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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068329 ID=TCONS_00068329|Name=TCONS_00068329|organism=Clytia hemisphaerica|type=transcript|length=1490bp
TACCATTCAATATCACCGACCAAACGAAAATACAAATAGATTCCATACAT
ATAGCATGTCGCTACAAAACTTGAAATCCCAAGATTGACCAACTGATTCT
TCGATGGTGGTTTGAATACCAAGAACAAACAAATTAAACTAATAATACCT
TTCATTCGTAGTAATGAAGAATACTCGATTTTAACAATAtaaatctattt
attttttagaaatctcTATTccaaatgaaaattgattaaaaggTCAACGT
GAAGGCTACTGGATTGGGTACAAAATGGTTGCACATGACTTCAATTACAA
AGACTGGCTAGCCAGAcgcaaaacaacaacaaaagttttcatcGTTGTTC
AATTTGCGCTAGGTATCGAATATTCGATGACTTTTACAACATTGTACGTG
TACTTAAAGGACGTTTTACACGTCACAAACAACCTTAATGCTTTCTATAG
CAGTATTTGTGGAATATATGTTTTAACACAGATTGTTGCATCGCTGGTTC
TGTGCCGTTTGTTTGATAAATATCGGACATTGAAACTTTTCTTTATTCTC
GTTACATTTATAACATTTGTTGGAAATGTTTTGTACACAATCCCATACTC
GCCGTATCTCTTGTTAGCCGGACGTTTCCTTTCCGGAACTGGAGGCTGCC
TGAGACCGATTATATTATCTGAATTGACTAGGTCATATCCTAGTGATGAA
GTTATCACTCAAATGTCGGCGATGAGTTTTAGTTACGGCATTGGCTTCAC
AGTTGGTCCGGCGATTAATATTGCTTTTGTGAAAGCACGATTTACACTCA
TTGGTATACCGATCAACTATGCTAATGGAGCTGGATTAGCGTTATCGATC
GCATTCTTGATGGCATTCATTCTGTCCCTTTTCTTTTTGAGTGATCTATC
AAAAGAATTCGACTTGAAAGAAGAAAGGCAGAAGAAAACAACTGACAAGC
TATCAGGGCCACCAAGAGATGAGGAACTTGAAAAAGACAGCTTGGACTCA
ACCAATGAGGATTTTGCTAACGCGCCCCTTTTGAGTGGAAGCTCGTTGGA
AAATTCAACAGAAATTGATAATGTGATCTGTAGGCTGTTCTCTTCAATTG
ACatcgttttgatttttgttttcgcgtttttcgctTACATCACAATGCTA
ATGCAAGATCTTTGGATACCTATGGCAGTCATCAAGTTATTGCATTGGAA
AGTCTTGGAAATAAATCTCATTTTCCTGTTCAATGGCGTCATTATTAGTT
TAATTTGTTTGTTCTTGGTATTCAAACCACCATCGAAGAATCAGTTGGTC
AATCTTGGGATTTCAAGTTTTATAGCGACATGCTATATGTATCGAATCTA
TTTGTATTTTCGTTTGGTCGGTGATATTGAATGGCTTAATGTGACATTAT
GGATTATCAATCCATTCATGAAGTCAACAGTCGTTATTGTAGACGAACTA
TTTACAATGAGTGTTTTGGCCCAAATGGTTCCATCCAANN Run BLAST on NCBI protein sequence of TCONS_00068329-protein >TCONS_00068329-protein ID=TCONS_00068329-protein|Name=TCONS_00068329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
MVAHDFNYKDWLARRKTTTKVFIVVQFALGIEYSMTFTTLYVYLKDVLHV
TNNLNAFYSSICGIYVLTQIVASLVLCRLFDKYRTLKLFFILVTFITFVG
NVLYTIPYSPYLLLAGRFLSGTGGCLRPIILSELTRSYPSDEVITQMSAM
SFSYGIGFTVGPAINIAFVKARFTLIGIPINYANGAGLALSIAFLMAFIL
SLFFLSDLSKEFDLKEERQKKTTDKLSGPPRDEELEKDSLDSTNEDFANA
PLLSGSSLENSTEIDNVICRLFSSIDIVLIFVFAFFAYITMLMQDLWIPM
AVIKLLHWKVLEINLIFLFNGVIISLICLFLVFKPPSKNQLVNLGISSFI
ATCYMYRIYLYFRLVGDIEWLNVTLWIINPFMKSTVVIVDELFTMSVLAQ
MVPSX Run BLAST on NCBI transcript from alignment at scaffold_482:304326..305815 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068329 ID=TCONS_00068329|Name=TCONS_00068329|organism=Clytia hemisphaerica|type=transcript|length=1490bp|location=Sequence derived from alignment at scaffold_482:304326..305815 (Clytia hemisphaerica)
NNTTGGATGGAACCATTTGGGCCAAAACACTCATTGTAAATAGTTCGTCT
ACAATAACGACTGTTGACTTCATGAATGGATTGATAATCCATAATGTCAC
ATTAAGCCATTCAATATCACCGACCAAACGAAAATACAAATAGATTCGAT
ACATATAGCATGTCGCTATAAAACTTGAAATCCCAAGATTGACCAACTGA
TTCTTCGATGGTGGTTTGAATACCAAGAACAAACAAATTAAACTAATAAT
GACGCCATTGAACAGGAAAATGAGATTTATTTCCAAGACTTTCCAATGCA
ATAACTTGATGACTGCCATAGGTATCCAAAGATCTTGCATTAGCATTGTG
ATGTAagcgaaaaacgcgaaaacaaaaatcaaaacgatGTCAATTGAAGA
GAACAGCCTACAGATCACATTATCAATTTCTGTTGAATTTTCCAACGAGC
TTCCACTCAAAAGGGGCGCGTTAGCAAAATCCTCATTGGTTGAGTCCAAG
CTGTCTTTTTCAAGTTCCTCATCTCTTGGTGGCCCTGATAGCTTGTCAGT
TGTTTTCTTCTGCCTTTCTTCTTTCAAGTCGAATTCTTTTGATAGATCAC
TCAAAAAGAAAAGGGACAGAATGAATGCCATCAAGAATGCGATCGATAAC
GCTAATCCAGCTCCATTAGCATAGTTGATCGGTATACCAATGAGTGTAAA
TCGTGCTTTCACAAAAGCAATATTAATCGCCGGACCAACTGTGAAGCCAA
TGCCGTAACTAAAACTCATCGCCGACATTTGAGTGATAACTTCATCACTA
GGATATGACCTAGTCAATTCAGATAATATAATCGGTCTCAGGCAGCCTCC
AGTTCCGGAAAGGAAACGTCCGGCTAACAAGAGATACGGCGAGTATGGGA
TTGTGTACAAAACATTTCCAACAAATGTTATAAATGTAACGAGAATAAAG
AAAAGTTTCAATGTCCGATATTTATCAAACAAACGGCACAGAACCAGCGA
TGCAACAATCTGTGTTAAAACATATATTCCACAAATACTGCTATAGAAAG
CATTAAGGTTGTTTGTGACGTGTAAAACGTCCTTTAAGTACACGTACAAT
GTTGTAAAAGTCATCGAATATTCGATACCTAGCGCAAATTGAACAACgat
gaaaacttttgttgttgttttgcgTCTGGCTAGCCAGTCTTTGTAATTGA
AGTCATGTGCAACCATTTTGTACCCAATCCAGTAGCCTTCACGTTGAcct
tttaatcaattttcatttggAATAgagatttctaaaaaataaatagattt
aTATTGTTAAAATCGAGTATTCTTCATTACTACGAATGAAAGGTATTATT
AGTTTAATTTGTTTGTTCTTGGTATTCAAACCACCATCGAAGAATCAGTT
GGTCAATCTTGGGATTTCAAGTTTTGTAGCGACATGCTATATGTATGGAA
TCTATTTGTATTTTCGTTTGGTCGGTGATATTGAATGGTA Coding sequence (CDS) from alignment at scaffold_482:304326..305815 >TCONS_00068329 ID=TCONS_00068329|Name=TCONS_00068329|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at scaffold_482:304326..305815 (Clytia hemisphaerica)
NTTGGATGGAACCATTTGGGCCAAAACACTCATTGTAAATAGTTCGTCTA
CAATAACGACTGTTGACTTCATGAATGGATTGATAATCCATAATGTCACA
TTAAGCCATTCAATATCACCGACCAAACGAAAATACAAATAGATTCGATA
CATATAGCATGTCGCTATAAAACTTGAAATCCCAAGATTGACCAACTGAT
TCTTCGATGGTGGTTTGAATACCAAGAACAAACAAATTAAACTAATAATG
ACGCCATTGAACAGGAAAATGAGATTTATTTCCAAGACTTTCCAATGCAA
TAACTTGATGACTGCCATAGGTATCCAAAGATCTTGCATTAGCATTGTGA
TGTAagcgaaaaacgcgaaaacaaaaatcaaaacgatGTCAATTGAAGAG
AACAGCCTACAGATCACATTATCAATTTCTGTTGAATTTTCCAACGAGCT
TCCACTCAAAAGGGGCGCGTTAGCAAAATCCTCATTGGTTGAGTCCAAGC
TGTCTTTTTCAAGTTCCTCATCTCTTGGTGGCCCTGATAGCTTGTCAGTT
GTTTTCTTCTGCCTTTCTTCTTTCAAGTCGAATTCTTTTGATAGATCACT
CAAAAAGAAAAGGGACAGAATGAATGCCATCAAGAATGCGATCGATAACG
CTAATCCAGCTCCATTAGCATAGTTGATCGGTATACCAATGAGTGTAAAT
CGTGCTTTCACAAAAGCAATATTAATCGCCGGACCAACTGTGAAGCCAAT
GCCGTAACTAAAACTCATCGCCGACATTTGAGTGATAACTTCATCACTAG
GATATGACCTAGTCAATTCAGATAATATAATCGGTCTCAGGCAGCCTCCA
GTTCCGGAAAGGAAACGTCCGGCTAACAAGAGATACGGCGAGTATGGGAT
TGTGTACAAAACATTTCCAACAAATGTTATAAATGTAACGAGAATAAAGA
AAAGTTTCAATGTCCGATATTTATCAAACAAACGGCACAGAACCAGCGAT
GCAACAATCTGTGTTAAAACATATATTCCACAAATACTGCTATAGAAAGC
ATTAAGGTTGTTTGTGACGTGTAAAACGTCCTTTAAGTACACGTACAATG
TTGTAAAAGTCATCGAATATTCGATACCTAGCGCAAATTGAACAACgatg
aaaacttttgttgttgttttgcgTCTGGCTAGCCAGTCTTTGTAATTGAA
GTCATGTGCAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068329-exon-scaffold_482-1491911889:304326..305815 | TCONS_00068329-exon-scaffold_482-1491911889:304326..305815 | Clytia hemisphaerica | exon |
| TCONS_00068329-exon-scaffold_482-1510915933:304326..305815 | TCONS_00068329-exon-scaffold_482-1510915933:304326..305815 | Clytia hemisphaerica | exon |
| TCONS_00068329-exon-scaffold_482-1575043694:304326..305815 | TCONS_00068329-exon-scaffold_482-1575043694:304326..305815 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:304326..305815 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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