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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068330 ID=TCONS_00068330|Name=TCONS_00068330|organism=Clytia hemisphaerica|type=transcript|length=886bp
GAAAAAGTTGAGGAAAATTGAAGGAAACGTAATTTCTAGACTTCGGtata
tattttaagaaaaactacaaaactgcgaaattgaaaaaatcgaaTCTACC
ATTTCATGTGAATCTGGAAAAAGCAAACCATGGCTTCGAATTTACCGAAC
ACGGAGCTGAAGACGTATGTTGGAGAATGGAAGAGCAAACCTGAGGTAGT
GAAGAACCGATACCTTGATCTACAAAACACAAATATTCAATCTCAACGCT
TACGCACTAGTTCAATGTCATCTTTGGATACAGCCGCATCACCAACAACA
CCCAACTCACCAACGAGTAGATTGATTAATTTTCAACTGATCTCAAAACT
TTCTGGACCGACCATTCAAAATGGCCAGCGACAAAGATCTAACAGCTTAA
GTCTGCCAGACGAAAACCGTAATAAAATAGGACTTCAGAGACAAAATACT
ATATCTGGAGGGAATCACAACCCGTCGAATGCAGAAGATGGTGGAACCAG
TGGTTTAACAAAAAGTGGTAATGTTTTCAGAGGACGAAAAAGATCGATTA
GTTTTACTGGTAACTCTGCAGATTTTTATGACTGatttaatttttggaaa
tatttttgaatgaaactttcaatggtggctacacgctttttttataagaa
tggtgttttttcatgcatcatggatattcttaatttttttgggaaaataa
tcctaaaaattcaaattcaaacaaaatttaacaagAAATACTCAACTGAa
gcaaaaaatggcatttttgtgaaaattttgggaaaaactagcaatttaca
gttaaataTGCTCTGTAAATAGCATTCTTAAGTTTTGTTGcctaattcca
tgatggtgatattcttacgatattgttaattttttg Run BLAST on NCBI protein sequence of TCONS_00068330-protein >TCONS_00068330-protein ID=TCONS_00068330-protein|Name=TCONS_00068330-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MASNLPNTELKTYVGEWKSKPEVVKNRYLDLQNTNIQSQRLRTSSMSSLD
TAASPTTPNSPTSRLINFQLISKLSGPTIQNGQRQRSNSLSLPDENRNKI
GLQRQNTISGGNHNPSNAEDGGTSGLTKSGNVFRGRKRSISFTGNSADFY
D Run BLAST on NCBI transcript from alignment at scaffold_482:329293..330178 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068330 ID=TCONS_00068330|Name=TCONS_00068330|organism=Clytia hemisphaerica|type=transcript|length=886bp|location=Sequence derived from alignment at scaffold_482:329293..330178 (Clytia hemisphaerica)
caaaaaattaacaatatcgtaagaatatcaccatcatggaattaggCAAC
AAAACTTAAGAATGCTATTTACAGAGCAtatttaactgtaaattgctagt
ttttcccaaaattttcacaaaaatgccattttttgctTCAGTTGAGTATT
Tcttgttaaattttgtttgaatttgaatttttaggattattttcccaaaa
aaattaagaatatccatgatgcatgaaaaaacaccattcttataaaaaaa
gcgtgtagccaccattgaaagtttcattcaaaaatatttccaaaaattaa
atCAGTCATAAAAATCTGCAGAGTTACCAGTAAAACTAATCGATCTTTTT
CGTCCTCTGAAAACATTACCACTTTTTGTTAAACCACTGGTTCCACCATC
TTCTGCATTCGACGGGTTGTGATTCCCTCCAGATATAGTATTTTGTCTCT
GAAGTCCTATTTTATTACGGTTTTCGTCTGGCAGACTTAAGCTGTTAGAT
CTTTGTCGCTGGCCATTTTGAATGGTCGGTCCAGAAAGTTTTGAGATCAG
TTGAAAATTAATCAATCTACTCGTTGGTGAGTTGGGTGTTGTTGGTGATG
CGGCTGTATCCAAAGATGACATTGAACTAGTGCGTAAGCGTTGAGATTGA
ATATTTGTGTTTTGTAGATCAAGGTATCGGTTCTTCACTACCTCAGGTTT
GCTCTTCCATTCTCCAACATACGTCTTCAGCTCCGTGTTCGGTAAATTCG
AAGCCATGGTTTGCTTTTTCCAGATTCACATGAAATGGTAGAttcgattt
tttcaatttcgcagttttgtagtttttcttaaaatatataCCGAAGTCTA
GAAATTACGTTTCCTTCAATTTTCCTCAACTTTTTC Coding sequence (CDS) from alignment at scaffold_482:329293..330178 >TCONS_00068330 ID=TCONS_00068330|Name=TCONS_00068330|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_482:329293..330178 (Clytia hemisphaerica)
tCAGTCATAAAAATCTGCAGAGTTACCAGTAAAACTAATCGATCTTTTTC
GTCCTCTGAAAACATTACCACTTTTTGTTAAACCACTGGTTCCACCATCT
TCTGCATTCGACGGGTTGTGATTCCCTCCAGATATAGTATTTTGTCTCTG
AAGTCCTATTTTATTACGGTTTTCGTCTGGCAGACTTAAGCTGTTAGATC
TTTGTCGCTGGCCATTTTGAATGGTCGGTCCAGAAAGTTTTGAGATCAGT
TGAAAATTAATCAATCTACTCGTTGGTGAGTTGGGTGTTGTTGGTGATGC
GGCTGTATCCAAAGATGACATTGAACTAGTGCGTAAGCGTTGAGATTGAA
TATTTGTGTTTTGTAGATCAAGGTATCGGTTCTTCACTACCTCAGGTTTG
CTCTTCCATTCTCCAACATACGTCTTCAGCTCCGTGTTCGGTAAATTCGA
AGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068330-exon-scaffold_482-1491911889:329293..330178 | TCONS_00068330-exon-scaffold_482-1491911889:329293..330178 | Clytia hemisphaerica | exon |
| TCONS_00068330-exon-scaffold_482-1510915933:329293..330178 | TCONS_00068330-exon-scaffold_482-1510915933:329293..330178 | Clytia hemisphaerica | exon |
| TCONS_00068330-exon-scaffold_482-1575043694:329293..330178 | TCONS_00068330-exon-scaffold_482-1575043694:329293..330178 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:329293..330178 . |
Blast
The following BLAST results are available for this feature:
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