TCONS_00068380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068380
Unique NameTCONS_00068380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length859

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068380 ID=TCONS_00068380|Name=TCONS_00068380|organism=Clytia hemisphaerica|type=transcript|length=859bp
aaagAAGGAGGTTTTTATTCGAAATAATTTGAAGTAGTTGGAGGTAGGCT
GATTCAGCTTGGTTTATTACTAGATAGTGTACAATGTTTAAGAGTTCTTA
GGCTAATTGGTTTTATAGGTTAAATGTATAAATGGTcagatgttttgaaa
cccacaAATGACTTCTCTTACTAAACGCTTTGGTCCTTATCGTTATTTAC
CAGCTTTTTTTGTTCTTGGNTTATGGTTTTATATATAGGTTAAATATATA
AATGGTCAGATGTTTTGAAACCAACAAATGACTTCTCTTACTAAACGCTT
TGGTCCTTATCGTTATTTACCAGCTTTTTTTGTTCTTGGTGGATTACTTG
AACTGTTTATGATTAAAGTCCGAATAGGAAAGGAAACATTTTACGATACT
GCTTTGAGGAAAGCTGCAGAAAGAAAAATTGCAGAAGCAGACCAGACTGA
TagtgaaaattgaaagaaaatatattaaTTATAGTCAAGTTAGCTAAAGA
AACAGACACAAATGCCAGCTGGAGTATCTTGGTCAAGATATTTGAAATTC
ACTGCTGCCTCCTTTGCATCTATGTTTGCAGGAAGTTCAGTTGTACATTG
GATTTACAAGCCTGATTTAACCATTCCAGAAATACCAAGAGATCTTTCCA
AGGTGAAATCAGAATCCTCTTTTATCTCATTCAAATCTGCCAGTGAAGTC
CAAGGAAAGCAAAGTGAATCCTAAATGTGTTATGTAcaatttgtaaatag
tttttttatgagaattatTAGAAATTTTAGAATGGAGAAAATATAATGAT
GATGAGTNGTATAAGAATTATTAGAAATTTTACAATGGAGAAAATATAAT
GATGATGAG
Run BLAST on NCBI

transcript from alignment at scaffold_483:259481..263594-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068380 ID=TCONS_00068380|Name=TCONS_00068380|organism=Clytia hemisphaerica|type=transcript|length=4114bp|location=Sequence derived from alignment at scaffold_483:259481..263594- (Clytia hemisphaerica)
AAAGAAGGAGGTTTTTATTCGAAATAATTTGAAGTAGTTGGAGGTAGGCT
GATTCAGCTTGGTTTATTACTAGATAGTGTACAATGTTTAAGAGTTCTTA
GGCTAATTGGTTTTATAGGTTAAATGTATAAATGGTCAGATGTTTTGAAA
CCCACAAATGACTTCTCTTACTAAACGCTTTGGTCCTTATCGTTATTTAC
CAGCTTTTTTTGTTCTTGGNTTATGGTTTTATATATAGGTTAAATATATA
AATGGTCAGATGTTTTGAAACCAACAAATGACTTCTCTTACTAAACGCTT
TGGTCCTTATCGTTATTTACCAGCTTTTTTTGTTCTTGGTGGATTACTTG
AACTGTTTATGATTAAAGTCCGAATAGGAAAGGAAACATTTTGTAAGTAT
ATTTTTTCTATTCCATTCTCTTTAGTCTTCCATTTTTCAATAGATCTTAT
CCGAGTTTTCGATTTTTCTAAAAAACCGATGCATTGTTGGATTGTTTTGA
GAGAATTACAATAGAAATCTCTTAGGAATTCCTTGAGGGAATTCTATTGT
AATACTCCCGAAACAATCCCGCAATGCATCGGATAAGGTTTATTACACAA
CGATTGTATTTCTTTTTACTTTAGACAATAACAAAATATCTTTGAAAAAA
AGTTATATTTTTAAAAACCGAACTTATTTTGTTGATATGTGTGATTTCAA
GATATTTCTCATATTTTATCCTTAGACGATACTGCTTTGAGGAAAGCTGC
AGAAAGAAAAATTGCAGAAGCAGACCAGACTGATAGTGAAAATTGAAAGA
AAATATATTAATTATAGGTATCAAACATACTCTTTTATCATAATAAACTT
TGTTTGATTAACACTAATTACTATTTATCTAGATGTTTTGCATGTATTTT
GCTGAGGTCTTTAGGCAAATACTTTTTTATTTATTGGTTTACGGATCCGC
AGACGTTATTTTTGCCAAAAAACAAAATATATAAATTTCAAAAACTTTTA
TTTACTTTTTCTCCTCCGACCTTCAAAAAAGAAGAAATAAATAAAAAACG
GGTTGGTGTAATTTAAGATGCACGATCTAACGATTTACGATTCACGATGC
GCGATCCATGCATAAAGTATGCTGATTATTCCGAATAATTATCATGAAAC
TTAAATTATATAACATAATTCTAAAACAAAGGCATAATATTTTCTCGCTT
TTGTTTACCACGGTAAATTCATGCAACGAAAAAGAAATAAGCAAGCAATG
GAACTATGAATAATTACGACCGTAAAATTATGAAAAAAACTAACTTGCAT
AATGTCGATAATGGAAGCTACCAAAGCTAACATCTTACAATAGACAGAGA
GTGAAAGTAAACAATGCACAAGAAATATTTTTGCTCTCCTCAATTTTGAC
AATCATAATCGAATATAGGAATTTCTTTCTTAAAAAGTAAATAAAAGAAT
ATATTGGCTAACAAAATGTTTTGCGTACCGTAATGTACGAAGCAAAAAAA
GGAAGGTGATAGAAATTGACCGTCAATCGAACATCACTCTTCTGTTTTTC
TACTCCCTATCTCTCTATCTTCTTTTCTATTTTCTGACTTTCTGAGACTT
GTGTTCTGCATTTCTACTAACTTTTGTATGAATTTGATCTTTCAAACTTT
CTCCAAATATCGACCCGACCGGGATTCGAACCCACCAAATGATTTGATCA
GAAACCCAGCGCACTATCCGTTGAGCCACACTCGCACAATCAAACACACA
ATTTGTAAATACTTATAGAATGACTAAAAAGAAGGGGGTAATGTTATTAT
AATATGGGTAAAATTGCCCCTTTTTTAACCTGACTGAAATTCGAGCCGTT
ACTAGCAACCCTGCGGGGCCCAAGGCGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAAGCCGTTACTAGCAACCCTGACCC
TACCTAACTGTTAGTTAATCAATTCGAAACAACGAAACCCCCGGAAACAC
AAAATTGTAGATAGGAAAAAAAACCATGTTCGACTGACGGTCAATTTTTA
TCATCTTCCGCAAAAAAACGGGTGCTCCATTATGAGAATAAGAATTTTTT
TTCGGTAAACAATTCCCCTATATTGATTCAAGTTATGAAAAAGAAAGAGT
ACAGAAGGTGAATGCACGTGGCCTTCACTTTCTTTTGATCTATATCTGAA
TTTAAATTGAAGAGAAAATAATTTGTATAATCTTACATAATTGATGTTTT
TAAAATTAATTGAGTTTCAGCGAATGAAAGTTTGTAAATTGCTAAAATAT
TTTATCATGATTAGCATAATTACGCATGAATTAACATATTTTATGCACAG
ATCGCGAATCGTGCATCGTAAATCGTTAGATCGTGCATCTTAAATTACAC
CAACCCATAAAAAACCTTTACTTAAACAGGAAAACAAAAGAAAAGAAGAG
AAAGAGAGAGGGGGTTAAATTATCTAACACAGCTGTGCCCTATTCTGCCA
ATGTAAAGATACTTTGATCCTTTCCTTAATGTCAGGGAACTTCCCCATGG
AATTTCCCTATCCACAAAAAACAACTTCAAGAGTAAATTTTTTCTGCACA
TGTGCTAAGAAGAAGATTGTTGAAGAGAGACTTATTTAAAAAATCGATAC
TTTTTCAAAGTTTTATAAAATTTTATTTTATTATTTCCTCCTATTTCCAA
TTTTAAAAAAGAAAATAAAAAAAATTTAAAACATCAATTTTATTTTTATT
TTTTTTCCATCCTCATGTCCAAAACTTTTCCTCATAATGTCTGTAAACCA
GAAAACAAAAAAGTAATTGCCTTAGGGTGTTTTAAAATTTGCATTTTTTA
TACTTTCTTTGGATATTTTTTGGGTGTATATGCCTGGCTTTTACATACAA
TAATTTTCTTTGATGTTTTCAGTTTTACTGCCTGGATCTAGGCTATTGGA
TTGCCCTAATCAGAAGTTTGAGCTTGATTTTTATTAAACATATTTTAATG
ACATGCATGTGGCATTTTCAGGTTATTTCATTTTTAATTGTTACACACCG
ACGTATCATCCATTCAATTCTATCATCTTTTAGTCAAGTTAGCTAAAGAA
ACAGACACAAATGCCAGCTGGAGTATCTTGGTCAAGATATTTGAAATTCA
CTGCTGCCTCCTTTGCATCTATGTTTGCAGGAAGTTCAGTTGTACATTGG
ATTTACAAGCCTGATTTAGTAAGATTTCATCTTTTATTCTTTCTAATTCC
CTTCATCTAGTTGTGATACTTACTTTGTCACACACGGTCAGTGAATAAAA
ATAGTTGGATGTCACAAAAACGCTTCAATCAATGTCAATCAGTGTCATTT
TTGAAGGCATTCCACATATATTCTCAGGTGCCTAATACATGGGGATGGGT
AGGTTAAAGTAAGAAAAGGGTAAATAAAGGTAAATAAGTTATATATAGAC
TAACATTTTAATATTTAGACCAAAATAATATATTTTCAAGAATTTGAAAT
TTCCCAGGTGGTATTGGCAGAAAAAATCAAATAATTAACTAACCATTTAT
TACAATATTAGCCAATGAGTATATAAAATATTAAAGTATATAAGTATTAA
AAATACCAAAAAAATCGTAAATATACATAATTAACAAAAATATTCTTCAC
TGTTTTCGTTTTTATCAGTTTAAGTTATTTATATATTATATTGCATATCT
TCACTATATACTGTCAATATTTTTAAGAGCTTTTTTCAACAAACAAAATT
ACAGACAGTTTCTTCTTATTTTAGACCATTCCAGAAATACCAAGAGATCT
TTCCAAGGTGAAATCAGAATCCTCTTTTATCTCATTCAAATCTGCCAGTG
AAGTCCAAGGAAAGCAAAGTGAATCCTAAATGTGTTATGTACAATTTGTA
AATAGTTTTTTTATGAGAATTATTAGAAATTTTAGAATGGAGAAAATATA
ATGATGATGAGTNGTATAAGAATTATTAGAAATTTTACAATGGAGAAAAT
ATAATGATGATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042672XLOC_042672Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068380-exon-scaffold_483-1575043694:263203..263594TCONS_00068380-exon-scaffold_483-1575043694:263203..263594Clytia hemisphaericaexon
TCONS_00068380-exon-scaffold_483-1575043694:262778..262869TCONS_00068380-exon-scaffold_483-1575043694:262778..262869Clytia hemisphaericaexon
TCONS_00068380-exon-scaffold_483-1575043694:260277..260411TCONS_00068380-exon-scaffold_483-1575043694:260277..260411Clytia hemisphaericaexon
TCONS_00068380-exon-scaffold_483-1575043694:259481..259720TCONS_00068380-exon-scaffold_483-1575043694:259481..259720Clytia hemisphaericaexon
TCONS_00068380-exon-scaffold_483-1510915933:263203..263594TCONS_00068380-exon-scaffold_483-1510915933:263203..263594Clytia hemisphaericaexon
TCONS_00068380-exon-scaffold_483-1510915933:262778..262869TCONS_00068380-exon-scaffold_483-1510915933:262778..262869Clytia hemisphaericaexon
TCONS_00068380-exon-scaffold_483-1510915933:260277..260411TCONS_00068380-exon-scaffold_483-1510915933:260277..260411Clytia hemisphaericaexon
TCONS_00068380-exon-scaffold_483-1510915933:259481..259720TCONS_00068380-exon-scaffold_483-1510915933:259481..259720Clytia hemisphaericaexon
TCONS_00068380-exon-scaffold_483-1491911889:263203..263594TCONS_00068380-exon-scaffold_483-1491911889:263203..263594Clytia hemisphaericaexon
TCONS_00068380-exon-scaffold_483-1491911889:262778..262869TCONS_00068380-exon-scaffold_483-1491911889:262778..262869Clytia hemisphaericaexon
TCONS_00068380-exon-scaffold_483-1491911889:260277..260411TCONS_00068380-exon-scaffold_483-1491911889:260277..260411Clytia hemisphaericaexon
TCONS_00068380-exon-scaffold_483-1491911889:259481..259720TCONS_00068380-exon-scaffold_483-1491911889:259481..259720Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:259481..263594 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.7253	21.1836	20.7029	20.7987	24.4371	19.5432	30.5251	31.5335	36.9796	28.4288	24.2758	20.829	14.4112	13.5713	16.3333	18.1601	30.6484	35.3194	7.71679	10.7465	23.5364	27.1819	33.9818	27.5376	19.5143	19.4557	20.2821	13.4985	22.8995	19.8128
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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