TCONS_00068316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068316
Unique NameTCONS_00068316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1056

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068316 ID=TCONS_00068316|Name=TCONS_00068316|organism=Clytia hemisphaerica|type=transcript|length=1056bp
CAGAATCAAAGGATGAAAGCGATACAACTTATTTTGAGAAAGTTATCATT
GACGGTGTGGAACGTTTTAATGTCTTTTTGACATCTATGAGTGATGAAGA
AGATCGCATCTCAGCTATAGTGATTCCACATGAGTTAGAGTTTCACGCTG
AGTGTAACATGATAAGTGGTGTTATAAATGACGGATGTGATTTAGAACTC
AGTGAAATTGAACTGTTACAGATCCAACAACGACTAGAACCTCTGTTAAT
GAGAATGGATACTGTTGATGACCTGACTCAGATTGATCTCGAGGCGCAGA
ACAGGGAATATTCAAGACGGGAAAGTCATGTTGAACATGAAGTCGAAATG
GAGTGTTTAGTCAAATACAAAGCATCTTTCAAAAGTACTTATACCTCATC
CCCAATTCTTCAGCCTGTCGCTAAAAACAATCCATATTATAATGTCGTTG
TAGGTGAATCAGGCCATCCAGGACCTGCTGATCAAAGGTTTGGTCTAGAG
AAAGAAGGATGGGAGAGTGAAGAAGAAGGGGAAGATATGCTTAGCTTCGA
TGAGAAAGGAGGCTTCCTGATCACCAAGGGTCGAACAAAGAACAATAATG
ATTATTTAACTCCATTAAATGAATTTGCCAAAGATTATACGCGATTCAAG
AGCACCATCCAGAAGATACAGGATGAGGAGATGGAACATCCTGAAACAAT
GGTTGTTGGTGTGAAAGGATATGTTCAAGTCAATGGTGATGAAGATGGGA
AGAAACAGCTGGTGAGATCTGAAACCAACcccaaaaagaagaaattgttC
AACTTTTTCCACAGGAAGAAGCAAGGAGAAACATCAACTTCAAGTCCAGT
TCTGGCAACAAATAGCAAACGTGGTAAACAAGAATCAGCAAGACTTGATT
ACTATCAACCTATGTTTGATATTCACCAAGAAAAACCTCCGTTACCTCCG
AAACCTGCCTCACTGTCAATGTCCTCAACATTGAGTTCGCTTGCAAAGTC
ACCAGCTTCAACAGTTTCTCTGGGAGAAGGCCCATCAACATCTAAAGCGC
AATCAC
Run BLAST on NCBI

transcript from alignment at scaffold_482:464034..465155-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068316 ID=TCONS_00068316|Name=TCONS_00068316|organism=Clytia hemisphaerica|type=transcript|length=1122bp|location=Sequence derived from alignment at scaffold_482:464034..465155- (Clytia hemisphaerica)
CAGAATCAAAGGATGAAAGCGATACAACTTATTTTGAGAAAGTTATCATT
GACGGTGTGGAACGTTTTAATGTCTTTTTGACATCTATGAGTGATGAAGA
AGATCGCATCTCAGCTATAGTGATTCCACATGAGTTAGAGTTTCACGCTG
AGTGTAACATGATAAGTGGTGTTATAAATGACGGATGTGATTTAGAACTC
AGTGAAATTGAACTGTTACAGATCCAACAACGACTAGAACCTCTGTTAAT
GAGAATGGATACTGTTGATGACCTGACTCAGATTGATCTCGAGGCGCAGA
ACAGGGAATATTCAAGACGGGAAAGTCATGTTGAACATGAAGTCGAAATG
GAGTGTTTAGTCAAATACAAAGCATCTTTCAAAAGTACTTATACCTCATC
CCCAATTCTTCAGCCTGTCGCTAAAAACAATCCATATTATAATGTCGTTG
TAGGTGAATCAGGCCATCCAGGACCTGCTGATCAAAGGTTTGGTCTAGAG
AAAGAAGGGTGGGAGAGTGAAGAAGAAGNTCATCCGGAACCTGCTGATCG
AAGGTTTGGTCTAGAGAAAGAAGGATGGGAGAGTGAAGAAGAAGGGGAAG
ATATGCTTAGCTTCGATGAGAAAGGAGGCTTCCTGATCACCAAGGGTCGA
ACAAAGAACAATAATGATTATTTAACTCCATTAAATGAATTTGCCAAAGA
TTATACGCGATTCAAGAGCACCATCCAGAAGATACAGGATGAGGAGATGG
AACATCCTGAAACAATGGTTGTTGGTGTGAAAGGATATGTTCAAGTCAAT
GGTGATGAAGATGGGAAGAAACAGCTGGTGAGATCTGAAACCAACCCCAA
AAAGAAGAAATTGTTCAACTTTTTCCACAGGAAGAAGCAAGGAGAAACAT
CAACTTCAAGTCCAGTTCTGGCAACAAATAGCAAACGTGGTAAACAAGAA
TCAGCAAGACTTGATTACTATCAACCTATGTTTGATATTCACCAAGAAAA
ACCTCCGTTACCTCCGAAACCTGCCTCACTGTCAATGTCCTCAACATTGA
GTTCGCTTGCAAAGTCACCAGCTTCAACAGTTTCTCTGGGAGAAGGCCCA
TCAACATCTAAAGCGCAATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042632XLOC_042632Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068316-exon-scaffold_482-1575043694:464669..465155TCONS_00068316-exon-scaffold_482-1575043694:464669..465155Clytia hemisphaericaexon
TCONS_00068316-exon-scaffold_482-1575043694:464034..464602TCONS_00068316-exon-scaffold_482-1575043694:464034..464602Clytia hemisphaericaexon
TCONS_00068316-exon-scaffold_482-1510915933:464669..465155TCONS_00068316-exon-scaffold_482-1510915933:464669..465155Clytia hemisphaericaexon
TCONS_00068316-exon-scaffold_482-1510915933:464034..464602TCONS_00068316-exon-scaffold_482-1510915933:464034..464602Clytia hemisphaericaexon
TCONS_00068316-exon-scaffold_482-1491911889:464669..465155TCONS_00068316-exon-scaffold_482-1491911889:464669..465155Clytia hemisphaericaexon
TCONS_00068316-exon-scaffold_482-1491911889:464034..464602TCONS_00068316-exon-scaffold_482-1491911889:464034..464602Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:464034..465155 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0214597	0	0.392847	0.0872524	0	0.00177203	0.334734	0.15881	0	0	0.182609	0.414708	0.126886	0	0.194534	0.0700716	0	0	0	0	0	0	0	1.12362	0.276257	0.144502	0	0.0214328
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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