TCONS_00068428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068428
Unique NameTCONS_00068428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1083

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068428 ID=TCONS_00068428|Name=TCONS_00068428|organism=Clytia hemisphaerica|type=transcript|length=1083bp
gaaattcaatattattatttttccgTTTGCAGCAAATGCTGGGTCGGTCG
CGCCTGTAGagcaacaaatcaaattggtctcgccttattgTGGATACGTA
GTCTAATTAACAAATGTGAGTTGAAGTTAATTtgccaaaataaagatata
ttaACTTATTATATTACATAATGCAATCGTCTATTCataataaaatagaa
aaatgataaatttaaaACTTAAAAGGTTATAAAATAGAACATATTGGTAA
TATGCACCATTCCAATGTTATCTGACATTACATAACAGACCCGACAgttg
attggttgcaagtgaagTTAATTGGTCGTAAGTGACGTAAATTTagccaa
tacgtcacttgcaaccaatcagctgttggatccgtgatgtaatgtcatgT
GATGAATTGGTATAATCATCATCCAATGAATTTGGTATGTTTTCCAGTCA
CAAGTAATTTATcgtcttttttaaattctgctTCCATAAATGCTATATTC
CTACCTTTCTTTTTACATTCTGTTTCGATGGTTACTATATCACCAACTTT
TGCTGCACTCATATACGAGAGACTCATATCAACGCTGACACCAGAACGAT
TACCTTCCATCACCATCAGTGCTCCAGTTGTGCTATAATCTAAAATATAA
GCAGTGTAACCACCATGTAATGTCCCCAAACCATTTAAATGTTCTTCTTC
AACTTTGAATTGAAATGTACATTTTCCAGTATCGCTAGCCTTGATCACCT
CTAAATTCTTTGCAAGACGATCCATTCTGTTTGTGTTTGATAAGACTGAC
ATTCCTTGCCGCATtaactttatcaaattttttgatgccattttcaattt
tcttttctgcTATtgtcatatattttttataaaacctttaaaatagtgta
aagtttttttatgagaaatgaATCTTTTGTAGGATGTGACGTCATGTGAC
ATCGCGTCACGTGGCATTGAATAACAAATCGCTACATCATACGTTACTTG
TCTTCAGCCAGTACAAACGGGATGAACTGTTTGTTGTGAAGGACAAATCA
ATCCGATGTTGTTATCATTAAAGAGAATCATTC
Run BLAST on NCBI

protein sequence of TCONS_00068428-protein

>TCONS_00068428-protein ID=TCONS_00068428-protein|Name=TCONS_00068428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MASKNLIKLMRQGMSVLSNTNRMDRLAKNLEVIKASDTGKCTFQFKVEEE
HLNGLGTLHGGYTAYILDYSTTGALMVMEGNRSGVSVDMSLSYMSAAKVG
DIVTIETECKKKGRNIAFMEAEFKKDDKLLVTGKHTKFIG
Run BLAST on NCBI

transcript from alignment at scaffold_483:557596..558678

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068428 ID=TCONS_00068428|Name=TCONS_00068428|organism=Clytia hemisphaerica|type=transcript|length=1083bp|location=Sequence derived from alignment at scaffold_483:557596..558678 (Clytia hemisphaerica)
GAATGATTCTCTTTAATGATAACAACATCGGATTGATTTGTCCTTCACAA
CAAACAGTTCATCCCGTTTGTACTGGCTGAAGACAAGTAACGTATGATGT
AGCGATTTGTTATTCAATGCCACGTGACGCGATGTCACATGACGTCACAT
CCTACAAAAGATtcatttctcataaaaaaactttacactattttaaaggt
tttataaaaaatatatgacaATAgcagaaaagaaaattgaaaatggcatc
aaaaaatttgataaagttaATGCGGCAAGGAATGTCAGTCTTATCAAACA
CAAACAGAATGGATCGTCTTGCAAAGAATTTAGAGGTGATCAAGGCTAGC
GATACTGGAAAATGTACATTTCAATTCAAAGTTGAAGAAGAACATTTAAA
TGGTTTGGGGACATTACATGGTGGTTACACTGCTTATATTTTAGATTATA
GCACAACTGGAGCACTGATGGTGATGGAAGGTAATCGTTCTGGTGTCAGC
GTTGATATGAGTCTCTCGTATATGAGTGCAGCAAAAGTTGGTGATATAGT
AACCATCGAAACAGAATGTAAAAAGAAAGGTAGGAATATAGCATTTATGG
AagcagaatttaaaaaagacgATAAATTACTTGTGACTGGAAAACATACC
AAATTCATTGGATGATGATTATACCAATTCATCAcatgacattacatcac
ggatccaacagctgattggttgcaagtgacgtattggctAAATTTACGTC
ACTTACGACCAATTAActtcacttgcaaccaatcaacTGTCGGGTCTGTT
ATGTAATGTCAGATAACATTGGAATGGTGCATATTACCAATATGTTCTAT
TTTATAACCTTTTAAGTtttaaatttatcatttttctattttattatGAA
TAGACGATTGCATTATGTAATATAATAAGTtaatatatctttattttggc
aAATTAACTTCAACTCACATTTGTTAATTAGACTACGTATCCAcaataag
gcgagaccaatttgatttgttgctCTACAGGCGCGACCGACCCAGCATTT
GCTGCAAAcggaaaaataataatattgaatttc

Coding sequence (CDS) from alignment at scaffold_483:557596..558678

>TCONS_00068428 ID=TCONS_00068428|Name=TCONS_00068428|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_483:557596..558678 (Clytia hemisphaerica)
atggcatcaaaaaatttgataaagttaATGCGGCAAGGAATGTCAGTCTT
ATCAAACACAAACAGAATGGATCGTCTTGCAAAGAATTTAGAGGTGATCA
AGGCTAGCGATACTGGAAAATGTACATTTCAATTCAAAGTTGAAGAAGAA
CATTTAAATGGTTTGGGGACATTACATGGTGGTTACACTGCTTATATTTT
AGATTATAGCACAACTGGAGCACTGATGGTGATGGAAGGTAATCGTTCTG
GTGTCAGCGTTGATATGAGTCTCTCGTATATGAGTGCAGCAAAAGTTGGT
GATATAGTAACCATCGAAACAGAATGTAAAAAGAAAGGTAGGAATATAGC
ATTTATGGAagcagaatttaaaaaagacgATAAATTACTTGTGACTGGAA
AACATACCAAATTCATTGGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042701XLOC_042701Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068428-proteinTCONS_00068428-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068428-exon-scaffold_483-1491911889:557596..558678TCONS_00068428-exon-scaffold_483-1491911889:557596..558678Clytia hemisphaericaexon
TCONS_00068428-exon-scaffold_483-1510915933:557596..558678TCONS_00068428-exon-scaffold_483-1510915933:557596..558678Clytia hemisphaericaexon
TCONS_00068428-exon-scaffold_483-1575043694:557596..558678TCONS_00068428-exon-scaffold_483-1575043694:557596..558678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:557596..558678 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.1734	32.1214	22.7965	24.686	9.68917	8.30537	17.0133	18.5659	21.2862	21.3848	16.4091	10.4893	8.51496	5.1983	15.129	16.4587	22.5773	14.9236	5.82533	10.9838	11.8739	12.5965	25.6387	23.9821	11.5493	11.1243	30.5018	22.9648	24.219	20.2659
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006683Thioestr_dom
IPR029069HotDog_dom
Blast
[Close]
BLAST of TCONS_00068428 vs. Swiss-Prot (Human)
Match: ACO13 (Acyl-coenzyme A thioesterase 13 OS=Homo sapiens GN=ACOT13 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.574e-24
Identity = 50/133 (37.59%), Postives = 80/133 (60.15%), Query Frame = -3 
Query:  422 MRQGMSVLSNTNRMDRLAKNLEVIKASDTGKCTFQFKVEEEHLNGLGTLHGGYTAYILDYSTTGALMVMEGNRSGVSVDMSLSYMSAAKVGDIVTIETECKKKGRNIAFMEAEF--KKDDKLLVTGKHTKFIG 814
            +R+ +  ++     +R+   + ++ A+  GK   + KVEEEH N +GTLHGG TA ++D  +T AL+  E    GVSVDM+++YMS AK+G+ + I     K+G+ +AF   +   K   KL+  G+HTK +G
Sbjct:    8 LREVIKAMTKARNFERVLGKITLVSAAP-GKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKHLG 139
The following BLAST results are available for this feature:
BLAST of TCONS_00068428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACO132.574e-2437.59Acyl-coenzyme A thioesterase 13 OS=Homo sapiens GN... [more]
back to top