TCONS_00068342 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068342
Unique NameTCONS_00068342
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length858

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068342 ID=TCONS_00068342|Name=TCONS_00068342|organism=Clytia hemisphaerica|type=transcript|length=858bp
CCAACATCTGTCAAATTACGTTCCGCACCAGTCATTTGCAGGTCTACAAA
AATATGCGTGAACAATGTTTTCTCCTCGACATTTTTAACTTCATATCTCA
AAGTTGTCAATCCATTTTCATGCGaatccaaaaaacctttttctgttttc
ttcaacattaaaatagctttaccaTTCCTAGCTTGTTTCTTATGTGTCAA
CATCGAATACCGCCCTTCGGTCATGGGCGGTCTATTAATTTTAACGCCAC
TATGACGTAACCGCCAATGCAGATCATCATCCTCAGAGCCCCATCCCCAA
TACTTATTTGAATATCCGTTGACTTTTTTAAAATCGGCTTCCGTAAGTCC
GACAACTCCACCAAAAGAGTACGGCGAAAAAGACCGGTAACCCCATACAT
CGATAGCTGGGCACATATACCGTGGACTGTCTTTACAACAATAATTATTC
AACTCATTTTCTAGTAATAAATCAACATCGTGGAACACAAAACAAGAGAA
TTGGTTGCGTGAGAATCGTGTTATCGCTTCGTGAAAACCAACGTTGAAGA
GTTTGGCACGGTTGAACGGGTGTGTATCGTTTTGTTCGATGATAAAAATA
CGGTAACCGATTTGTGAGCGGTGTAGTATGGGATGCATGTGACGTAAAAA
GATCTTGAGTTGATTTTCGCGCGCTTTGTAAGGAATAATGATGGCGGTCG
TACAGTTGGGTTTACACGTGGATGGTTTGTAGGATCCACCTCTTTGTAAG
TTCTGTTTGAGATCTGATGACAGGTTCTCGTAAATTTGTTGGTAGGATGA
TGGAACTGTTCGATTTATTGCGATTCGACCATCTGGAAAATGAAATTATA
ACAAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_483:187998..189771+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068342 ID=TCONS_00068342|Name=TCONS_00068342|organism=Clytia hemisphaerica|type=transcript|length=1774bp|location=Sequence derived from alignment at scaffold_483:187998..189771+ (Clytia hemisphaerica)
CCAACATCTGTCAAATTACGTTCCGCACCAGTCATTTGCAGGTCTACAAA
AATATGCGTGAACAATGTTTTCTCCTCGACATTTTTAACTTCATATCTCA
AAGTTGTCAATCCATTTTCATGCGAATCCAAAACNGAGACTCCCGGATGG
Gaaataaagccacttatttcccatccagaacgcccgtgcgtggttacaca
aacgccggattgaaagtaaagtctatcgctagatttcaataaatgcagta
atcaaaaacaaaagaaacactagatgcaatccgtcgtcatgattgcggcg
cgttctaggcgcgttctggatgagaaataagtggcttcactttttcttgc
ttgagaaaggttagagattttactctagcccttcgggctttaaactcaat
acCTAAACTTTGCCTTAAGGTAAGAATAGCATAAGAAGAATTTGGAGCTT
GAGAGGTGCAAAATTAATAGGACAAGCCGAGCCTTCGTGGACAAAATTAC
GAGTACGAGAattacccttacagtgcagagaaaattttgctAAATCTTGC
AAAAACTCGATTCTTGGAGTGCATATTTTTATTCAGGTTAATTCAGGGCA
AAAATAGTTGTATTCTCCaagattttggcaaaaattcgttttttttctcC
GTAATTTAGGAGAACTAAAAAGTTACCCAGAAAGGAAAACACCCACAGTA
GGTCACTTAGCTCGAGTCCCCCCCAGGAGAGTCTAACGAGAGCCATTGAT
TTAGCTATTGAAGATTTACAAGGAGAGGATAGTTAATTCCTTTTCTAGCA
AAGACACGCATCTGAGGTTAAAGTTCACAGAATTTTTTTCGCTAAGTCAA
ATGCTTTGATAATAACAAAAAACATTccttaaaaatttgttttcaagtca
gccCTTTCAAGTCGGACCGACATCTGTCAAATTACGTTCCGCAACAGTCA
TTTGCAGGTTTACAAAAATATGCGTGAACAAAGTTTTCTCCTCAACATTT
TTAACTTCATATCTCAAAGTTGTCAATCCATTTTCATGCGaatccaaaaa
acctttttctgttttcttcaacattaaaatagctttaccaTTCCTAGCTT
GTTTCTTATGTGTCAACATCGAATACCGCCCTTCGGTCATGGGCGGTCTA
TTAATTTTAACGCCACTATGACGTAACCGCCAATGCAGATCATCATCCTC
AGAGCCCCATCCCCAATACTTATTTGAATATCCGTTGACTTTTTTAAAAT
CGGCTTCCGTAAGTCCGACAACTCCACCAAAAGAGTACGGCGAAAAAGAC
CGGTAACCCCATACATCGATAGCTGGGCACATATACCGTGGACTGTCTTT
ACAACAATAATTATTCAACTCATTTTCTAGTAATAAATCAACATCGTGGA
ACACAAAACAAGAGAATTGGTTGCGTGAGAATCGTGTTATCGCTTCGTGA
AAACCAACGTTGAAGAGTTTGGCACGGTTGAACGGGTGTGTATCGTTTTG
TTCGATGATAAAAATACGGTAACCGATTTGTGAGCGGTGTAGTATGGGAT
GCATGTGACGTAAAAAGATCTTGAGTTGATTTTCGCGCGCTTTGTAAGGA
ATAATGATGGCGGTCGTACAGTTGGGTTTACACGTGGATGGTTTGTAGGA
TCCACCTCTTTGTAAGTTCTGTTTGAGATCTGATGACAGGTTCTCGTAAA
TTTGTTGGTAGGATGATGGAACTGTTCGATTTATTGCGATTCGACCATCT
GGAAAATGAAATTATAACAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042656XLOC_042656Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068342-exon-scaffold_483-1491911889:187998..188077TCONS_00068342-exon-scaffold_483-1491911889:187998..188077Clytia hemisphaericaexon
TCONS_00068342-exon-scaffold_483-1510915933:187998..188077TCONS_00068342-exon-scaffold_483-1510915933:187998..188077Clytia hemisphaericaexon
TCONS_00068342-exon-scaffold_483-1575043694:187998..188077TCONS_00068342-exon-scaffold_483-1575043694:187998..188077Clytia hemisphaericaexon
TCONS_00068342-exon-scaffold_483-1491911889:188994..189771TCONS_00068342-exon-scaffold_483-1491911889:188994..189771Clytia hemisphaericaexon
TCONS_00068342-exon-scaffold_483-1510915933:188994..189771TCONS_00068342-exon-scaffold_483-1510915933:188994..189771Clytia hemisphaericaexon
TCONS_00068342-exon-scaffold_483-1575043694:188994..189771TCONS_00068342-exon-scaffold_483-1575043694:188994..189771Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:187998..189771 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.106614	0.0618948	0.128684	4.70184	6.18579	43.9377	50.2548	39.6218	28.3967	50.1983	27.6053	1.70834	1.73731	0.0310407	0	0.676728	0.531533	4.07792	3.30695	1.42704	0.987458	0.532426	0.707667	1.96914	1.77303	0.224871	0.079996	0.182022	0.0618174
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003859Galactosyl_T
IPR029044Nucleotide-diphossugar_trans
IPR027995Galactosyl_T_N
IPR027791Galactosyl_T_C
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016757transferase activity, transferring glycosyl groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
Blast
[Close]
BLAST of TCONS_00068342 vs. Swiss-Prot (Human)
Match: B4GT2 (Beta-1,4-galactosyltransferase 2 OS=Homo sapiens GN=B4GALT2 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 6.123e-60
Identity = 104/266 (39.10%), Postives = 158/266 (59.40%), Query Frame = -2 
Query:   39 GRIAINRTVPSSYQQIYENLSSDLKQNLQRGGSYKPSTCKPNCTTAIIIPYKARENQLKIFLRHMHPILHRSQIGYRIFIIEQNDTHPFNRAKLFNVGFHEAITRFSRNQFSCFVFHDVDXXXXXXXXNYCCKDSPRYMCPAIDVWGYRSFSPYS--FGGVVGLTEADFKKVNGYSNKYWGWGSEDDDLHWRLRHSGVKINRPPMTEGRYSMLTHKKQARNGKAILMLKKTEKGFLDSHENGLTTLRYEVKNVEEKTLFTHIFVDL 830
            GR+ I  T P   +++           +  GG Y P  C P  T A+IIP++ RE+ L+ +L ++HPIL R ++ Y +++I Q+    FNRAKL NVGF EA+   +   + CF+F DVDL+  ++ N Y C D PR+   A+D +G+R   PY+  FGGV GL++A F ++NG+ N+YWGWG EDDD+  R+  +G+KI+RP +  GRY M+ H +   N        K +   L    +G+ ++RY+V  V  + LFT+I VD+
Sbjct:  106 GRLLIEFTSPMPLERVQRE-----NPGVLMGGRYTPPDCTPAQTVAVIIPFRHREHHLRYWLHYLHPILRRQRLRYGVYVINQHGEDTFNRAKLLNVGFLEALKEDA--AYDCFIFSDVDLVPMDDRNLYRCGDQPRHFAIAMDKFGFRL--PYAGYFGGVSGLSKAQFLRINGFPNEYWGWGGEDDDIFNRISLTGMKISRPDIRIGRYRMIKHDRDKHNEPNPQRFTKIQNTKLTMKRDGIGSVRYQVLEVSRQPLFTNITVDI 362
The following BLAST results are available for this feature:
BLAST of TCONS_00068342 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GT26.123e-6039.10Beta-1,4-galactosyltransferase 2 OS=Homo sapiens G... [more]
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