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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068467 ID=TCONS_00068467|Name=TCONS_00068467|organism=Clytia hemisphaerica|type=transcript|length=818bp
caaaaacaaaagattaagaaaataaaaagaaataaatgaagAGAATGAGA
TGAGTACACCATTGTACATCCTCCAAAGCGAGTATTGGGTTCGCATCAAC
CTCGCTTCGGAGTATTGTATCAAAGAAGCGCTCATTGATGTACTTCACAA
CGTGCACAAAGACCCTTTTTATACTGGACTTCCAACTTGTCCAAAACAAC
TTTATCAAATATTCGTGCAATGCAAACAAGACAATAAACACGAGTTGAAC
AAAGTGTTGAAGAAAGAACAATGGCAAATATTGTGTCCACAAAATGGATC
ATCCAACCCAGAGGATTGGGATATCACCTTACTGATTGCTGTATTGAGGT
CAGTGGCAGTGGTTGGATTGCAACCTGCTGGAGGATGGAAAATCAAATCT
CTTCAATCCAACGATCAATCTATTGGAGCTTTCTTGTTTTTGATCAGAAA
TTTAAGAAATGACTTAATACATGGTTCAGTCAATGCAGTACCAAATTTAC
AAGCTTTCAAACAACTGAGATCTCGAATGGAGAACATTTTACTGGGATTG
AAATACAAGAATATGCAAATGTTTTATGATTTGGAAAGTTGTCCATTGGA
TAAACATGTGTTGGTTATTTCTCGAATGGTCACCAATTTGGATCAAGAAG
TGGATTTGTTGCGAAATGAAGCGAGCGATAATTCGAATGCTATCAAAAAT
ATCGAACAACATAATCAATGGATGAAAACTTATTTGAAACAATTATCTTC
GGCAAAAGCTGACAAAACTGACGTCGAAGATTTAGCCAAGTCAATGAATA
GTGGACTGAATACGAAAG Run BLAST on NCBI protein sequence of TCONS_00068467-protein >TCONS_00068467-protein ID=TCONS_00068467-protein|Name=TCONS_00068467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MSTPLYILQSEYWVRINLASEYCIKEALIDVLHNVHKDPFYTGLPTCPKQ
LYQIFVQCKQDNKHELNKVLKKEQWQILCPQNGSSNPEDWDITLLIAVLR
SVAVVGLQPAGGWKIKSLQSNDQSIGAFLFLIRNLRNDLIHGSVNAVPNL
QAFKQLRSRMENILLGLKYKNMQMFYDLESCPLDKHVLVISRMVTNLDQE
VDLLRNEASDNSNAIKNIEQHNQWMKTYLKQLSSAKADKTDVEDLAKSMN
SGLNTK Run BLAST on NCBI transcript from alignment at scaffold_485:94375..97551+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068467 ID=TCONS_00068467|Name=TCONS_00068467|organism=Clytia hemisphaerica|type=transcript|length=3177bp|location=Sequence derived from alignment at scaffold_485:94375..97551+ (Clytia hemisphaerica)
caaaaacaaaagattaagaaaataaaaagaaataaatgaagAGAATGAGA
TGAGTACACCATTGTACATCCTCCAAAGCGAGTATTGGGTTCGCATCAAC
CTCGCTTCGGAGTATTGTATCAAAGAAGCGCTCATTGATGTACTTCACAA
CGTGCACAAAGACCCTTTTTATACTGGACTTCCAACTTGTCCAAAACAAC
TTTATCAAATATTCGTGCAATGCAAACAAGACAATAAACACGAGTTGAAC
AAAGTGTTGAAGAAAGAACAATGGCAAATATTGTGTCCACAAAATGGATC
ATCCAACCCAGAGGATTGGGATATCACCTTACTGATTGCTGTATTGAGGT
CAGTGGCAGTGGTTGGATTGCAACCTGCTGGAGGATGGAAAATCAAATCT
CTTCAATCCAACGATCAATCTATTGGAGCTTTCTTGTTTTTGATCAGAAA
TTTAAGAAATGACTTAATACATGGTTCAGTCAATGCAGTACCAAATTTAC
AAGCTTTCAAACAACTGAGATCTCGAATGGAGAACATTTTACTGGGATTG
AAATACAAGAATATGCAAATGTTTTATGATTTGGAAAGTTGTCCATTGGA
TAAACATGTGTTGGTTATTTCTCGAATGGTCACCAATTTGGATCAAGAAG
TGGATTTGTTGCGAAATGAAGCGAGCGATAATTCGAATGCTATCAAAAAT
ATCGAACAACATAATCAATGGATGAAAACTTATTTGAAACAATTATCTTC
GGCAAAAGCTGACAAAACTGACGTCGAAGGTGAGATACattggttttcaa
ttttttcgaaaGCACATTTACTTTCTTACTTCTTTTGAAGTCTTTGTGTT
GTAAGAGCTGAATCTTGTTAAACTTATTACCAGTTGCCCCCAATTTTTGT
GGTCATTGAGTAACAccatcatagtgtcctcccccctggattcagggggg
ggatgggttttgaggtcaaaaggacgtataggggggaaagaatttttttt
gaagccagggtgGGAAAAAACGAGGGggggggatggaaaattttcattct
aggcatgggggggggatactcaccaaaatcaattcaaaattgaaaaacat
ctggttttatgagatgatatagcataatgcttagttttattaatattatg
gtttgaaaacaaccatcctttccatttcttcttgaattagaactacctta
gggaaaacaataagcgttaagttcatcaaattatagcctggagatccatg
ttatgatttcttattctatatactgatggcaaaatatatagcatggtacg
ggctgacagtttgaatttcccatatcctaataacggttgaaaacacagcc
aatcaaattctgttatcgtttcactggtcacactttcttaaagaaagtgc
aagttccgaaatttaatttttattttagtaagtgaatacagcgctaaatt
cgaatttcccactgtaatttttttgaggccaaaatcggactcacagctct
gacccgtcaagtattcatcagattaaaaaaaaatacgcaNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCAACATAATCAATGGATCAAAACTTATTTGAAACAATTA
TCTTCGGCAAAAGCTGAGAAAACTGACGTCGAAGGTGAGTTGCATTGGCT
TTAACTTTGTCGAAATCACATTTACTTTCTTaactgttttgaatttttga
cattttaggaGCTGAATCTTGTTAACCTTTTTAACCTCTTGACACTGAAT
TTTGCGGTCCTTGAATAACACCATTTGTTTTACTCTAGATTTAGCCAAGT
CAATGAATAGTGGACTGAATACGAAAG Coding sequence (CDS) from alignment at scaffold_485:94375..97551+ >TCONS_00068467 ID=TCONS_00068467|Name=TCONS_00068467|organism=Clytia hemisphaerica|type=CDS|length=1536bp|location=Sequence derived from alignment at scaffold_485:94375..97551+ (Clytia hemisphaerica)
ATGAGTACACCATTGTACATCCTCCAAAGCGAGTATTGGGTTCGCATCAA
CCTCGCTTCGGAGTATTGTATCAAAGAAGCGCTCATTGATGTACTTCACA
ACGTGCACAAAGACCCTTTTTATACTGGACTTCCAACTTGTCCAAAACAA
CTTTATCAAATATTCGTGCAATGCAAACAAGACAATAAACACGAGTTGAA
CAAAGTGTTGAAGAAAGAACAATGGCAAATATTGTGTCCACAAAATGGAT
CATCCAACCCAGAGGATTGGGATATCACCTTACTGATTGCTGTATTGAGG
TCAGTGGCAGTGGTTGGATTGCAACCTGCTGGAGGATGGAAAATCAAATC
TCTTCAATCCAACGATCAATCTATTGGAGCTTTCTTGTTTTTGATCAGAA
ATTTAAGAAATGACTTAATACATGGTTCAGTCAATGCAGTACCAAATTTA
CAAGCTTTCAAACAACTGAGATCTCGAATGGAGAACATTTTACTGGGATT
GAAATACAAGAATATGCAAATGTTTTATGATTTGGAAAGTTGTCCATTGG
ATAAACATGTGTTGGTTATTTCTCGAATGGTCACCAATTTGGATCAAGAA
GTGGATTTGTTGCGAAATGAAGCGAGCGATAATTCGAATGCTATCAAAAA
TATCGAACAACATAATCAATGGATGAAAACTTATTTGAAACAATTATCTT
CGGCAAAAGCTGACAAAACTGACGTCGAAGATTTAGCCAAGTCAATGAAT
AGTGGACTGAATACGAAAATGAGTACACCATTGTACATCCTCCAAAGCGA
GTATTGGGTTCGCATCAACCTCGCTTCGGAGTATTGTATCAAAGAAGCGC
TCATTGATGTACTTCACAACGTGCACAAAGACCCTTTTTATACTGGACTT
CCAACTTGTCCAAAACAACTTTATCAAATATTCGTGCAATGCAAACAAGA
CAATAAACACGAGTTGAACAAAGTGTTGAAGAAAGAACAATGGCAAATAT
TGTGTCCACAAAATGGATCATCCAACCCAGAGGATTGGGATATCACCTTA
CTGATTGCTGTATTGAGGTCAGTGGCAGTGGTTGGATTGCAACCTGCTGG
AGGATGGAAAATCAAATCTCTTCAATCCAACGATCAATCTATTGGAGCTT
TCTTGTTTTTGATCAGAAATTTAAGAAATGACTTAATACATGGTTCAGTC
AATGCAGTACCAAATTTACAAGCTTTCAAACAACTGAGATCTCGAATGGA
GAACATTTTACTGGGATTGAAATACAAGAATATGCAAATGTTTTATGATT
TGGAAAGTTGTCCATTGGATAAACATGTGTTGGTTATTTCTCGAATGGTC
ACCAATTTGGATCAAGAAGTGGATTTGTTGCGAAATGAAGCGAGCGATAA
TTCGAATGCTATCAAAAATATCGAACAACATAATCAATGGATGAAAACTT
ATTTGAAACAATTATCTTCGGCAAAAGCTGACAAAACTGACGTCGAAGAT
TTAGCCAAGTCAATGAATAGTGGACTGAATACGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068467-exon-scaffold_485-1491911889:94375..95153 | TCONS_00068467-exon-scaffold_485-1491911889:94375..95153 | Clytia hemisphaerica | exon |
| TCONS_00068467-exon-scaffold_485-1510915933:94375..95153 | TCONS_00068467-exon-scaffold_485-1510915933:94375..95153 | Clytia hemisphaerica | exon |
| TCONS_00068467-exon-scaffold_485-1575043694:94375..95153 | TCONS_00068467-exon-scaffold_485-1575043694:94375..95153 | Clytia hemisphaerica | exon |
| TCONS_00068467-exon-scaffold_485-1491911889:97513..97551 | TCONS_00068467-exon-scaffold_485-1491911889:97513..97551 | Clytia hemisphaerica | exon |
| TCONS_00068467-exon-scaffold_485-1510915933:97513..97551 | TCONS_00068467-exon-scaffold_485-1510915933:97513..97551 | Clytia hemisphaerica | exon |
| TCONS_00068467-exon-scaffold_485-1575043694:97513..97551 | TCONS_00068467-exon-scaffold_485-1575043694:97513..97551 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:94375..97551 + |
Blast
The following BLAST results are available for this feature:
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