TCONS_00068395 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068395
Unique NameTCONS_00068395
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068395 ID=TCONS_00068395|Name=TCONS_00068395|organism=Clytia hemisphaerica|type=transcript|length=1442bp
GCTCTATGCAATTCCAATCTTCTAATCAAATTATGTTAAAATCCAGCAGT
TTTAGGAACTTCTTTTAAACATTTAACAATCTTTTTTCAATTGTACTTTT
AACTTGAATTGTTATTTTATTTAGGTATCTTAATTTTGAAATGATGTAAA
CTGAGGAACTTATGATAAAAAGCTATTGCTTTTAGCAGTATAACTATGAG
CATTAGCTTAGCCTTTATCAATGGCAATTCTGTCCCAGAGAAACGAAGTG
GCCATGTTGCAGTTTTTCATAATGGTCTATTGATAGTTTTCGGAGGTTAT
GGAGATAACCGTGATGATGCATCTGATGAATTCTTATACTTCAAATCAAT
ATGGTGTTACAGCGTGGAAGCTTCACAATGGACAAGACATAACTCTAAAG
gtaCACTTCCGGAGAAGAATACTGGGGCTTGTGCTGCAGTGATTGGGAAA
gaactttttttgtttggaggATATCTACAAAGTAGAGGTCATTCGAACCA
GCTAAGTTCTCTTGATTTAACAACATTCACTTGGAAAGACCTTAACGATA
GGACAACAGGAGTAACTCCCTCTTCAAGAGATAAGTTTGGTTGTTGGATT
GATGGTcagaatattatttattttggtGGGTTTGGGCACCCACCTGAAAA
TTGGAGTAAGGTGAAGggtgatttttgttttgaagaatttCCACTTGCAT
GGTCACATGGCACTGGATGGAATAACCATTTGCATATTTTGGATACTTCG
GTACTGAAATGGTCTCAACCTAAAGGCTCTGGGTCAGTACCATCACCAAG
agctgccttttcaacatcacAGAttggaagaaaatgttttttattcgGCG
GAAGATTTAAAGAGCACCGTCGCAATGATTTATATGTACTGGATTCTAAG
TCATTTCATTGGACACAGTTAGAGCCGATCGGTGACTCACCATCAGGTCG
CTCATGGCATGTTATGGAAAATGTAAGTAATAATCACTTGTTTATTTATG
GTGGTTTCGATAACGAAGGAAATGCACTTAAGGATACTTGGATTTACAAT
ATTTCACAAAACACGTGGTCGGAATTGAAAACAGCATCAAAGAACTTGGA
TATCTTTGCACCTAGAATGTGGCACACTGCATGCAAAACAGATTCCCCTG
GAGAGGTATTGATTTTTGGCGGCTGTATAAATTCAATAGTTGATGTGGTT
GATCGAGCTAAACATACTAATACAGTTTCTGTTTTTCGCTTCTCACCTTT
AAGCTTGCGTAGACAATGCTTGGATTTCATCATGTcaaatattgtaaaat
attctggAAATGTGATGGAGCTTCCTCAGTCTTTACGGAGAGATATCAGA
CATAGAAGCCTAGCTTTAGGTTTGCGATCACCAAATGGTCATGGAAAACT
TATAAGTAATTGTCAAATGATGTGAAGTTTTGTAATTggtaa
Run BLAST on NCBI

protein sequence of TCONS_00068395-protein

>TCONS_00068395-protein ID=TCONS_00068395-protein|Name=TCONS_00068395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp
MSISLAFINGNSVPEKRSGHVAVFHNGLLIVFGGYGDNRDDASDEFLYFK
SIWCYSVEASQWTRHNSKGTLPEKNTGACAAVIGKELFLFGGYLQSRGHS
NQLSSLDLTTFTWKDLNDRTTGVTPSSRDKFGCWIDGQNIIYFGGFGHPP
ENWSKVKGDFCFEEFPLAWSHGTGWNNHLHILDTSVLKWSQPKGSGSVPS
PRAAFSTSQIGRKCFLFGGRFKEHRRNDLYVLDSKSFHWTQLEPIGDSPS
GRSWHVMENVSNNHLFIYGGFDNEGNALKDTWIYNISQNTWSELKTASKN
LDIFAPRMWHTACKTDSPGEVLIFGGCINSIVDVVDRAKHTNTVSVFRFS
PLSLRRQCLDFIMSNIVKYSGNVMELPQSLRRDIRHRSLALGLRSPNGHG
KLISNCQMM
Run BLAST on NCBI

transcript from alignment at scaffold_483:393940..396141-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068395 ID=TCONS_00068395|Name=TCONS_00068395|organism=Clytia hemisphaerica|type=transcript|length=2202bp|location=Sequence derived from alignment at scaffold_483:393940..396141- (Clytia hemisphaerica)
GCTCTATGCAATTCCAATCTTCTAATCAAATTATGTTAAAATCCAGCAGT
TTTAGGAACTTCTTTTAAACATTTAACAATCTTTTTTCAATTGTACTTTT
AACTTGAATTGTTATTTTATTTAGGTATCTTAATTTTGAAATGATGTAAA
CTGAGGAACTTATGATAAAAAGCTATTGCTTTTAGCAGTATAACTATGAG
CATTAGCTTAGCCTTTATCAATGGCAATTCTGTCCCAGAGAAACGAAGTG
GCCATGTTGCAGTTTTTCATAATGGTCTATTGATAGTTTTCGGAGGTTAT
GGAGATAACCGTGATGATGCATCTGATGAATTCTTATACTTCAAATCAAT
ATGGTGTTACAGCGTGGAAGCTTCACAATGGACAAGACATAACTCTAAAG
GTAAACACAGGGTTCGAATTATTAATTTTGAGAGCTTTGCAATTTTTCCG
AGCGAATTGAGGTAAAAAAAGTTAGCACCGCAGGCAAAATTCTTTTTACT
GTTTGCGAAGCATTTTTAGTATTTTGCGATGTTGTTTGGAAGAAAATGCA
AAAGTATATTCAATGCATTTCTCAAGAAAAGCGAAGTAAGAGATTGTAGA
CGAAGCAAGAGATTGTAGACGAAGCAAACTTTAGTGAGTTGATAAAGCAG
TAGATAAACGCATTTTTGTGCTAGGAAATCTTTTTTGGTCGCTAAATCAT
TTTGCGAAGTGCAAAGCTATAATTTGAACCTTAAAACATATCATCATTAT
TGATAAATTCTACCCTTTTTAATTAAGGGATTTAAGGAATAAAAATACTC
AAACTAATTTGTGTGATCCATACAAATAGAAACATATTGGGAAAACTACC
AGCCATAAAAATTCAGAATTTTCATTGGGATTACAGCTATTAAAATTTTA
AATCTTTTTTCACTAAACTATGAACGTTGGTTTGTATGTTTATATTTTAT
TCTTTTTGGAGCATCTTTTTTAATAATCATTCAACTGTCATTTATATTAA
CAAAATTTCAATTAACTTCCCATTGTAATTATCACCTTGCTTTAAAAATG
AACTTTCTTGACCATTTAATCTGATTTAATTAAAACTTTCCATTAAATAT
ATCTTCTTATTTCTTATATTTTTTATGATATATAACCCGATTCCCATGAA
ATATTTTTAGGTACACTTCCGGAGAAGAATACTGGGGCTTGTGCTGCAGT
GATTGGGAAAGAACTTTTTTTGTTTGGAGGATATCTACAAAGTAGAGGTC
ATTCGAACCAGCTAAGTTCTCTTGATTTAACAACATTCACTTGGAAAGAC
CTTAACGATAGGACAACAGGAGTAACTCCCTCTTCAAGAGATAAGTTTGG
TTGTTGGATTGATGGTCAGAATATTATTTATTTTGGTGGGTTTGGGCACC
CACCTGAAAATTGGAGTAAGGTGAAGGGTGATTTTTGTTTTGAAGAATTT
CCACTTGCATGGTCACATGGCACTGGATGGAATAACCATTTGCATATTTT
GGATACTTCGGTACTGAAATGGTCTCAACCTAAAGGCTCTGGGTCAGTAC
CATCACCAAGAGCTGCCTTTTCAACATCACAGATTGGAAGAAAATGTTTT
TTATTCGGCGGAAGATTTAAAGAGCACCGTCGCAATGATTTATATGTACT
GGATTCTAAGTCATTTCATTGGACACAGTTAGAGCCGATCGGTGACTCAC
CATCAGGTCGCTCATGGCATGTTATGGAAAATGTAAGTAATAATCACTTG
TTTATTTATGGTGGTTTCGATAACGAAGGAAATGCACTTAAGGATACTTG
GATTTACAATATTTCACAAAACACGTGGTCGGAATTGAAAACAGCATCAA
AGAACTTGGATATCTTTGCACCTAGAATGTGGCACACTGCATGCAAAACA
GATTCCCCTGGAGAGGTATTGATTTTTGGCGGCTGTATAAATTCAATAGT
TGATGTGGTTGATCGAGCTAAACATACTAATACAGTTTCTGTTTTTCGCT
TCTCACCTTTAAGCTTGCGTAGACAATGCTTGGATTTCATCATGTCAAAT
ATTGTAAAATATTCTGGAAATGTGATGGAGCTTCCTCAGTCTTTACGGAG
AGATATCAGACATAGAAGCCTAGCTTTAGGTTTGCGATCACCAAATGGTC
ATGGAAAACTTATAAGTAATTGTCAAATGATGTGAAGTTTTGTAATTGGT
AA

Coding sequence (CDS) from alignment at scaffold_483:393940..396141-

>TCONS_00068395 ID=TCONS_00068395|Name=TCONS_00068395|organism=Clytia hemisphaerica|type=CDS|length=2460bp|location=Sequence derived from alignment at scaffold_483:393940..396141- (Clytia hemisphaerica)
GTACACTTCCGGAGAAGAATACTGGGGCTTGTGCTGCAGTGATTGGGAAA
GAACTTTTTTTGTTTGGAGGATATCTACAAAGTAGAGGTCATTCGAACCA
GCTAAGTTCTCTTGATTTAACAACATTCACTTGGAAAGACCTTAACGATA
GGACAACAGGAGTAACTCCCTCTTCAAGAGATAAGTTTGGTTGTTGGATT
GATGGTCAGAATATTATTTATTTTGGTGGGTTTGGGCACCCACCTGAAAA
TTGGAGTAAGGTGAAGGGTGATTTTTGTTTTGAAGAATTTCCACTTGCAT
GGTCACATGGCACTGGATGGAATAACCATTTGCATATTTTGGATACTTCG
GTACTGAAATGGTCTCAACCTAAAGGCTCTGGGTCAGTACCATCACCAAG
AGCTGCCTTTTCAACATCACAGATTGGAAGAAAATGTTTTTTATTCGGCG
GAAGATTTAAAGAGCACCGTCGCAATGATTTATATGTACTGGATTCTAAG
TCATTTCATTGGACACAGTTAGAGCCGATCGGTGACTCACCATCAGGTCG
CTCATGGCATGTTATGGAAAATGTAAGTAATAATCACTTGTTTATTTATG
GTGGTTTCGATAACGAAGGAAATGCACTTAAGGATACTTGGATTTACAAT
ATTTCACAAAACACGTGGTCGGAATTGAAAACAGCATCAAAGAACTTGGA
TATCTTTGCACCTAGAATGTGGCACACTGCATGCAAAACAGATTCCCCTG
GAGAGGTATTGATTTTTGGCGGCTGTATAAATTCAATAGTTGATGTGGTT
GATCGAGCTAAACATACTAATACAGTTTCTGTTTTTCGCTTCTCACCTTT
AAGCTTGCGTAGACAATGCTTGGATTTCATCATGTCAAATATTGTAAAAT
ATTCTGGAAATGTGATGGAGCTTCCTCAGTCTTTACGGAGAGATATCAGA
CATAGAAGCCTAGCTTTAGGTTTGCGATCACCAAATGGTCATGGAAAACT
TATAAGTAATTGTCAAATGATGTGAATGAGCATTAGCTTAGCCTTTATCA
ATGGCAATTCTGTCCCAGAGAAACGAAGTGGCCATGTTGCAGTTTTTCAT
AATGGTCTATTGATAGTTTTCGGAGGTTATGGAGATAACCGTGATGATGC
ATCTGATGAATTCTTATACTTCAAATCAATATGGTGTTACAGCGTGGAAG
CTTCACAATGGACAAGACATAACTCTAAAGGTACACTTCCGGAGAAGAAT
ACTGGGGCTTGTGCTGCAGTGATTGGGAAAGAACTTTTTTTGTTTGGAGG
ATATCTACAAAGTAGAGGTCATTCGAACCAGCTAAGTTCTCTTGATTTAA
CAACATTCACTTGGAAAGACCTTAACGATAGGACAACAGGAGTAACTCCC
TCTTCAAGAGATAAGTTTGGTTGTTGGATTGATGGTCAGAATATTATTTA
TTTTGGTGGGTTTGGGCACCCACCTGAAAATTGGAGTAAGGTGAAGGGTG
ATTTTTGTTTTGAAGAATTTCCACTTGCATGGTCACATGGCACTGGATGG
AATAACCATTTGCATATTTTGGATACTTCGGTACTGAAATGGTCTCAACC
TAAAGGCTCTGGGTCAGTACCATCACCAAGAGCTGCCTTTTCAACATCAC
AGATTGGAAGAAAATGTTTTTTATTCGGCGGAAGATTTAAAGAGCACCGT
CGCAATGATTTATATGTACTGGATTCTAAGTCATTTCATTGGACACAGTT
AGAGCCGATCGGTGACTCACCATCAGGTCGCTCATGGCATGTTATGGAAA
ATGTAAGTAATAATCACTTGTTTATTTATGGTGGTTTCGATAACGAAGGA
AATGCACTTAAGGATACTTGGATTTACAATATTTCACAAAACACGTGGTC
GGAATTGAAAACAGCATCAAAGAACTTGGATATCTTTGCACCTAGAATGT
GGCACACTGCATGCAAAACAGATTCCCCTGGAGAGGTATTGATTTTTGGC
GGCTGTATAAATTCAATAGTTGATGTGGTTGATCGAGCTAAACATACTAA
TACAGTTTCTGTTTTTCGCTTCTCACCTTTAAGCTTGCGTAGACAATGCT
TGGATTTCATCATGTCAAATATTGTAAAATATTCTGGAAATGTGATGGAG
CTTCCTCAGTCTTTACGGAGAGATATCAGACATAGAAGCCTAGCTTTAGG
TTTGCGATCACCAAATGGTCATGGAAAACTTATAAGTAATTGTCAAATGA
TGTGAATGAGCATTAGCTTAGCCTTTATCAATGGCAATTCTGTCCCAGAG
AAACGAAGTGGCCATGTTGCAGTTTTTCATAATGGTCTATTGATAGTTTT
CGGAGGTTATGGAGATAACCGTGATGATGCATCTGATGAATTCTTATACT
TCAAATCAATATGGTGTTACAGCGTGGAAGCTTCACAATGGACAAGACAT
AACTCTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042677XLOC_042677Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068395-proteinTCONS_00068395-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068395-exon-scaffold_483-1575043694:395742..396141TCONS_00068395-exon-scaffold_483-1575043694:395742..396141Clytia hemisphaericaexon
TCONS_00068395-exon-scaffold_483-1575043694:393940..394981TCONS_00068395-exon-scaffold_483-1575043694:393940..394981Clytia hemisphaericaexon
TCONS_00068395-exon-scaffold_483-1510915933:395742..396141TCONS_00068395-exon-scaffold_483-1510915933:395742..396141Clytia hemisphaericaexon
TCONS_00068395-exon-scaffold_483-1510915933:393940..394981TCONS_00068395-exon-scaffold_483-1510915933:393940..394981Clytia hemisphaericaexon
TCONS_00068395-exon-scaffold_483-1491911889:395742..396141TCONS_00068395-exon-scaffold_483-1491911889:395742..396141Clytia hemisphaericaexon
TCONS_00068395-exon-scaffold_483-1491911889:393940..394981TCONS_00068395-exon-scaffold_483-1491911889:393940..394981Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:393940..396141 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.83395	3.78793	2.57373	3.05984	11.0588	7.97223	10.7649	11.1516	11.1536	11.1425	11.7189	7.41608	15.156	15.4217	13.2179	13.8867	10.1089	13.0402	10.3384	11.7466	10.4046	8.30457	7.15908	8.84815	28.3905	25.779	9.903	6.61073	6.89825	7.54884
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015915Kelch-typ_b-propeller
IPR006652Kelch_1
IPR011043Gal_Oxase/kelch_b-propeller
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00068395 vs. Swiss-Prot (Human)
Match: KLDC2 (Kelch domain-containing protein 2 OS=Homo sapiens GN=KLHDC2 PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 3.144e-88
Identity = 149/383 (38.90%), Postives = 227/383 (59.27%), Query Frame = 1 
Query:  229 SVPEKRSGHVAVFHNGLLIVFGGYGDNR-DDASDEFLYFKSIWCYSVEASQWTRHNSKGTLPEKNTGACAAVIGKELFLFGGYLQSRGHSNQLSSLDLTT----FTWKDLNDRTTGVTPSSRDKFGCWIDGQNIIYFGGFGHPPENWSKVKGDFCFEEFPLAW--SHGTGWNNHLHILDTSVLKWSQPKGSGSVPSPRAAFSTSQIGRKCFLFGGRFKEHRRNDLYVLDSKSFHWTQLEPIGDSPSGRSWHVMENVSNNHLFIYGGFDNEGNALKDTWIYNISQNTWSELKTASKNLDIFAPRMWHTACKTDSPGEVLIFGGCINSIVDVVDRAKHTNTVSVFRFSPLSLRRQCLDFIMSNIVKYSGNVMELPQSLRRDIRHR 1356
            + P +RSGHVAV     + V+GGY  N+     D +L  + +W Y++E  +W + N++G +P   +G+CA  + + L+LFGG+  SRG++N+   LD  +      W+ ++    G+ PSS+DK G W+    +I+FGG+G+ PE+  KV G F F+E    W  SH  GWN+H+HILDT    WSQP  +G  PSPRAA + + +G + F+FGGR+++ R NDL+ L+  ++ W +L P G  P GRSWH +  VS++HLF++GGF  +   L D W Y IS+N W +            PR+WHTAC +D  GEV++FGGC N+++ V  RA H+N + +F   P SL R  L+ ++      + +   LP+ L   +  R
Sbjct:   27 ACPAERSGHVAVSDGRHMFVWGGYKSNQVRGLYDFYLPREELWIYNMETGRWKKINTEGDVPPSMSGSCAVCVDRVLYLFGGH-HSRGNTNKFYMLDSRSTDRVLQWERID--CQGIPPSSKDKLGVWVYKNKLIFFGGYGYLPED--KVLGTFEFDETSF-WNSSHPRGWNDHVHILDTETFTWSQPITTGKAPSPRAAHACATVGNRGFVFGGRYRDARMNDLHYLNLDTWEWNELIPQGICPVGRSWHSLTPVSSDHLFLFGGFTTDKQPLSDAWTYCISKNEWIQFNHPYTE----KPRLWHTACASDE-GEVIVFGGCANNLL-VHHRAAHSNEILIFSVQPKSLVRLSLEAVICFKEMLANSWNCLPKHLLHSVNQR 397
The following BLAST results are available for this feature:
BLAST of TCONS_00068395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLDC23.144e-8838.90Kelch domain-containing protein 2 OS=Homo sapiens ... [more]
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