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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068331 ID=TCONS_00068331|Name=TCONS_00068331|organism=Clytia hemisphaerica|type=transcript|length=1820bp
GAAATAGATAGATGTATTCAATTTGAAATTAGTATCAGTGAGAAATGAAa
ttaattgattttttcaaatttagagaAATGATACAAATTAAAGCTAGTTA
CAATTCAATATTGCAGAGCATTATGGATTTGGGTGGATTTTGGTTTGACA
TTTGGTGTACAAGTCAAAGAAGTCAAGAACAAttaatccaaaaaatatca
tcagcTCGAAAGCTGACAGAATCGATGCTCCTGTCATCAAACCAACACAA
CCACCGAAATTCGCGAACAAATCTTGCCAAGTGTACGCTGGTTTTTCTTC
TATATGTTCAACAAGAAATGTATGGAAAGTGAAAGCTAGTTCGTAAAAAT
TTGGATAACTCGGAGCTTTGTGATAGTCCAACGACAATTTGATGTCTTCT
TCATAGCACGGCTGAAGTTTACAAAGACGGTTACACTCTTCAGTGACAGA
AAAATCACCTTCAACTTCCTTTAGACAGGTCTGCATCTCAGTATTATTGA
TAAAGGTTGTGTTGTCAAACCGGCGTGGTTCTCGCATGTGTTTCTTATAC
ATTTGCGGAATAGctccacatttttcaaaaactttctccCAAAAACAACC
TTTCTTGCATTTTGTCACCGTGTAGTTTCctttaaatttgttttgttcGT
AAGAACCCTTCCCTTCAACGCAGTCAGTAAAAGGCAATCCTAATCTGGTG
ATGATCTTCTTATCCAAAATCACGTGATACCAGCCTTCACTTGCCCAATA
AACAGTTGGTGACGCTTCTTGAAAAGTCTCTTCAGTTGGGTGAACATACA
GCTCAGTCCACAATTCGTCGAACGGCGTCCGATTAGCGACCGCTTGAACG
GATAAAATGTCGGACGGTACATATTGTGTGGAACCTCTAACAGTAAAACA
ATTTGTCGTATCGTCATAATCAACCAAATGATTCTGCAGACTTGAACTCG
AATAATCAGCTGTATAGTTCTGCACCTTGATCAAAGTAGTTCCGTTATAA
CCACACTGAGTTAAGTTTTGTCCACAAAGTCTCATGCTACCATCACTTAG
TAAGAGTGGACGTTTATAGGTTGGGATACCGTCAATAAAATGACGTCTCT
CTCTATTGATTGCGGCATAGTTGCAAATGGTTATCGAGGGaagtttgatt
tctttttccaCAGTAATTACAAAATTAGATACACTATGATCACTTAAGAA
AGATTCCCAATGCTCTTTAGATATCATGATAGCTGTTAACAAAGAACATG
CCACGAGGATGGACCAAATGACTTTACTCACGGCGCCACCTGTTGCTATG
CGATTGGCTCCATGTATGGTTAACCCTTCAGCGTAACTCTGTTTCTCACT
ACTGATCTTTTCTTCCATAATATTACAATTCTCTTCAAgaaatgattgtt
tttttgaCCGAGCTGTCAGTTGCTCTGGTGGTGCAAGTGATATTTTGCCA
GAAGAATCTTCACTATTGTCTCTGCTCTTAACTTGGATGATTCTTGGCTG
ACATACTTCTTCTTGTAGAGTAATATTGAAGTTTCTCTTGTTGGAAAATT
GATCATTTGTAAAACTTGTTTCAGAGCTTTCTCCCGACCGAATACTCTCT
TTGTCATCACGACCGTTGTTGGCTTGTTTCTCAAGTTTATCCAGTCGTTG
AAAAACTTCTTTTTGCTGGCTCAATAATTTCTGCGTTAGATTTATCATCT
GTTTTTCGACATTTTctgtcaatttttcaatttgtttgtcaaaattttta
gaatccaTTGCAAGATTTTCTGAGTTGACATATATCTAATcgttacattt
tttgaaaaagaattcctTTG Run BLAST on NCBI protein sequence of TCONS_00068331-protein >TCONS_00068331-protein ID=TCONS_00068331-protein|Name=TCONS_00068331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=545bp
MDSKNFDKQIEKLTENVEKQMINLTQKLLSQQKEVFQRLDKLEKQANNGR
DDKESIRSGESSETSFTNDQFSNKRNFNITLQEEVCQPRIIQVKSRDNSE
DSSGKISLAPPEQLTARSKKQSFLEENCNIMEEKISSEKQSYAEGLTIHG
ANRIATGGAVSKVIWSILVACSLLTAIMISKEHWESFLSDHSVSNFVITV
EKEIKLPSITICNYAAINRERRHFIDGIPTYKRPLLLSDGSMRLCGQNLT
QCGYNGTTLIKVQNYTADYSSSSLQNHLVDYDDTTNCFTVRGSTQYVPSD
ILSVQAVANRTPFDELWTELYVHPTEETFQEASPTVYWASEGWYHVILDK
KIITRLGLPFTDCVEGKGSYEQNKFKGNYTVTKCKKGCFWEKVFEKCGAI
PQMYKKHMREPRRFDNTTFINNTEMQTCLKEVEGDFSVTEECNRLCKLQP
CYEEDIKLSLDYHKAPSYPNFYELAFTFHTFLVEHIEEKPAYTWQDLFAN
FGGCVGLMTGASILSAFELMIFFGLIVLDFFDLYTKCQTKIHPNP Run BLAST on NCBI transcript from alignment at scaffold_482:334179..335998 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068331 ID=TCONS_00068331|Name=TCONS_00068331|organism=Clytia hemisphaerica|type=transcript|length=1820bp|location=Sequence derived from alignment at scaffold_482:334179..335998 (Clytia hemisphaerica)
CAAaggaattctttttcaaaaaatgtaacgATTAGATATATGTCAACTCA
GAAAATCTTGCAAtggattctaaaaattttgacaaacaaattgaaaaatt
gacagAAAATGTCGAAAAACAGATGATAAATCTAACGCAGAAATTATTGA
GCCAGCAAAAAGAAGTTTTTCAACGACTGGATAAACTTGAGAAACAAGCC
AACAACGGTCGTGATGACAAAGAGAGTATTCGGTCGGGAGAAAGCTCTGA
AACAAGTTTTACAAATGATCAATTTTCCAACAAGAGAAACTTCAATATTA
CTCTACAAGAAGAAGTATGTCAGCCAAGAATCATCCAAGTTAAGAGCAGA
GACAATAGTGAAGATTCTTCTGGCAAAATATCACTTGCACCACCAGAGCA
ACTGACAGCTCGGtcaaaaaaacaatcatttcTTGAAGAGAATTGTAATA
TTATGGAAGAAAAGATCAGTAGTGAGAAACAGAGTTACGCTGAAGGGTTA
ACCATACATGGAGCCAATCGCATAGCAACAGGTGGCGCCGTGAGTAAAGT
CATTTGGTCCATCCTCGTGGCATGTTCTTTGTTAACAGCTATCATGATAT
CTAAAGAGCATTGGGAATCTTTCTTAAGTGATCATAGTGTATCTAATTTT
GTAATTACTGtggaaaaagaaatcaaacttCCCTCGATAACCATTTGCAA
CTATGCCGCAATCAATAGAGAGAGACGTCATTTTATTGACGGTATCCCAA
CCTATAAACGTCCACTCTTACTAAGTGATGGTAGCATGAGACTTTGTGGA
CAAAACTTAACTCAGTGTGGTTATAACGGAACTACTTTGATCAAGGTGCA
GAACTATACAGCTGATTATTCGAGTTCAAGTCTGCAGAATCATTTGGTTG
ATTATGACGATACGACAAATTGTTTTACTGTTAGAGGTTCCACACAATAT
GTACCGTCCGACATTTTATCCGTTCAAGCGGTCGCTAATCGGACGCCGTT
CGACGAATTGTGGACTGAGCTGTATGTTCACCCAACTGAAGAGACTTTTC
AAGAAGCGTCACCAACTGTTTATTGGGCAAGTGAAGGCTGGTATCACGTG
ATTTTGGATAAGAAGATCATCACCAGATTAGGATTGCCTTTTACTGACTG
CGTTGAAGGGAAGGGTTCTTACgaacaaaacaaatttaaagGAAACTACA
CGGTGACAAAATGCAAGAAAGGTTGTTTTTGggagaaagtttttgaaaaa
tgtggagCTATTCCGCAAATGTATAAGAAACACATGCGAGAACCACGCCG
GTTTGACAACACAACCTTTATCAATAATACTGAGATGCAGACCTGTCTAA
AGGAAGTTGAAGGTGATTTTTCTGTCACTGAAGAGTGTAACCGTCTTTGT
AAACTTCAGCCGTGCTATGAAGAAGACATCAAATTGTCGTTGGACTATCA
CAAAGCTCCGAGTTATCCAAATTTTTACGAACTAGCTTTCACTTTCCATA
CATTTCTTGTTGAACATATAGAAGAAAAACCAGCGTACACTTGGCAAGAT
TTGTTCGCGAATTTCGGTGGTTGTGTTGGTTTGATGACAGGAGCATCGAT
TCTGTCAGCTTTCGAgctgatgatattttttggattaaTTGTTCTTGACT
TCTTTGACTTGTACACCAAATGTCAAACCAAAATCCACCCAAATCCATAA
TGCTCTGCAATATTGAATTGTAACTAGCTTTAATTTGTATCATTtctcta
aatttgaaaaaatcaattaatTTCATTTCTCACTGATACTAATTTCAAAT
TGAATACATCTATCTATTTC Coding sequence (CDS) from alignment at scaffold_482:334179..335998 >TCONS_00068331 ID=TCONS_00068331|Name=TCONS_00068331|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at scaffold_482:334179..335998 (Clytia hemisphaerica)
AtggattctaaaaattttgacaaacaaattgaaaaattgacagAAAATGT
CGAAAAACAGATGATAAATCTAACGCAGAAATTATTGAGCCAGCAAAAAG
AAGTTTTTCAACGACTGGATAAACTTGAGAAACAAGCCAACAACGGTCGT
GATGACAAAGAGAGTATTCGGTCGGGAGAAAGCTCTGAAACAAGTTTTAC
AAATGATCAATTTTCCAACAAGAGAAACTTCAATATTACTCTACAAGAAG
AAGTATGTCAGCCAAGAATCATCCAAGTTAAGAGCAGAGACAATAGTGAA
GATTCTTCTGGCAAAATATCACTTGCACCACCAGAGCAACTGACAGCTCG
GtcaaaaaaacaatcatttcTTGAAGAGAATTGTAATATTATGGAAGAAA
AGATCAGTAGTGAGAAACAGAGTTACGCTGAAGGGTTAACCATACATGGA
GCCAATCGCATAGCAACAGGTGGCGCCGTGAGTAAAGTCATTTGGTCCAT
CCTCGTGGCATGTTCTTTGTTAACAGCTATCATGATATCTAAAGAGCATT
GGGAATCTTTCTTAAGTGATCATAGTGTATCTAATTTTGTAATTACTGtg
gaaaaagaaatcaaacttCCCTCGATAACCATTTGCAACTATGCCGCAAT
CAATAGAGAGAGACGTCATTTTATTGACGGTATCCCAACCTATAAACGTC
CACTCTTACTAAGTGATGGTAGCATGAGACTTTGTGGACAAAACTTAACT
CAGTGTGGTTATAACGGAACTACTTTGATCAAGGTGCAGAACTATACAGC
TGATTATTCGAGTTCAAGTCTGCAGAATCATTTGGTTGATTATGACGATA
CGACAAATTGTTTTACTGTTAGAGGTTCCACACAATATGTACCGTCCGAC
ATTTTATCCGTTCAAGCGGTCGCTAATCGGACGCCGTTCGACGAATTGTG
GACTGAGCTGTATGTTCACCCAACTGAAGAGACTTTTCAAGAAGCGTCAC
CAACTGTTTATTGGGCAAGTGAAGGCTGGTATCACGTGATTTTGGATAAG
AAGATCATCACCAGATTAGGATTGCCTTTTACTGACTGCGTTGAAGGGAA
GGGTTCTTACgaacaaaacaaatttaaagGAAACTACACGGTGACAAAAT
GCAAGAAAGGTTGTTTTTGggagaaagtttttgaaaaatgtggagCTATT
CCGCAAATGTATAAGAAACACATGCGAGAACCACGCCGGTTTGACAACAC
AACCTTTATCAATAATACTGAGATGCAGACCTGTCTAAAGGAAGTTGAAG
GTGATTTTTCTGTCACTGAAGAGTGTAACCGTCTTTGTAAACTTCAGCCG
TGCTATGAAGAAGACATCAAATTGTCGTTGGACTATCACAAAGCTCCGAG
TTATCCAAATTTTTACGAACTAGCTTTCACTTTCCATACATTTCTTGTTG
AACATATAGAAGAAAAACCAGCGTACACTTGGCAAGATTTGTTCGCGAAT
TTCGGTGGTTGTGTTGGTTTGATGACAGGAGCATCGATTCTGTCAGCTTT
CGAgctgatgatattttttggattaaTTGTTCTTGACTTCTTTGACTTGT
ACACCAAATGTCAAACCAAAATCCACCCAAATCCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068331-exon-scaffold_482-1491911889:334179..335998 | TCONS_00068331-exon-scaffold_482-1491911889:334179..335998 | Clytia hemisphaerica | exon |
| TCONS_00068331-exon-scaffold_482-1510915933:334179..335998 | TCONS_00068331-exon-scaffold_482-1510915933:334179..335998 | Clytia hemisphaerica | exon |
| TCONS_00068331-exon-scaffold_482-1575043694:334179..335998 | TCONS_00068331-exon-scaffold_482-1575043694:334179..335998 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:334179..335998 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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