_00068152-exon-scaffold_48-1575043694:123800..125106TCONS_00068152-exon-scaffold_48-1575043694:123800..125106Clytia hemisphaericaexon
TCONS_00068152-exon-scaffold_48-1510915933:125297..126724TCONS_00068152-exon-scaffold_48-1510915933:125297..126724Clytia hemisphaericaexon
TCONS_00068152-exon-scaffold_48-1510915933:123800..125106TCONS_00068152-exon-scaffold_48-1510915933:123800..125106Clytia hemisphaericaexon
TCONS_00068152-exon-scaffold_48-1491911889:125297..126724TCONS_00068152-exon-scaffold_48-1491911889:125297..126724Clytia hemisphaericaexon
TCONS_00068152-exon-scaffold_48-1491911889:123800..125106TCONS_00068152-exon-scaffold_48-1491911889:123800..125106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:123800..126724 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0410883	0	0	0	0	0.408173	0.311061	0.196233	1.14413	0.302896	0.562473	3.17105	4.39683	9.37987	6.29876	5.37566	6.03452	8.43333	4.70194	3.665	4.65279	3.45024	3.34143	3.588	2.29661	6.97376	4.83137	1.76978	0.960504
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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