TCONS_00068168 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00068168
Unique Name	TCONS_00068168
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1549

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_48:260128..266908-

transcript sequence

>TCONS_00068168 ID=TCONS_00068168|Name=TCONS_00068168|organism=Clytia hemisphaerica|type=transcript|length=1549bp
agaatgatgacatcacatacACAGGGGATGAAGGTTTTTTCGTAGAAGGA
TACGGAGAATATAATGATGAAGATTTGATGATTCCTGAAGAAATTCTCAA
CATTTTATCTCGGTGTCCCTCCTATCCTTTCTCTGATGTCCAAAGAGAGT
TTGTTCCTGATATCAAAGTTCCCTGGAATATACCGATGGATGACTATTCA
CCACCTTCTTATACTTCACCAACTGTCTCAAGTTATTTACCCTGGGTTGA
CCCCGATCCACAGAGCGACAAATTCAGGAAGATTGGGTTCAATATGAGTG
AACGAAAAAGTTGTTGTGGAACGTATGAGCTGAATGGTGACGGTGTACCA
AGGAATCCAGTTGGACGAACGGGTTTGGAAGGTCGTGGATTGCTTTGTCA
CTATGGACCCAATCATTTGCAGTTTGCACTCATTACTAGATGGAAGAAGA
ATATGGACGGGATGGGATACCCAAACCAATTAGAATTGTTGGTTATCGTT
CAAAAGAATTCCAAACTGAGCTTGCCTAATGGTCCGGAAGTGTTGAACAA
TTCGATGTCACCAGAACTACTCCGTTTCTTTTCCAAAACCACTTTGATTA
GTAAAGGTGTCGACATTTCCACTTGTGATAGTGTGTGGATCGGACTGAAC
AAAATCATCGATAAAAGAGAAAAGATATGGGAAGGTTACATGGACGATCG
TCGCAACACAGACCATGCATGGATAGAAGCAACCGTATTTAATTATCACG
ATCCCGATGGAAACATCATTTCACAATTCATATCTGAGCCACCAAGTGAC
GAAGAAGCAGCGAAGAGCTCAAAGAAGATGTATCAATGGAAAGATGTCTG
TATCGATCCACGTCNCCACCAAGTGACGAAGAAGCAGCGAAGAGCTCAAA
GAAGATGTATCAATGGAAAGATGTCTGTATTGATCCACGTCTGTTGGTCG
ATGGCCATTGTTATGGTGAAGCTACTGTCATGGAGTGGCTTGATATCTTG
ATCCAAAATAAAGAACCTTCTCTTAGGTGATCTTTCGATAGATAAGTTAG
ACTGTTTCGTTGTTTGCCCAGGTGGAGTGTTACAAAACAAGAGTACGTCA
AATAATGTGGTATATCGAGTAGCGTTAGTAAGATTACCGAGCAACTtgga
ttgggcttttccagaaaaaaccgtGCACCTCCTGTTggggaggtccaacc
ttttgtgacctacccccttggaattccaggcaattttaggatcatacccc
tctggaattccgaatttttacaaattttcaattattacccccttggaatt
ccgcttatttttgacggattttcctctacccttatggaattccactgcat
ttcaaacctttcccccttggaacggaaatggacctcctcaacagggggtg
caagatttttttctggaaaagcccattgtatATTTTAGATAccgaatttc
attttcaatctaaAGCTTTTCGACCAAGtttgaactttttattgaaaaac
attaatattttccaaaagaatttcaaagttgggaggACTCGAAAAATAC

Run BLAST on NCBI

transcript from alignment at scaffold_48:260128..266908-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00068168 ID=TCONS_00068168|Name=TCONS_00068168|organism=Clytia hemisphaerica|type=transcript|length=6781bp|location=Sequence derived from alignment at scaffold_48:260128..266908- (Clytia hemisphaerica)
AGAATGATGACATCACATACACAGGTACGTTTCTCCCGGTGAGAGAATGA
TGACATCGTATACACAGGTACGTTTCTCCCGTGAGAGAAGGAAAGGGTAT
AGTTTAAACTTTCTTACTATGCCAACTGTTGTTTGAAGAAATCGTACGAA
ACCCATTCACCACGTGCAAACAAAGGACTTCAATGTTCCACATTTTGACA
TGTTTGTTTTGAGCGTAAAAAGTCTTCCAACCACTGACCTGGACAAAGTT
AAATCCGCCATCTCTGAACTCATCTCATCACTTTCAAAAAAAATATCCGA
CCAAAGTTTGCTTAGCCGGGATAAAGAAACTTTGTCCAGGAATATGTTAA
GGTCAGTGCTTCCAACTTGCTCTGAAACGAAGTTCCTTTATCTTAAATTT
TAGGGGATGAAGGTTTTTTCGTAGAAGGATACGGAGAATATAATGATGAA
GATTTGATGATTCCTGAAGAAATTCTCAACATTTTATCTCGGTGTCCCTC
CTATCCTTTCTCTGATGTCCAAAGAGAGTTTGTTCCTGATATCAAAGTTC
CCTGGAATGTAAGTGGTCGTTTTAATGATATTACTCATGTCAAAATTGGT
AATTAAATTATGGTTTCTTTACATATGACGGCTCGGACCCAACAGAACTT
CTCCGAATAGAAGGGGACCACAATTACATCATAACTAAAATGTATTAGGG
TGCTAGCTTGTGCTACTGGAGTCATATTTTTACCCTCGCTACTTTTTACA
TAGTCAAATACGAATGAAAAGTTAGATTATTGGAGAATTCAACATCTGTT
CTTTTGTAGATACCGATGGATGACTATTCACCACCTTCTTATACTTCACC
AACTGTCTCAAGTTATTTACCCTGGGTTGACCCCGATCCACAGTAAGTAT
GTCCTGGGCAGGGTTTGATATGGGCCGAAGAAAGCAAGCTCAGGGGGTGC
ATTCTTTGTTCTAGTGTCCAGATTTATTCAGAACATGTAGGTTAATCCAC
TGGAGATATTATAGTTATAGAATATAATGCGATATTAAATGCTTGATACG
TATACTAGTGAATTCGTGTTATGTATTTTACTTCACTTTGTCTCAGGAGC
GACAAATTCAGGAAGATTGGGTTCAATATGAGTGAACGAAAAAGTTGTTG
TGGAACGTATGAGCTGAATGGTGACGGTGTACCAAGGTAGGTGTCCTGCT
TCACCTTGTTTGTGTTCTTTAGTGTATAGTAAGACGTTCTTTTCTACGAG
CTTGTGACACGTCAAAAAAAAAACTTGAAAGATTCTTTGGTATATGAATT
TTAAGCTTTTATTTCAAAGGGAATCACAGTGGTGTCAAAACTGCGTTTCA
CCACTCGGACATGAATGAAATTCACTGCTTTCGGAAAATATACATGTTCT
AATGTCTTGGACACAGTTTTATATACCCCTCTATTATTATTGAGTTATTT
TTTCCTACTTAAAAAAGTACTTTCATCACTTTCAGGAATCCAGTTGGACG
AACGGGTTTGGAAGGTCGTGGATTGCTTTGTCACTATGGACCCAATCATT
TGCAGTTTGCACTCATTACTAGGTAAAGTATTGTTTGTGATTGATGAATT
TTCATTACTAGGTATGAAGGGATGCATTCCACCTTGTGATATGGTTTTTC
AACTGGTGATGGGTTTGAACCTAGATTAAAAAAAAACTTTTATTCGTAAA
CCATACACATGAAACTTTTTCTAAAGTCTGTTTCTTCGTGAAAATTTACT
TATAGATGGAAGAAGAATATGGACGGGATGGGATACCCAAACCAATTAGA
ATTGTTGGTTATCGTTCAAAAGAATTCCAAACTGAGCTTGCCTAATGTAA
GTAAATTCATTATTCACTTAATTCTGCATGCACAAATAATCTTATTTCAC
TCTCTAATGCAAGAAACAGTGTCTTCATATTTTTTGGACCTACCCGGAGG
TCCTATAAATTAACTGATGTTCGTCCGTTCGTCCGTTCGTTAGTTCGTTA
CCAACTTTTCTCGAGATTGGCTCATTAGTTTTTCCTGATTTTTGGTACAA
AGATGCAAAATGGTAATGCCCAAAATGTGAGGGAGCCCGATTTTCGAAAA
AAAATCATTTCCGGCAGAAAATGCCGGAAATATGCCGAAAAAACCGTTTT
TTTGGCATTTTCTCAAGATTTCATCATTAGTTTTTTCTGATTTTTTGCAC
AAAGATGCGTATTAGCAATGCCCAAAACTTATCCGAATCCGATTTTTGAG
AATAAATCTTTTCCGGTCGAAAATGCCGGAAATATGCCGGAAATCTCCGT
TTTAGCCGATTTTCATCGGACTTTTTCCTTATATTTCGTTGTTTTTTCAC
ACAAAAACATTATTAATAGCAATGTCCACGATCAAGCATGGTTCAATTGT
CAATAAAACTGATTTTTGAATCTGGAATTTTCTAAAAATCGCTGGAACAG
CCGATTTGCGCCGGAAAAACGGTATTTCTTGAATTTCTTGAGCTGTACTT
TATATTTTTTTATGAAATCTTGCACACTGATGCAAAATGTCAATACCTAA
ATTGTGACGGAGTCCGATTTTCGAAAATGCCGGAAAAACTGTTTTTTCAG
CATTTTCTCGAGATTTTATCATTAGTTTTTACTGATTTTTTTGCTCAAAA
TGCGTATTAACAGAAGAATGTAAAGAGCTTCTTGAAAACAATGGAAAAAC
GGCTCGTCATATACCAGTTCTCTTGCCCTTAAGAGAGTTTATGTCGAGTA
AATAGGTTTGTTTTGTTGTCGCTATAAAGAATCTGCATAATTAGCGTGTT
GTGACAAAATTCTTTTGTTTCAAGCCTGATTATGCGCAAACTTGTAGGGC
TTATATTTTGGGTACACCTCTCCTATACGAAAAGGTATCTATATCTTCTT
GCTCAGAATTTCCTAGCGATTCTACTGATATAACCGCATCATGACCGCAC
CATAATATGGAAAGCTAGAGCTCGATAAAATTATAACTTCATCTTGATTT
TACTCGACTTCTGACAGTTTTACACGAACCAATTTAATATCATTGCGTTA
AGAATTTCTTTTGCTGTACATTGGTAAAAATATTGCTCCTCTTATTCTTA
AAAATTGAACTAAAGTCTATTCACGATAAGTGTGCACTCTTTTTTCTTTT
ACCTATAACTTTTGAAGGAATTCTTCAATCTTTATAAATTTGGTATCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT
AACTAATATCTTTCCAACGATACCAAATTTATAAAGATTGGAGAATTCCT
TCAAAAGTTATAGGTAAAAGAAAAAAGAGTGCACACTTATCGTAAATAGA
CTTTAGTAATCGGCAAAAAAGGAAAAAATTTTCATTTTTATCGTCAAATC
ATGTAGAAACCNAAGGAAAAACAAATTTTCATTTTTATCGTCAAATCATG
TAGAAACCGTCCGATTTGTATGGCGAGCCGTCTTTTCTGGACTTTCATTT
AATGACCTAATCAACGTTTCTACAATAGAAGTGATCGTTGAACTTTGAGT
AATCAGAAAAGCTGTTTTTCCATCTCTTTACATTCTTCCTCTGGTATTAA
CAATGCCCAAAACATGGCCGAGTCCGATTTTTGAGAAAAACTTTTTTCCG
GTGAAATATGCCTGAAATATGTACGTTTTTCTAGTTTTTCATTGGACTTT
TCCCTTTTAATTGGTTGTTTTTTCATTCAAAAACATTATTAATAGCAATG
CCCACCATCAAGCATGTTTCAATTTTCAATAAAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCTATTTTCGCCGGAAAGACAGTA
TTTCTTGAATTTCTCGAGCTGTACTTTATATTTTTTTATGAAATTTTGCA
CACTGATGCAAAATGACAATACCTAAAATGAAACGGAGCCTGATTTTCGA
AAAACATTTTTTTCCGGCGGAAAATGCAGGAAATATGCCGGAAAAACCGA
TTTTTTGACATTTTCTCGAATTCTCATTTTTAGTTTTTTCTGATTTTTTG
CAGAAAGATGCGTATTCTTAATGCTCAAAACATGGCCGCGTTCGATTTTT
GAGAAAAAATTTTTTCTGGTTGAAAATGCCGGAAGTCGCCGTTTTTGCAG
ATCTTCATTGGATTTTTTCCTTATATTTCTATGTTCTTCACTCAACATTA
TTGATAACAATGCTCACCATCAAGCATGATTCAACTGTCAATAAAACCGA
CTTTTGCGACCAGAACTTTCTATTTATTTTTTCCCTACAACCCTTCCCTC
TCCCCCCATCATCAATCAATGAGGAATTATTTGCGTTAGGTTATGCATTT
TCGCTAAACGCTATGTTTTCTGACTGGTTTTTTTCATTTTTCTCCTCGCA
TTGCTATTTAACTTTCATCATCAGGTAGCTCCATTCAACATCTAGCTTGT
TCTTGATCTTTCCAACACAGGGTCCGGAAGTGTTGAACAATTCGATGTCA
CCAGAACTACTCCGTTTCTTTTCCAAAACCACTTTGATTAGTAAAGGTGT
CGACATTTCCACTTGTGATAGTGTGTGGATCGGACTGAACAAAATCATCG
ATAAAAGAGAAAAGGTATGTAAATGTACAAATTCTGATCCTCATCAAAAT
ACTGGCAAAATAGCCCATTTTCTACTACTATTTGGATAATCCTTAACATC
AGCAACTTTTATATGTGTTTTATGTGTTAGATAGTAATAATACAGCAGAA
GAACTTTAAGTAGAAATTTCTCTCCACTATGAGAACCAATAAATTCTGGT
GTTCTGGTAATTGATAATGGATTTTCCATAATGCAAGGGTTGCTAAGAGC
CATTGCCCAGATAGTAATTTAGGAATTTAGCTGTATCCCTGTTTAACAGA
CTACATAAAACTGCTAGTTTTTATCAGCTCAGCCAAACATATTTTGTTTA
TGAATATTCTGTAAGTCTCACAGTGAAGTGATTCAATTTTTGATCTCTTT
ACACGAACAAGATATGGGAAGGTTACATGGACGATCGTCGCAACACAGAC
CATGCATGGATAGAAGCAACCGTATTTAATTATCACGATCCCGATGGAAA
CATCATTTCACAATTCATATCTGAGGTAATCATAATTACTAGGTAGAAGC
TCATCAAACTTTTAATCAAATGAAAAGTCTTATGTTTGGTACCCGTCGGA
GATATCGAGTATTGACAGGGTTCAACAGCTGTTTAAAAAATAGTATTGTA
ATTTGTTTCTTTACAAAATAGGGGGCCTCTTTTGGCCCGGTGAACGGCGA
AGGTGAACGGTCCAAGGCGGCATGAAAAAAGTACATATTCACGCTAACCA
ATATACTGCTCTTGATAAGAATTCGCCGTCCTAGAATCTAGAATTCGCCG
GAGTTAAACTTTTTATTCGCCAGAAATGAAATGAATCAAAACCCTTGAAA
GTATAAATTTAAAACGCTTATTTTCCGGATCAAAAATTCAATAGCCCTAA
TCTTCCCATTTCCCTTCAAGCCACCAAGTGACGAAGAAGCAGCGAAGAGC
TCAAAGAAGATGTATCAATGGAAAGATGTCTGTATCGATCCACGTCNCCA
CCAAGTGACGAAGAAGCAGCGAAGAGCTCAAAGAAGATGTATCAATGGAA
AGATGTCTGTATTGATCCACGTCTGTTGGTCGATGGCCATTGTTATGGTG
AAGCTACTGTCATGGAGTGGCTTGATATCTTGATCCAAAATAAAGAACCT
TCTCTTAGGTGATCTTTCGATAGATAAGTTAGACTGTTTCGTTGTTTGCC
CAGGTGGAGTGTTACAAAACAAGAGTACGTCAAATAATGTGGTATATCGA
GTAGCGTTAGTAAGATTACCGAGCAACTTGGATTGGGCTTTTCCAGAAAA
AACCGTGCACCTCCTGTTGGGGAGGTCCAACCTTTTGTGACCTACCCCCT
TGGAATTCCAGGCAATTTTAGGATCATACCCCTCTGGAATTCCGAATTTT
TACAAATTTTCAATTATTACCCCCTTGGAATTCCGCTTATTTTTGACGGA
TTTTCCTCTACCCTTATGGAATTCCACTGCATTTCAAACCTTTCCCCCTT
GGAACGGAAATGGACCTCCTCAACAGGGGGTGCAAGATTTTTTTCTGGAA
AAGCCCATTGTATATTTTAGATACCGAATTTCATTTTCAATCTAAAGCTT
TTCGACCAAGTTTGAACTTTTTATTGAAAAACATTAATATTTTCCAAAAG
AATTTCAAAGTTGGGAGGACTCGAAAAATAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042548	XLOC_042548	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_48	supercontig	scaffold_48:260128..266908 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.273713	0	0	0	0	0.289781	0	0	0	0	1.88948	0	0	0	0.516453	0.000132317	0	2.3115e-05	0	0	1.02982	2.59399e-05

Blast

[Close]

BLAST of TCONS_00068168 vs. Swiss-Prot (Human)
Match: NUDT9 (ADP-ribose pyrophosphatase, mitochondrial OS=Homo sapiens GN=NUDT9 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.575e-30
Identity = 88/243 (36.21%), Postives = 124/243 (51.03%), Query Frame = 3

Query:  108 SRCPSYPFSDVQREFVPDIKVPWNIPMDDXXXXXXXXXXXXXXLPWVDPDPQSDKFRKIGFNMS----ERKSCCGTYELNGDGVPRNPVGRTGLEGRGLLCHYGPNHLQFALITRWKKNMDG------MGYPNQLELLVIVQKN-SKLSLPNGPEVLNNSMSPELLRFFSKTTLISKGVDISTCDSVWIGLNKIIDKRE-KIWEGYMDDRRNTDHAWIEATVFNYHDPDGNIISQFISEPPSD 800
            +R   YP S V+R  VP+ KV W +   DY P  YT+ +V +   W DP      F    FN      ERKS  G YE+  +G PRNP GRTGL GRGLL  +GPNH    +ITRWK++  G      +   + L+ + I +K+  + ++P G       +S  L R F +  L S     +    +   L+K+  +    I++GY+DD RNTD+AW+E    NYHD  G I+   + E   D
Sbjct:   65 ARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRWADPQISESNFSP-KFNEKDGHVERKSKNGLYEIE-NGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDD 305

The following BLAST results are available for this feature:

BLAST of TCONS_00068168 vs. Swiss-Prot (Human)

BLAST of TCONS_00068168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NUDT9	4.575e-30	36.21	ADP-ribose pyrophosphatase, mitochondrial OS=Homo ...	[more]

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TCONS_00068168 (transcript) - C. hemisphaerica