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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068319 ID=TCONS_00068319|Name=TCONS_00068319|organism=Clytia hemisphaerica|type=transcript|length=1273bp
AAAGGACACTCTTACAGCTTcttgaataaaattttatcCATTTGTGATCT
CAGTCTTCACCTAACTTTCACCAGTACAAACAAGCAAGACATGGGTGGTC
AAGACTTTATTGTTATCCTTTTATGTGGATTTTGTCTCAGTTTTTTTGAA
ATGGACTGTGGACGAATCCTTCCATCAAAGGATCAAAAAGAGACATGGAA
AGGAGGAGATTGTACCGTGAAATGGACACTAAAGCCGTCAGCGAATGAAA
AAGCAGATTGGATCACTGTTTATCACCAAGCTGATGAAAACGAATACATC
AAACCAATCTGGGAAGACGTCACCGGAAAAACTACATATGGACGCCAAAA
GTTTATGAAGAACCAAACCTTATCTGTGAATgtacagaaaaatgaaattg
aaatcgTCATTGGAAACATACAAGAGTCGATGATTTTATATCTGACAGCA
GTGTTTCTAAATAAGGATGGGGAAATGAAAGATGGTCCGTTGCAATCGAA
AGTCACCATCACTATCTCGAgtggaatgaaaatcaaaaatggcACTCTGA
TTAAAACATTCGACAAATTTTATCCACGATACGAAGTTTCATTTGAAATT
AAGCCTTATGGTTTGACACCTTGGTCTGATACCAGCATATTGGATTTGAC
AACTGGTGTGTATGATCCGAGTGTTCTAAATGTGCGGTTTATATCCAACT
CAACAACTCTATATATTTGCTCACGTGGTAGTTGGTGTTACATTGGGAAA
GAAGATCTAACGACAGAGAAATACACTCACATCGACATCAAACAATCGAA
AACACAAAATCAAACATATTTCGTTACAATCGCGACAGATGGAACAGAGG
TTTATAGGAAAGTGAACATTCACCCTGAAAACTTCACAAATGTTAAAGTT
TATCAATCAAGTCCGATGTACACCCCAGCTAAAGCCTTCAtcagaaatct
caaaattataaCTAAACCATGACATTTAATAAGCGCTACTCAGGAACTTC
ATCATATTATTTAATACTAAATCGACGGAAAACGagctaatttctttttt
attcatgCTATAAAACCAAAGGCTTAAAAAAGAGTGATGGTCTTTTTTAC
AATACTTTCATAATATTTTAACTGAAAATGTATACAAAGTTTCCCCAAGA
AAAGCGGACAAACTTTTATATcaagtaaaatcctcataattgatgccaaa
ttttatgacttgcatacttaatatttcaatctcaaaaacctATTCTATTa
tcatcttgggaattgaatataTT Run BLAST on NCBI protein sequence of TCONS_00068319-protein >TCONS_00068319-protein ID=TCONS_00068319-protein|Name=TCONS_00068319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
KGHSYSFLNKILSICDLSLHLTFTSTNKQDMGGQDFIVILLCGFCLSFFE
MDCGRILPSKDQKETWKGGDCTVKWTLKPSANEKADWITVYHQADENEYI
KPIWEDVTGKTTYGRQKFMKNQTLSVNVQKNEIEIVIGNIQESMILYLTA
VFLNKDGEMKDGPLQSKVTITISSGMKIKNGTLIKTFDKFYPRYEVSFEI
KPYGLTPWSDTSILDLTTGVYDPSVLNVRFISNSTTLYICSRGSWCYIGK
EDLTTEKYTHIDIKQSKTQNQTYFVTIATDGTEVYRKVNIHPENFTNVKV
YQSSPMYTPAKAFIRNLKIITKP Run BLAST on NCBI transcript from alignment at scaffold_482:517634..521986- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068319 ID=TCONS_00068319|Name=TCONS_00068319|organism=Clytia hemisphaerica|type=transcript|length=4353bp|location=Sequence derived from alignment at scaffold_482:517634..521986- (Clytia hemisphaerica)
AAAGGACACTCTTACAGCTTCTTGAATAAAATTTTATCCATTTGTGATCT
CAGTCTTCACCTAACTTTCACCAGTACAAACAAGCAAGACATGGGTGGTC
AAGACTTTATTGTTATCCTTTTATGTGGATTTTGTCTCAGTTTTTTTGGT
AAGTTANTTTAGTTCTGCTTTTAATTTTATCGAAAGTTCAGGAAAAACTG
AGAAAGATTGCCACCGCAATCAAAAGTGGTAAAACAGTACTGGCTCATGA
ACGTGGCGTAATTAAGTCAAGTTAAAGGAAGAATTTTGGACGGACAAGTT
AAGTGTCCACCTAAATTCGTTTCTTCCGCTATCCACCAAATTAAATACCT
ACCAAATTTAATTAATTTCATATACTTTCCGCTATCCACCAAATTAAATA
CCTACCAAATTTAATTAACTTCATATACTTTCCTCGGATTTGTACTATTT
CCGGCTTTAAAATAGTATTTTTGCATATTCAATAATAATCTTTGACAGAA
AAGTAATACTATTTTTTCAGGCTTCCTGCAGATTAAATTGCCGCTAAATC
TTTTTTTCCTTTTTAATAATAAACTCACCTCTACATCACATTCGTTCTTA
GGTGACAAAAACAATGGCTTTCGATCTCTATACAAATGCTTGTATTGCCG
TTTGAAATTCTCACAACATTCAAGCATGTTTTTCTCTTTATCTGTGTTCG
TCTGGTAAGACGGTGGAAACTTTTTCACTTCAGTTGATGATTTCCTACAA
TAAGAAAAGAAAGAAAGCAAGTCTGTTAATTCTTGGTTTGAACATGTTAG
ACAATTGGGTCCATTAGGCAAATGCAAGAACGCAGAGGGATAGGATTCAT
TTGAAATTCATTTGAATACTTTTTTAATGAATGGTTAACAACATGTTAAA
ATGGGTTGTTTCAAAAACTTTCCTAATCGTGAAGAAATCTCATATTGTGC
TGTGGGAGGAAATGCCTGAAAATCTCTTACTTAATTTTCAGCATCAAATT
ACTATTGGCATTTGGAGACACTCAAGAAGTCTAGTAGCTCATTAGCATTC
CATTCTATTTCACATTACTAAAAGCTATTGTAGAGGAAATTTGACACTGG
ATTTACAAAAAAAAAAAAACTAAAAAAGTACATTGCACGATATCATATTG
CCAAAATAAAAGGACACTCTTACAGCTTCTTGAATAAAATTTTATCCATT
TGTGATCTCAGTCTTCACCTAACTTTCACCAGTACAAACAAGCAAGACAT
GGGTGGTCAAGACTTTATTGTTATCCTTTTATGTGGATTTTGTCTCAGTT
TTTTTGGTAAGTTACCTAACTATCATAACATTAAGAGACTACTTCAATGG
GATAAATTAAATTCAAAAATTAAGTCCCCGCGAAATTTTATCCTATTAAA
GTACAAGGGTTGATTTTATCATAGTGTCCTCCCCCCCCTTTATAAAGGGG
GGGGGGAAACCAATTTTCCAATTTTGAATGACTGAGGGGGGACAGTGAAA
ATTTGAATAGTAAAGGGGGGAAAAAAAAGAGGGGGGAAAACATCGGTAGT
TGGCAAATTTGGTGGGGGGAAGTGTGAAATCACTTCAATTTTATCTCAGC
AACCAAGGTCAGTCCACATGATATCATGTGATTAGATCATGATTGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAGATTTAAAAAAATCAAGAATTTGGTGGGGGGAACAAACCCTGGAGGAC
ACTATGTTTTATGCAAACCCTGGCCCTAAAACTATTTCTTTGAACACAAA
ATGTATATAATAATCCTGATGGAAAAAAAATAGAAATAAGAGGCTATTTT
TTCTGAGGAAATCATCGTCAAGGAAAACACTTATTTCTGCGCATCGACTT
CAGTTTGATAACGAACTACAAAACTGAAGACTATAGTGAGATGCAAAAGC
GCCAAAGTACAGATATACAAGTTGGCACATCATTTGAAGTCGCCAGAGTT
TATTTAATATACTAATTCATTAATTTTTGTAAGGGAACAAAAAGCGCAAA
CTTAAATAATCAAATTATCAAAATCATTTTGTTTACTTCTATTTCACGTA
TCAGAAATGGACTGTGGACGAATCCTTCCATCAAAGGATCAAAAAGAGAC
ATGGAAAGGAGGAGATTGTACCGTGAAATGGACACTAAAGCCGTCAGCGA
ATGAAAAAGCAGATTGGATCACTGTTTATCACCAAGCTGATGAAAACGAA
TACATCAAACCAATCTGGGAAGACGTCACCGGAAAAACTACATATGGACG
CCAAAAGTTTATGAAGAACCAAACCTTATCTGTGAATGTACAGAAAAATG
AAATTGAAATCGTCATTGGAAACATACAAGAGTCGATGATTTTATATCTG
ACAGCAGTGTTTCTAAATAAGGATGGGGAAATGAAAGATGGTCCGTTGCA
ATCGAAAGTCACCATCACTATCTCGAGTGAGTTTCTTCTATCTTTCCTTT
TGAAAGACGTACCTATACTGAATGAAATTCTAAATAAATACATCTTTCAA
ATGATGCCGAAATTATAAGATGTGATACAAAGTTTTGGGACTTCCATTTG
GGACAATCGACGTAATAAATTCACTTTTAGGAACTGTTGCTTCTTCAGTG
AAAATACTACTTTAGGCGTACAAACTTTCCTGAGCAGAAACTTTCACGCT
TTTCGCGAGTTTTTACCTTTTTCGCGATGGTTCATGTCTTTAAACTTTCG
CGAATAGATCTTTTCATAAATTACGTTGCACGAACATCACTTGCCTCGTA
TTCAAACAATTAGCATGGTGATCATGTCTCTTGAGACATAAATGATTTTT
TTATGAATAGGAAGTAGTTTTAATAAAATCCGCTGGGAGTTAATCACCAT
GGCAATAATTTCTAAACGAGGCAAGTGATGTTCGTAACGTAATTTATGGA
AAGATCTATTCGCGAAAGTTTATGCTCGCGTAAAACTCTTGTAAAAAAAG
ATCTAAAAAACTTTTAACTGAGAAGAAAATGTAAAGATTGGAGCACCTTT
TTAGCCTCGTAACTGTAAGTCAAAAGATAAAGCATTTGTACTTCTAAGCC
ATTTTTTTCTAATGGAAATTTTCATTTTAATACCTTGATTCGCGAATAGT
TATGCCTGCGAAAACGATTCTTCCATTAAATTTGCGAAAGTAAAAGTCGT
GAATTTCGAGATTTTTTTACCTCGCTAAAACTTCTGCTCGTGAAAGATTG
TACGCCTAAAGTAGTCGGAATCTATCTTACCAGTAAATTAACTTTCGAGA
CTGTAAGCCCTTACCTCATTGAATAAAATAAAGTTTTTATTTTTTCTAAG
GTGGAATGAAAATCAAAAATGGCACTCTGATTAAAACATTCGACAAATTT
TATCCACGATACGAAGTTTCATTTGAAATTAAGCCTTATGGTTTGACACC
TTGGTCTGATACCAGCATATTGGATTTGACAACTGGTGTGTATGATCCGA
GTGTTCTAAATGTGCGGTTTATATCCAACTCAACAACTCTATATATTTGC
TCACGTGGTAGTTGGTGTTACATTGGGAAAGAAGATCTAACGACAGAGAA
ATACACTCACATCGACATCAAACAATCGAAAACACAAAATCAAACATATT
TCGTTACAATCGCGACAGATGGAACAGAGGTTTATAGGAAAGTGAACATT
CACCCTGAAAACTTCACAAATGTTAAAGTTTATCAATCAAGTCCGATGTA
CACCCCAGCTAAAGCCTTCATCAGAAATCTCAAAATTATAACTAAACCAT
GACATTTAATAAGCGCTACTCAGGAACTTCATCATATTATTTAATACTAA
ATCGACGGAAAACGAGCTAATTTCTTTTTTATTCATGCTATAAAACCAAA
GGCTTAAAAAAGAGTGATGGTCTTTTTTACAATACTTTCATAATATTTTA
ACTGAAAATGTATACAAAGTTTCCCCAAGAAAAGCGGACAAACTTTTATA
TCAAGTAAAATCCTCATAATTGATGCCAAATTTTATGACTTGCATACTTA
ATATTTCAATCTCAAAAACCTATTCTATTATCATCTTGGGAATTGAATAT
ATT Coding sequence (CDS) from alignment at scaffold_482:517634..521986- >TCONS_00068319 ID=TCONS_00068319|Name=TCONS_00068319|organism=Clytia hemisphaerica|type=CDS|length=2916bp|location=Sequence derived from alignment at scaffold_482:517634..521986- (Clytia hemisphaerica)
GTGGAATGAAAATCAAAAATGGCACTCTGATTAAAACATTCGACAAATTT
TATCCACGATACGAAGTTTCATTTGAAATTAAGCCTTATGGTTTGACACC
TTGGTCTGATACCAGCATATTGGATTTGACAACTGGTGTGTATGATCCGA
GTGTTCTAAATGTGCGGTTTATATCCAACTCAACAACTCTATATATTTGC
TCACGTGGTAGTTGGTGTTACATTGGGAAAGAAGATCTAACGACAGAGAA
ATACACTCACATCGACATCAAACAATCGAAAACACAAAATCAAACATATT
TCGTTACAATCGCGACAGATGGAACAGAGGTTTATAGGAAAGTGAACATT
CACCCTGAAAACTTCACAAATGTTAAAGTTTATCAATCAAGTCCGATGTA
CACCCCAGCTAAAGCCTTCATCAGAAATCTCAAAATTATAACTAAACCAT
GAAAATGGACTGTGGACGAATCCTTCCATCAAAGGATCAAAAAGAGACAT
GGAAAGGAGGAGATTGTACCGTGAAATGGACACTAAAGCCGTCAGCGAAT
GAAAAAGCAGATTGGATCACTGTTTATCACCAAGCTGATGAAAACGAATA
CATCAAACCAATCTGGGAAGACGTCACCGGAAAAACTACATATGGACGCC
AAAAGTTTATGAAGAACCAAACCTTATCTGTGAATGTACAGAAAAATGAA
ATTGAAATCGTCATTGGAAACATACAAGAGTCGATGATTTTATATCTGAC
AGCAGTGTTTCTAAATAAGGATGGGGAAATGAAAGATGGTCCGTTGCAAT
CGAAAGTCACCATCACTATCTCGAAAAGGACACTCTTACAGCTTCTTGAA
TAAAATTTTATCCATTTGTGATCTCAGTCTTCACCTAACTTTCACCAGTA
CAAACAAGCAAGACATGGGTGGTCAAGACTTTATTGTTATCCTTTTATGT
GGATTTTGTCTCAGTTTTTTTGGTGGAATGAAAATCAAAAATGGCACTCT
GATTAAAACATTCGACAAATTTTATCCACGATACGAAGTTTCATTTGAAA
TTAAGCCTTATGGTTTGACACCTTGGTCTGATACCAGCATATTGGATTTG
ACAACTGGTGTGTATGATCCGAGTGTTCTAAATGTGCGGTTTATATCCAA
CTCAACAACTCTATATATTTGCTCACGTGGTAGTTGGTGTTACATTGGGA
AAGAAGATCTAACGACAGAGAAATACACTCACATCGACATCAAACAATCG
AAAACACAAAATCAAACATATTTCGTTACAATCGCGACAGATGGAACAGA
GGTTTATAGGAAAGTGAACATTCACCCTGAAAACTTCACAAATGTTAAAG
TTTATCAATCAAGTCCGATGTACACCCCAGCTAAAGCCTTCATCAGAAAT
CTCAAAATTATAACTAAACCATGAAAATGGACTGTGGACGAATCCTTCCA
TCAAAGGATCAAAAAGAGACATGGAAAGGAGGAGATTGTACCGTGAAATG
GACACTAAAGCCGTCAGCGAATGAAAAAGCAGATTGGATCACTGTTTATC
ACCAAGCTGATGAAAACGAATACATCAAACCAATCTGGGAAGACGTCACC
GGAAAAACTACATATGGACGCCAAAAGTTTATGAAGAACCAAACCTTATC
TGTGAATGTACAGAAAAATGAAATTGAAATCGTCATTGGAAACATACAAG
AGTCGATGATTTTATATCTGACAGCAGTGTTTCTAAATAAGGATGGGGAA
ATGAAAGATGGTCCGTTGCAATCGAAAGTCACCATCACTATCTCGAAAAG
GACACTCTTACAGCTTCTTGAATAAAATTTTATCCATTTGTGATCTCAGT
CTTCACCTAACTTTCACCAGTACAAACAAGCAAGACATGGGTGGTCAAGA
CTTTATTGTTATCCTTTTATGTGGATTTTGTCTCAGTTTTTTTGGTGGAA
TGAAAATCAAAAATGGCACTCTGATTAAAACATTCGACAAATTTTATCCA
CGATACGAAGTTTCATTTGAAATTAAGCCTTATGGTTTGACACCTTGGTC
TGATACCAGCATATTGGATTTGACAACTGGTGTGTATGATCCGAGTGTTC
TAAATGTGCGGTTTATATCCAACTCAACAACTCTATATATTTGCTCACGT
GGTAGTTGGTGTTACATTGGGAAAGAAGATCTAACGACAGAGAAATACAC
TCACATCGACATCAAACAATCGAAAACACAAAATCAAACATATTTCGTTA
CAATCGCGACAGATGGAACAGAGGTTTATAGGAAAGTGAACATTCACCCT
GAAAACTTCACAAATGTTAAAGTTTATCAATCAAGTCCGATGTACACCCC
AGCTAAAGCCTTCATCAGAAATCTCAAAATTATAACTAAACCATGAAAAT
GGACTGTGGACGAATCCTTCCATCAAAGGATCAAAAAGAGACATGGAAAG
GAGGAGATTGTACCGTGAAATGGACACTAAAGCCGTCAGCGAATGAAAAA
GCAGATTGGATCACTGTTTATCACCAAGCTGATGAAAACGAATACATCAA
ACCAATCTGGGAAGACGTCACCGGAAAAACTACATATGGACGCCAAAAGT
TTATGAAGAACCAAACCTTATCTGTGAATGTACAGAAAAATGAAATTGAA
ATCGTCATTGGAAACATACAAGAGTCGATGATTTTATATCTGACAGCAGT
GTTTCTAAATAAGGATGGGGAAATGAAAGATGGTCCGTTGCAATCGAAAG
TCACCATCACTATCTCGAAAAGGACACTCTTACAGCTTCTTGAATAAAAT
TTTATCCATTTGTGATCTCAGTCTTCACCTAACTTTCACCAGTACAAACA
AGCAAGACATGGGTGGTCAAGACTTTATTGTTATCCTTTTATGTGGATTT
TGTCTCAGTTTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068319-exon-scaffold_482-1575043694:521839..521986 | TCONS_00068319-exon-scaffold_482-1575043694:521839..521986 | Clytia hemisphaerica | exon |
| TCONS_00068319-exon-scaffold_482-1575043694:519261..519632 | TCONS_00068319-exon-scaffold_482-1575043694:519261..519632 | Clytia hemisphaerica | exon |
| TCONS_00068319-exon-scaffold_482-1575043694:517634..518386 | TCONS_00068319-exon-scaffold_482-1575043694:517634..518386 | Clytia hemisphaerica | exon |
| TCONS_00068319-exon-scaffold_482-1510915933:521839..521986 | TCONS_00068319-exon-scaffold_482-1510915933:521839..521986 | Clytia hemisphaerica | exon |
| TCONS_00068319-exon-scaffold_482-1510915933:519261..519632 | TCONS_00068319-exon-scaffold_482-1510915933:519261..519632 | Clytia hemisphaerica | exon |
| TCONS_00068319-exon-scaffold_482-1510915933:517634..518386 | TCONS_00068319-exon-scaffold_482-1510915933:517634..518386 | Clytia hemisphaerica | exon |
| TCONS_00068319-exon-scaffold_482-1491911889:521839..521986 | TCONS_00068319-exon-scaffold_482-1491911889:521839..521986 | Clytia hemisphaerica | exon |
| TCONS_00068319-exon-scaffold_482-1491911889:519261..519632 | TCONS_00068319-exon-scaffold_482-1491911889:519261..519632 | Clytia hemisphaerica | exon |
| TCONS_00068319-exon-scaffold_482-1491911889:517634..518386 | TCONS_00068319-exon-scaffold_482-1491911889:517634..518386 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:517634..521986 - |
Blast
The following BLAST results are available for this feature:
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