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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068154 ID=TCONS_00068154|Name=TCONS_00068154|organism=Clytia hemisphaerica|type=transcript|length=1829bp
AGTTATTTGATTGGCCGATTGGTAGTCACATGTCAAAACAACTTGTTCGT
AGTTACATCATCAGTTTAGTGTTTTGGTATAAATGTAGAGAAAGTGGTTT
TCTTGTCACCGATAAAAAATACTCATTCCATTCAGTCACTGAGTAGCTAT
ATCTTCCTCGGAagacttgattttttttcttgcaaATTAATTTGTTAGAA
GAAATCAAAACCAAACATGCGAGTACATCATACGACAACATCTTGCAATA
TCAAATCTACAAATGTGTAAAGCGAACCTTCTTAGTGTCACCGCGATAGA
GGGAGACCATACGATGGAAGCAAAGACTCAAGCGGTCAATGGTTTCATGC
GTTGCAATGATTTGCATTCTTCCAATATCAAGATGGCTAAAGAAGATCCA
TTCCGACCTGCTGATGAACACCACCATCATCAAGGTTGTCTCATTTGTAG
ACAGGGGGCATCTTTTGGTCAGAAAAGTAGCTCTTTACTCCGCATGCTTT
ATAGCTACCGAAGATTGAGCAAAGCTTTCGCCAAGATGTTCCCGCCGTCA
AGAAGAAAgaataaaagtgaaatattgAGACGTAAAAAGCGCATTGAATT
ACCTAAAAATTGTACAAGGCAACCCAATTCTTCAACAGGAGGAAAGCATA
GATGGCTTCCTCGAACGCCAAAAGCTTAATCAAAACCATCCACCATCACC
AAGCTCGTCCACTGCTTCTGAAACCGAGAGGATCCTGAACATGGTAATGC
CGAAAGGGTTGAATACAGTTGAGCAGGAGCAAAATAGCATTGACATAGAT
GCTAATCTTGCAGCTCCGGACAACTCCGTTACAACAATGTCAACACCTTT
AATAGAACAACATTCGGTTATATCTTGTGATCAAATAAACAAAGCGGATT
TGTTTCTGCATTCTACCCAACAAAATGCTTGTGGCAAGACAAGGCGACGC
CGTAACACAAAAACTACGACCGAAATCCAACAAAAGAAAGCTGAGCGCAG
GAAAAAGAACAATCTCGCTTCCAAAGAACTGCGCCAGAGACGGAAAGAGG
ATTCTGAAAAGTTAACGAAACAAGAAATGGAACTAGAATATGAGAGTAAA
GAACTACGGGACAAAGTGAAATCTCTGGAAGGTGGGATTAATGTAATCAT
CTCAGTTTTCGATGGCATTTCTAGACAGTTGATTCAAAGTAATTCTCTTC
AATTCAGAGAAAATTTCTTGAATCTAATACGTTTGCTAGGTCAAGCGGGT
CAGTCTGGAGATGTAACTTCTCAAACGGCGATCGGAAAATTATTACAAGT
ATATCGTAATCAAGTAGATAGGACTATGGATGATAAAGCCAAGAATAAGC
TTCTCCAATGGTTGAAGTTCAAACTGGATGTTCATGACAGTTGGTAGTAT
TTTaaaatattagtttttttatttttggttttaTCTGAAATACTCCTTTG
CATCTTCCTCTTGttatcaataaatttgaaaagattaaaatttaaaaact
ttgcGACTACTTCATACAGCTCGCAGATAGATTTCTATACACGCACTTTC
AGCAAAAAGGGTCTAAAAAGATTGATATGAGAAGTGTATGGGGTATACTT
TTCGGTCAAAATCGTGCGACTGGTCGTTTTAAATTGATATACGTCTTTAA
AGCATGTTTAATGGATGATTTTCAGATTTCAAGGAATCAGAGGAGTAACA
AAAGATAATGAAATGTAAATAGTTATTATAAATTTTTACGGACATTACAT
AGCACAGTGTGCTTTTCTTTACTATGTATTCATTTATATGTAGTTTGTta
caacaaaatatttcaaaatgttttaaaac Run BLAST on NCBI transcript from alignment at scaffold_48:127983..130715- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068154 ID=TCONS_00068154|Name=TCONS_00068154|organism=Clytia hemisphaerica|type=transcript|length=2733bp|location=Sequence derived from alignment at scaffold_48:127983..130715- (Clytia hemisphaerica)
AGTTATTTGATTGGCCGATTGGTAGTCACATGTCAAAACAACTTGTTCGT
AGTTACATCATCAGTTTAGTGTTTTGGTATAAATGTAGAGAAAGTGGTTT
TCTTGTCACCGATAAAAAATACTCATTCCATTCAGTCACTGAGTAGCTAT
ATCTTCCTCGGAAGACTTGATTTTTTTTCTTGCAAATTAATTTGTTAGAA
GAAATCAAAAGTAAGTGAAACATTTTTTCTACGAATAGATTTCATGATTT
TGATCTAAAGAGCTGGAGAATGTCTTGGTATGGTTAAAGCTTATTTACGC
AAGAAGCTGATCTTCCTCCGATCCTATGGTACCATATCATTACAAGATCT
GACAGATTAAACCCTGGTTACTCTGATCATAATTTGATCAAGCTAACCAC
GCAATGATCAACGAGAACTAACCATGATTATATATAATACCATTTTCCTT
TTCAGCCAAACATGCGAGTACATCATACGACAACATCTTGCAATATCAAA
TCTACAAATGTGTAAAGCGAACCTTCTTAGTGTCACCGCGATAGAGGGAG
ACCATACGATGGAAGCAAAGACTCAAGCGGTCAATGGTTTCATGCGTTGC
AATGATTTGCATTCTTCCAATATCAAGATGGCTAAAGAAGATCCATTCCG
ACCTGCTGATGAACACCACCATCATCAAGGTTGTCTCATTTGTAGACAGG
GGGCATCTTTTGGTCAGAAAAGTAGCTCTTTACTCCGCATGCTTTATAGC
TACCGAAGATTGAGCAAAGCTTTCGCCAAGATGTTCCCGCCGTCAAGAAG
AAAGAATAAAAGTGAAATATTGAGACGTAAAAAGCGCATTGAATTACCTA
AAAATTGTACAAGGCAACCCAATTCTTCAACAGGAGGAAAGCATAGATGG
CTTCCTCGAACGGTACGTATCGGTTATCACAATTGCTATTTCAGTTTCTT
TATTTATCCCATTAACCATCTGGCCCTAGCCTCGAATTATACAAAATTAC
TGCTATAGGTTAAAAAACTATCAGCTCATCGAAAGGAATCCAAAATTATA
AAAATAGAAGAAGCTTCTCGTGGTATCTTTTCCAAAACTTAGGGTTACAA
TTTAAAAATCGCTATATAGTTGTCAGTTTTCCGTCTGCAAATAAAGTTCA
ACCCCAAAGTATATAACAAGGATGACCTGAAAATGGAGACCGTGTTTGCG
CATAGAATGATGGGGTAAAAGCTTTGATTTTTTGTAACTGTTAAAGTGAG
CACCAAATGTTAGAGAAACGTTTATCAAACAAACAAAACGTACTGTGTGG
AACCTTTCTTTCCTTTATTTCTAGACGGCGGTTCCAGGGGCATTACCGAT
GTCCCCGGAAGATCTGAAGATGGGTTTTCCATGCAAAATAATTTTATTAA
TGCAAATGGGTATGCAAAGGGCCCAACCAAAGATTCATCTGTTTTAATTG
ATGGACCGAATTCTTTCAATGTGAATGGGTATGTGAAGGACCCAACTTTA
GACTTTGATTTTTTATTAAAAGAATTTGACCATGAATTTGATTTGGTAAA
TTATATTAATACTGACCATAGCCAAAAGCTTAATCAAAACCATCCACCAT
CACCAAGCTCGTCCACTGCTTCTGAAACCGAGAGGATCCTGAACATGGTA
ATGCCGAAAGGGTTGAATACAGTTGAGCAGGAGCAAAATAGCATTGACAT
AGATGCTAATCTTGCAGCTCCGGACAACTCCGTTACAACAATGTCAACAC
CTTTAATAGAACAACATTCGGTTATATCTTGTGATCAAATAAACAAAGCG
GATTTGTTTCTGCATTCTACCCAACAAAATGCTTGTGGCAAGACAAGGCG
ACGCCGTAACACAAAAACTACGACCGAAATCCAACAAAAGAAAGCTGAGC
GCAGGAAAAAGAACAATCTCGCTTCCAAAGAACTGCGCCAGAGACGGAAA
GAGGATTCTGAAAAGTTAACGAAACAAGAAATGGAACTAGAATATGAGAG
TAAAGAACTACGGGACAAAGTGAAATCTCTGGAAGGTGGGATTAATGTAA
TCATCTCAGTTTTCGATGGCATTTCTAGACAGTTGATTCAAAGTAATTCT
CTTCAATTCAGAGAAAATTTCTTGAATCTAATACGTTTGCTAGGTCAAGC
GGGTCAGTCTGGAGATGTAACTTCTCAAACGGCGATCGGAAAATTATTAC
AAGTATATCGTAATCAAGTAGATAGGACTATGGATGATAAAGCCAAGAAT
AAGCTTCTCCAATGGTTGAAGTTCAAACTGGATGTTCATGACAGTTGGTA
GTATTTTAAAATATTAGTTTTTTTATTTTTGGTTTTATCTGAAATACTCC
TTTGCATCTTCCTCTTGTTATCAATAAATTTGAAAAGATTAAAATTTAAA
AACTTTGCGACTACTTCATACAGCTCGCAGATAGATTTCTATACACGCAC
TTTCAGCAAAAAGGGTCTAAAAAGATTGATATGAGAAGTGTATGGGGTAT
ACTTTTCGGTCAAAATCGTGCGACTGGTCGTTTTAAATTGATATACGTCT
TTAAAGCATGTTTAATGGATGATTTTCAGATTTCAAGGAATCAGAGGAGT
AACAAAAGATAATGAAATGTAAATAGTTATTATAAATTTTTACGGACATT
ACATAGCACAGTGTGCTTTTCTTTACTATGTATTCATTTATATGTAGTTT
GTTACAACAAAATATTTCAAAATGTTTTAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068154-exon-scaffold_48-1575043694:130506..130715 | TCONS_00068154-exon-scaffold_48-1575043694:130506..130715 | Clytia hemisphaerica | exon |
| TCONS_00068154-exon-scaffold_48-1575043694:129804..130260 | TCONS_00068154-exon-scaffold_48-1575043694:129804..130260 | Clytia hemisphaerica | exon |
| TCONS_00068154-exon-scaffold_48-1575043694:127983..129144 | TCONS_00068154-exon-scaffold_48-1575043694:127983..129144 | Clytia hemisphaerica | exon |
| TCONS_00068154-exon-scaffold_48-1510915933:130506..130715 | TCONS_00068154-exon-scaffold_48-1510915933:130506..130715 | Clytia hemisphaerica | exon |
| TCONS_00068154-exon-scaffold_48-1510915933:129804..130260 | TCONS_00068154-exon-scaffold_48-1510915933:129804..130260 | Clytia hemisphaerica | exon |
| TCONS_00068154-exon-scaffold_48-1510915933:127983..129144 | TCONS_00068154-exon-scaffold_48-1510915933:127983..129144 | Clytia hemisphaerica | exon |
| TCONS_00068154-exon-scaffold_48-1491911889:130506..130715 | TCONS_00068154-exon-scaffold_48-1491911889:130506..130715 | Clytia hemisphaerica | exon |
| TCONS_00068154-exon-scaffold_48-1491911889:129804..130260 | TCONS_00068154-exon-scaffold_48-1491911889:129804..130260 | Clytia hemisphaerica | exon |
| TCONS_00068154-exon-scaffold_48-1491911889:127983..129144 | TCONS_00068154-exon-scaffold_48-1491911889:127983..129144 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:127983..130715 - |
Blast
The following BLAST results are available for this feature:
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