TCONS_00068333 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068333
Unique NameTCONS_00068333
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068333 ID=TCONS_00068333|Name=TCONS_00068333|organism=Clytia hemisphaerica|type=transcript|length=829bp
gttctaatgattataatatttctttataagatgctttgttgtctttttaa
tctttgtgtaaacttgcatatgttttgcatattttccaactaaatccaac
cacggctttttcgttccttatttttgcatacaattcaagatggcggatgg
aaaggcgaaaaggtctattatcattatccctttatatTCATTcatagaac
ttttgcaaaaaaaaNTCTTCTTTGAAAATGGATGGACAGACAGGAGCAGC
AATTACAGCAAGAAACAAGAAAGCTCTTAAGACTTTAAAAATGTTGCTCA
TTCTTTATACGATTTGCGTTGTACCAGGAAGTTTTTACGGATTACTGTAT
CCTATATTGGGTCATTTCATACCAACGTTTTATGAATTCTCTTGGACTGA
AGCTGGATATATCGCGTATTTTTGCCATCAATATGGAATCTGCATCAATA
ACATGGCGAATGTCTTCATTTATGTTGGAAGGATTTCAGAGTTTCGAAAA
TTCTTGGCAAAACCTTTACAGATGTGTTGTCGAACCAATCATCCGACATT
CGTAGAACCGAAGCCCAAACGTCAACAAGTTGCAATAACATCtttttaac
agttttgtttTCTCATGACAATAAAATAGGTTTGCCTATTCTTTACTTCG
ATGGCCctgaaagttcaaaatttttcttaaaaaaatcaagcCAGGGTTTC
CAAAAACGAAGCCTGATTTTCTCTGAATTAAAACGGGAGTCAAGAAAAAG
tcgattttccaaaatttgagaCCACCAAATTATTTTCTTGAGTTAAttaa
taacttgaaaaatttttaatccTTTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00068333-protein

>TCONS_00068333-protein ID=TCONS_00068333-protein|Name=TCONS_00068333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MDGQTGAAITARNKKALKTLKMLLILYTICVVPGSFYGLLYPILGHFIPT
FYEFSWTEAGYIAYFCHQYGICINNMANVFIYVGRISEFRKFLAKPLQMC
CRTNHPTFVEPKPKRQQVAITSF
Run BLAST on NCBI

transcript from alignment at scaffold_482:341486..342314

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068333 ID=TCONS_00068333|Name=TCONS_00068333|organism=Clytia hemisphaerica|type=transcript|length=829bp|location=Sequence derived from alignment at scaffold_482:341486..342314 (Clytia hemisphaerica)
GAAAAAAggattaaaaatttttcaagttattaaTTAACTCAAGAAAATAA
TTTGGTGGtctcaaattttggaaaatcgaCTTTTTCTTGACTCCCGTTTT
AATTCAGAGAAAATCAGGCTTCGTTTTTGGAAACCCTGgcttgatttttt
taagaaaaattttgaactttcagGGCCATCGAAGTAAAGAATAGGCAAAC
CTATTTTATTGTCATGAGAaaacaaaactgttaaaaaGATGTTATTGCAA
CTTGTTGACGTTTGGGCTTCGGTTCTACGAATGTCGGATGATTGGTTCGA
CAACACATCTGTAAAGGTTTTGCCAAGAATTTTCGAAACTCTGAAATCCT
TCCAACATAAATGAAGACATTCGCCATGTTATTGATGCAGATTCCATATT
GATGGCAAAAATACGCGATATATCCAGCTTCAGTCCAAGAGAATTCATAA
AACGTTGGTATGAAATGACCCAATATAGGATACAGTAATCCGTAAAAACT
TCCTGGTACAACGCAAATCGTATAAAGAATGAGCAACATTTTTAAAGTCT
TAAGAGCTTTCTTGTTTCTTGCTGTAATTGCTGCTCCTGTCTGTCCATCC
ATTTTCAAAGAAGANttttttttgcaaaagttctatgAATGAatataaag
ggataatgataatagaccttttcgcctttccatccgccatcttgaattgt
atgcaaaaataaggaacgaaaaagccgtggttggatttagttggaaaata
tgcaaaacatatgcaagtttacacaaagattaaaaagacaacaaagcatc
ttataaagaaatattataatcattagaac

Coding sequence (CDS) from alignment at scaffold_482:341486..342314

>TCONS_00068333 ID=TCONS_00068333|Name=TCONS_00068333|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at scaffold_482:341486..342314 (Clytia hemisphaerica)
ttaaaaaGATGTTATTGCAACTTGTTGACGTTTGGGCTTCGGTTCTACGA
ATGTCGGATGATTGGTTCGACAACACATCTGTAAAGGTTTTGCCAAGAAT
TTTCGAAACTCTGAAATCCTTCCAACATAAATGAAGACATTCGCCATGTT
ATTGATGCAGATTCCATATTGATGGCAAAAATACGCGATATATCCAGCTT
CAGTCCAAGAGAATTCATAAAACGTTGGTATGAAATGACCCAATATAGGA
TACAGTAATCCGTAAAAACTTCCTGGTACAACGCAAATCGTATAAAGAAT
GAGCAACATTTTTAAAGTCTTAAGAGCTTTCTTGTTTCTTGCTGTAATTG
CTGCTCCTGTCTGTCCATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042648XLOC_042648Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068333-proteinTCONS_00068333-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068333-exon-scaffold_482-1491911889:341486..342314TCONS_00068333-exon-scaffold_482-1491911889:341486..342314Clytia hemisphaericaexon
TCONS_00068333-exon-scaffold_482-1510915933:341486..342314TCONS_00068333-exon-scaffold_482-1510915933:341486..342314Clytia hemisphaericaexon
TCONS_00068333-exon-scaffold_482-1575043694:341486..342314TCONS_00068333-exon-scaffold_482-1575043694:341486..342314Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:341486..342314 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.4067	3.32179	6.71234	6.59088	3.92361	3.58932	3.03932	3.20628	2.68274	2.72083	4.03722	3.59897	5.9501	3.89892	2.80172	3.29032	2.60641	3.19945	5.29169	5.42952	1.8797	2.90291	2.65543	2.62549	1.75736	4.08143	3.0636	3.6849	3.51105	3.72569
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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