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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068347 ID=TCONS_00068347|Name=TCONS_00068347|organism=Clytia hemisphaerica|type=transcript|length=1747bp
gccagcagccaaaagcAACCGCGTataatgggtggtttaaaattatgacc
tttgaacactgtgacccacccccaaaatggcgcatgtaatgataaactaG
ATTCGGCTAatgcttcagatgcatccggccACGCGGGACGCGCGTAGCAT
AGGGTTAGGGATTTGCACCAGGTGGCGCAGCCACCCTGGTGCACATCCCT
AATGTTATGTTTATATCCACAGCTAcggctaccatctttgtttagCATTT
GAGATTTCGTGCGTATTTACACGAATCATATTTACTTCTAGCAAGACTAC
CATGAAGCCAAGATGGCGTCTAGCTGACTCAATTTACTTCTCAACCTACC
TGGTTTAAATCCACTTACTCTGTTACAATCCGTCCACAAAGAGACACAAC
AACTGGCGACGAAGATAGTCAACAGATCATAGAACactatttcaacaata
tttgaGTGAATCAAGACTCAAATGGCAGCACAACTCCAGATTTCTATGGT
CCAAAACTTCGACCCACGAGGAGATCCACAAACACTCAGCCAAAGATGGG
AAAGATGGCAGAAatcatttacatattttatCACTNCCCACGAGGAGATC
CACAAACACTCAGCCAAAGATGGGAAAGATGGCAGAAATCGTTTACATAC
TTTATCACCGCATCTGGTATAGGAAACGATGCCAGAAAGAAGGCCCTCTT
ACTACATACAATGGGCACTGAAACACAAGAACTTTTTGAAACTCTACCAG
ATACTGGACAAACATACGATGAAGCAGTCGAAGCACTTACGACATACTTC
ATACCGCAGAAAAACGTTACATTCGAGAGATCAGTTTTCAACAATGCAAA
CCAACAAACCCATGAGACAACTGAACAGTACGTATCAAGACTTTGCAAAC
TTGCTCAAAATTGCGATTATGGAAATTCTTTAAATGACCACATCCGAGAC
AGAGTAGTATCTGGCTGCAAGGGCAGCAAGTACAGAGAAAAATTGCTTGC
CGAAAAAAACTTAACCCTTGAAAAAGTTATCGAAATCGGTCAATCCATGG
AAGCAGCCAAATCCCAGTCGAAAAGGATTGAACAATCAAACAACAAAGAT
CCACCTGACCACGTCAACACTTTAGACCAGCAGAACAACCGAAATTTCCG
TGGAAGAGGAAGATGGAACATCAGTTTCCCAAGAGGAGGAAGTGGACCTA
GAAATCGATCACAGGCACCACACCCATCAACCAGAGGAACCAACAGCCAT
CGTATCATGTGCGGAAGGTGTAGAGCAATGGGCCACAAAGGTGAGGAATG
TCGTAGATCCAAAAATTCGAAATGCAACAAATGCGGCAAAACTGGACACT
TTCAACGCATGTGTCTGTCCAACCGTCAACAACCGATCAATAGACGAGAC
ATAAATCAACTAGAGGAACAACCACCAGAAGATAACCGACGAGGATCTTG
AAAACAGGCTCATCATCATAGATGAAACTACATATAATTCGCTCGATTCA
AAACTGCAACTCACCAATTCATCTTCGCGTACCTTCCCGTACCAGTCAAC
ACACCAAATTCCAACGCTAGGAACCTTCTCAACCGTTATCAGAGCAGACG
GACAAGATCAGCATGCAGAGTTCATCGTAGTTCAAGGTAACTCTGGCTCA
ATCCTTGGCAGATCAACCGCCATTAGTTTAGACATCCTTCGAATTGGCAG
ACCATCAGAACCAGAGCTCGTAAGATCATTATCAAGCAAAGAATACA Run BLAST on NCBI protein sequence of TCONS_00068347-protein >TCONS_00068347-protein ID=TCONS_00068347-protein|Name=TCONS_00068347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MGKMAEIIYIFYHXPRGDPQTLSQRWERWQKSFTYFITASGIGNDARKKA
LLLHTMGTETQELFETLPDTGQTYDEAVEALTTYFIPQKNVTFERSVFNN
ANQQTHETTEQYVSRLCKLAQNCDYGNSLNDHIRDRVVSGCKGSKYREKL
LAEKNLTLEKVIEIGQSMEAAKSQSKRIEQSNNKDPPDHVNTLDQQNNRN
FRGRGRWNISFPRGGSGPRNRSQAPHPSTRGTNSHRIMCGRCRAMGHKGE
ECRRSKNSKCNKCGKTGHFQRMCLSNRQQPINRRDINQLEEQPPEDNRRG
S Run BLAST on NCBI transcript from alignment at scaffold_483:332617..334461+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068347 ID=TCONS_00068347|Name=TCONS_00068347|organism=Clytia hemisphaerica|type=transcript|length=1845bp|location=Sequence derived from alignment at scaffold_483:332617..334461+ (Clytia hemisphaerica)
gccagcagccaaaagcAACCGCGTataatgggtggtttaaaattatgacc
tttgaacactgtgacccacccccaaaatggcgcatgtaatgataaactaG
ATTCGGCTAatgcttcagatgcatccggccACGCGGGACGCGCGTAGCAT
AGGGTTAGGGATTTGCACCAGGTGGCGCAGCCACCCTGGTGCACATCCCT
AATGTTATGTTTATATCCACAGCTAcggctaccatctttgtttagCATTT
GAGATTTCGTGCGTATTTACACGAATCATATTTACTTCTAGCAAGACTAC
CATGAAGCCAAGATGGCGTCTAGCTGACTCAATTTACTTCTCAACCTACC
TGGTTTAAATCCACTTACTCTGTTACAATCCGTCCACAAAGAGACACAAC
AACTGGCGACGAAGATAGTCAACAGATCATAGAACactatttcaacaata
tttgaGTGAATCAAGACTCAAATGGCAGCACAACTCCAGATTTCTATGGT
CCAAAACTTCGACCCACGAGGAGATCCACAAACACTCAGCCAAAGATGGG
AAAGATGGCAGAAatcatttacatattttatCACTNCCCACGAGGAGATC
CACAAACACTCAGCCAAAGATGGGAAAGATGGCAGAAATCGTTTACATAC
TTTATCACCGCATCTGGTATAGGAAACGATGCCAGAAAGAAGGCCCTCTT
ACTACATACAATGGGCACTGAAACACAAGAACTTTTTGAAACTCTACCAG
ATACTGGACAAACATACGATGAAGCAGTCGAAGCACTTACGACATACTTC
ATACCGCAGAAAAACGTTACATTCGAGAGATCAGTTTTCAACAATGCAAA
CCAACAAACCCATGAGACAACTGAACAGTACGTATCAAGACTTTGCAAAC
TTGCTCAAAATTGCGATTATGGAAATTCTTTAAATGACCACATCCGAGAC
AGAGTAGTATCTGGCTGCAAGGGCAGCAAGTACAGAGAAAAATTGCTTGC
CGAAAAAAACTTAACCCTTGAAAAAGTTATCGAAATCGGTCAATCCATGG
AAGCAGCCAAATCCCAGTCGAAAAGGATTGAACAATCAAACAACAAAGAT
CCACCTGACCACGTCAACACTTTAGACCAGCAGAACAACCGAAATTTCCG
TGGAAGAGGAAGATGGAACATCAGTTTCCCAAGAGGAGGAAGTGGACCTA
GAAATCGATCACAGGCACCACACCCATCAACCAGAGGAACCAACAGCCAT
CGTATCATGTGCGGAAGGTGTAGAGCAATGGGCCACAAAGGTGAGGAATG
TCGTAGATCCAAAAATTCGAAATGCAACAAATGCGGCAAAACTGGACACT
TTCAACGCATGTGTCTGTCCAACCGTCAACAACCGATCAATAGACGAGAC
ATAAATCAACTAGAGGAACAACCACCAGAAGATAACCGACGAGGATCTTG
AAAACAGGTTTGaagataaaattattttaaaaatcggCGGACATGAACTA
CCACTGTACTCCATAGACATTCTGAACACCAAAGTATCTGTACTTATCAA
CTCAGGCTCATCATCATAGATGAAACTACATATAATTCGCTCGATTCAAA
ACTGCAACTCACCAATTCATCTTCGCGTACCTTCCCGTACCAGTCAACAC
ACCAAATTCCAACGCTAGGAACCTTCTCAACCGTTATCAGAGCAGACGGA
CAAGATCAGCATGCAGAGTTCATCGTAGTTCAAGGTAACTCTGGCTCAAT
CCTTGGCAGATCAACCGCCATTAGTTTAGACATCCTTCGAATTGGCAGAC
CATCAGAACCAGAGCTCGTAAGATCATTATCAAGCAAAGAATACA Coding sequence (CDS) from alignment at scaffold_483:332617..334461+ >TCONS_00068347 ID=TCONS_00068347|Name=TCONS_00068347|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_483:332617..334461+ (Clytia hemisphaerica)
ATGGGAAAGATGGCAGAAatcatttacatattttatCACTNCCCACGAGG
AGATCCACAAACACTCAGCCAAAGATGGGAAAGATGGCAGAAATCGTTTA
CATACTTTATCACCGCATCTGGTATAGGAAACGATGCCAGAAAGAAGGCC
CTCTTACTACATACAATGGGCACTGAAACACAAGAACTTTTTGAAACTCT
ACCAGATACTGGACAAACATACGATGAAGCAGTCGAAGCACTTACGACAT
ACTTCATACCGCAGAAAAACGTTACATTCGAGAGATCAGTTTTCAACAAT
GCAAACCAACAAACCCATGAGACAACTGAACAGTACGTATCAAGACTTTG
CAAACTTGCTCAAAATTGCGATTATGGAAATTCTTTAAATGACCACATCC
GAGACAGAGTAGTATCTGGCTGCAAGGGCAGCAAGTACAGAGAAAAATTG
CTTGCCGAAAAAAACTTAACCCTTGAAAAAGTTATCGAAATCGGTCAATC
CATGGAAGCAGCCAAATCCCAGTCGAAAAGGATTGAACAATCAAACAACA
AAGATCCACCTGACCACGTCAACACTTTAGACCAGCAGAACAACCGAAAT
TTCCGTGGAAGAGGAAGATGGAACATCAGTTTCCCAAGAGGAGGAAGTGG
ACCTAGAAATCGATCACAGGCACCACACCCATCAACCAGAGGAACCAACA
GCCATCGTATCATGTGCGGAAGGTGTAGAGCAATGGGCCACAAAGGTGAG
GAATGTCGTAGATCCAAAAATTCGAAATGCAACAAATGCGGCAAAACTGG
ACACTTTCAACGCATGTGTCTGTCCAACCGTCAACAACCGATCAATAGAC
GAGACATAAATCAACTAGAGGAACAACCACCAGAAGATAACCGACGAGGA
TCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068347-exon-scaffold_483-1491911889:332617..334073 | TCONS_00068347-exon-scaffold_483-1491911889:332617..334073 | Clytia hemisphaerica | exon |
| TCONS_00068347-exon-scaffold_483-1510915933:332617..334073 | TCONS_00068347-exon-scaffold_483-1510915933:332617..334073 | Clytia hemisphaerica | exon |
| TCONS_00068347-exon-scaffold_483-1575043694:332617..334073 | TCONS_00068347-exon-scaffold_483-1575043694:332617..334073 | Clytia hemisphaerica | exon |
| TCONS_00068347-exon-scaffold_483-1491911889:334172..334461 | TCONS_00068347-exon-scaffold_483-1491911889:334172..334461 | Clytia hemisphaerica | exon |
| TCONS_00068347-exon-scaffold_483-1510915933:334172..334461 | TCONS_00068347-exon-scaffold_483-1510915933:334172..334461 | Clytia hemisphaerica | exon |
| TCONS_00068347-exon-scaffold_483-1575043694:334172..334461 | TCONS_00068347-exon-scaffold_483-1575043694:334172..334461 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_483 | supercontig | scaffold_483:332617..334461 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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