TCONS_00068600 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068600
Unique NameTCONS_00068600
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length825

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068600 ID=TCONS_00068600|Name=TCONS_00068600|organism=Clytia hemisphaerica|type=transcript|length=825bp
aaacattcaaaatagATCAGTGcatcaaaaatattcaaaacaaataaaat
tggtCAAGTAATTatagaaaaaagtaaaataagaaaaaaatgaaaggtaT
AGAAGTTTTGTCTGGTCATACCTTTTTTGCTCACCTTGTACTGTAGTATA
CACGAAATTTTAggtgatcatttaaaaaagttatccTTAATCGACTTTGG
TAAGTTCAATTGTACCAAATCATTGATGGAATAATTCAACAATACAACTT
TAAGTGGAGAATGTAACAGTGGTTCCACAAACCTtgttttcaatttgaaa
acttGCCAAAAGAATTTATTGTCAACCCCGCTATAAAACACCACTACTTC
ATTTGAACACCAATTCAACTGGACATTTAAAATATCCAACAATTCTTCAA
AGTTCTCCCAGATTTCTAAGGCTTTTGTATGAACAATAACAGAAATCTTT
AAGAAACGCAAATAAGCTTTGTCTGGTTTAAAATGATAATTGAATGCATT
GTCAACATGTAAAAGTCTAAGTTGTGGAACCAACCCTAAAATCTCAAGCC
ATTTACAACTGAAATCAGAGGTGTGCAACTCACGaatagaaaaatttgaa
atcttgtgTAGAAATGCAATGTCCTTTGTATTCTTGGTATATCTTGGTTT
TGACCAAAGCCTCATCATTGACAACTGGTGCATCTTCTTTGAAGTAAGAG
CAATATTCTGAGCACTTTTGAGATCTAAGTAAGAAATCACTAATTTCCAG
AGCTCATTTGGCAAATccatttcaacaattttcttttATCCCTTTTTTGT
TTAGTTTCTTACTTTTGCACTTAAA
Run BLAST on NCBI

transcript from alignment at scaffold_486:26909..32399+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068600 ID=TCONS_00068600|Name=TCONS_00068600|organism=Clytia hemisphaerica|type=transcript|length=5491bp|location=Sequence derived from alignment at scaffold_486:26909..32399+ (Clytia hemisphaerica)
aaacattcaaaatagATCAGTGcatcaaaaatattcaaaacaaataaaat
tggtCAAGTAATTatagaaaaaagtaaaataagaaaaaaatgaaaggtaT
AGAAGTTTTGTCTGGTCATACCTTTTTTGCTCACCTTGTACTGTAGTATA
CACGAAATTTTAggtgatcatttaaaaaagttatccTTAATCGACTTTGG
TAAGTTCAATTGTACCAAATCATTGATGGAATAATTCAACAATACAACTT
TAAGTGGAGAATGTAACAGTGGTTCCACAAACCTtgttttcaatttgaaa
acttGCCAAAAGAATTTATTGTCAACCCCGCTATAAAACACCACTACTTC
ATTTGAACACCAATTCAACTGGACATTTATAACAGAGATATTTGGTCTAC
TGACATTACACATTATCTTTTGTAAAAGATGACCTGTGAAAGGGTCGATC
AAATAAACATCTCGCCTTGCCAGTATCAATAAAGATGTACCAGAAGTCAC
TTGATGATAATATGGCTGCTGGCAACGGAAATCGAAGCTGAGATGTTTTG
GTATGAAATCTGAAACATTAACTTTAGTTATCAAGGACAATGTTTTCTCC
AGGTAATTAATTGTATGAACGTTTATTTTGGTCCGTTCCTCagcaaaatg
aatcaaaatttcACCATGCTTCAAATCATGAGCCCATTCGAAAGGGAGGT
ACATTTCTTTGATATAATGTTTTGCAATAACACTTTGCGTGTGCAAGGAA
TAAACGACTACACCATCTACTAAGAACATGAGTATTTTATCAGCATTGAT
GTTAAAAACAACATCATTCTGGCAAACTCCCATTGACATTGTGTCGATGG
TCAGCACTCTTTTCAAGGATAAACAATTATCTGAAGAGAAAAGAGATCTG
AATATATGAACATCGCGTTTGTGTTCCTTATTTTCTTCGTTGAAGGTTTC
GACCATAAGACTTAAAGTCTTTTCATCCGTTGATAGTTTTATATCAAAGT
CTTTCAGGTAACAGTGCTCCTCTTCTAACTCAAAAATAGTTCCCAGGTCT
CTTCCTGTTCTATCCATGTCGGGgttaaatttaaaatcatcaACTAACTG
ACATAAAGTCAAAGATATAGCTCGCCTGTTTTTATGCTCAActggaaaaa
taacaaaatcatGACTTGCGTTGATGGCACTACTCAATGAATTTACTGGT
GAATAGTAAAAACCTTTGCGACACTTTAAAGTCAGTTTATTGCTATTATC
GATTCCATTGTAAACCCAAACAATGTTTCTGATGAAATGACTTTGACTGG
TCCATTCAGATACTGTAAAAGTGTTATTATTAGTGTTATTATTCTTTTCT
TCGATAACAAAATGGTTTGGGGTAACGTTAACAGTATTTTCTGGTATTAA
TCGAACTCTTGGTAATGAATCATCATTAAAACCAAGCAGTGCAGTTTTCA
TTGCTACAAGATGATTTTTTAATTATATTAAttctaaaagaaattaaaaa
tcacATATCAAAATAATAGCACTGTTTTGGTGAAGCAATTAAGATAAGCT
TCCTGGAGAAGAACCTCGGACaagatttgatttttaaagattcAATGGTC
ACAGACTACAGTATGTAGTACAAACTGCATCATGCACCAATCCAAGAAAA
AGCTTTTGTGGTTGCTGCAAACTAGCATATACAGTAATTTTGGCACAGTC
TCAGGCTTTCAAGATAAATAAAATGCTTTTCCCATTCGTATCACAGCACC
ATTTgttgaaattcaaaatcaacaaaGATTAAACGCGCGTATTCATGACT
CTcattgatttgatattgtagcAAATACTTAGCGATCTAATCTTTTACAC
TCATACTTCAAATacgaagaaatgaaaaaatcaatcGAACTGTCAAACCA
TATATGGGATTTACAACTCAAAGACATCAAGCCGTCTCTAACTTGGTCGG
TAATTGACCACGGCCCGCCATATGTTAATGGGTCAAAGCGATGAAACATT
TGTCTTACATAGAAGTTTCATGTTATAACCTCAGAACTTGACCTTGTTAA
ATAACGGTCCGAATTGATTTCGAAATGTCGCCATAGCAACAAATTTgttc
taaaaaaatttaaatgtcTCCCACCGGACAAAGCataataaatagataaa
taaataaatatattttaatagcctcagtattcacttcattgtttTTAAAC
GCGTTTATATGACAATTTTTTAACACACCTATTATAAATTTTATCACGCC
AATCACCCCATGGTTTCAGcacacttttcaggtgcccccattgagcatgg
tgcccccagcaatttaggtccccttgagaaattgctttgagttaggtacc
ccaattcagccaaaaaaatcttttttgaattgacactttttgttgttttg
tcaTTGGTAAAATCTTAATGATTTTTGGGGTGGtttagtaaaaaaattca
ataatttgaaatattttgaaattttcgatttggaaaatataaccgccccc
cagagcctccatcaagacagctaggtacccttaatgaataggtaacccca
aagaattgcaaggcattagcccccctctactaacctggcctaggtgccct
tcagatttctaAGGGGGGGGGCTGACACCATGCACCcactttttactcat
ttttttctAGCTTTTTAACGTGAATTTTACATTTGATAAATGtggaaaca
tgaaactgaattgaataattaattaatttcttTCGTCAATCGTTGTCAAA
GTAGAAGCATTCAACATTATTTGCGAGGAGCCAGAAATTAGGCAACTGCC
ACGAGAGTAGTTATCATTTTCTTGGTAACAgagttgaaattatttttcat
tatttgatCCAGTGCGTGATAGCTCAAGGTAATATCTGGCTGATGCTCTT
TATCATCTGGATCAATATCATGATTCTCAAGGATAAGAAATTCGTACAGA
TTAAAATAATACAGATCAATTTTTCTTACCAATGCCTCattcaatttgct
ttctttttcaacGCAGTCAATTATTCTAACTCCTTCAAAATCTAACAAGG
TAAAATTTTGCCATCACTATACCACCAAGAACAGGGTGACCAATTTCCAA
AAGATTTGTAACGAATTTTTCTGAAACTTTGTCATAATGAACAACGAACT
TAAATAATGTGTGTCTGAATCTTAATcccaatattttcgaaaatcaaatA
ATATTTATCGCTAGCATCAAATCCTCCAAGAGCATATCTGTCAAATCCAT
CAAGAAGTGTGGCTGGTGATAAAATAACATTGGAGAGGTCAGATCGTACA
GACATTGACTTATTTGATGAAAacattctttcaatttttaaataaatctg
ATCTAATAAAATTTATCTAAAAAGAATAGAATTCGATTCTCATTAGCACT
TAACAAGTATTGTGAAAGTTTCGTTCCCAGGCCTAAAGAGAAcataaata
atgaaaatgaaaaaacaacaaaacaccGAACAAACAGACAAAACTTGaca
attgggctcttccagaaaatgtccgtacatggggggtggtgGATATATTG
TCCGTGGGGTAgcgaaaaattaaattttggggataatgatgcttgtccgg
ggggtaaagcTCGTTGTCTGGGGGGCcgaaagtcactttgtccgggaggt
aaatcactgaaaatcgtTATATCCTcaaccccccatattcaattttttct
agaaaagcccaTATGAATGCTTTTTAACCTCCTTTGAGCGATCTAAAAAT
CAATATATCAATATATACTAAAAAGCGGAAATAACATCTCTAGGGGTTGA
TATTTATGAAGAACCATCAAATACCACAGATTTAAGAGGAATAAACAGTG
CTTaaattgaagtaaaaaaagTAAGGCCAGTACTTTTACTGTGAAGCTGA
CAATTTTGTATTCTTTTGCCATTGGTCATTTTACAATCTCGTGACGCGTT
TGGTTTAGATTCAACCATGATTATTGTACGACTGTAGTCGGAATTGGAGG
TGGAGGATAGAGTGTCCtcggggtaaacttgctctgtttaggggtaattt
agctttgaattttgaatatccagggggtcaactaatgcttgaTCGGGGAC
GGGGGTATTGTGGGGTAGAAACCTGctgtaaatttccaaaaagtgttaaa
tcctccacccccatattcaaattcttCCTGGAAAAGAGCAACCtttcttt
tttgcttctttGTCCTTCGTTTCGAATTTACCCGATTGTTTTATAGATCA
AACCATTTGATTCGTCAATAAATTCCTCAACAGAAACTTCAAACCCCAGA
GTTTCAAAGTAACCAGTGATCCAGTGAATCTTAGCAATCTTCATTTGTTT
CAAGACTTGACGAAATTCAGGAATATTTTGGGGCGTCAGATTCAAGGCTT
CTAAGAAAACTTCCTTAACAGGAAGTTCTTTAAACAAAATCAATTCTTCA
GGTGACAGCATGTGATCTGTCTCATACGCCTCACTGATGGTAACTTGATT
TAATGATTTCATACGTAATAGAGTATCTACGATGTCTCCAATCTTTCCTT
CTTCTCTCACAAAGAAACTAGTGGACATACTCTTGATAGGTAAATCGACA
AGTGATCCAACTTCTGATCTGAATTCAGTTTTAAAATCGCAATCATAAAA
CCTGAATTCTTTAAGATGTCTcatctttttcataactttgaCCATTTCTA
ATAGAATTGGGcaactttcaaaattcaagccTTCACTTtcaatgtaaaca
attttgataTCAAGGGCTACCATCAATTCCAAATGTTTAACAGTATATAA
AGACGTAGATAAATGGTTGTGGTTATATAAATAGACACTGCAATCCCTCA
TGGTTGACAACAACTCAATAAAATCAAGGATATTTCCACTATCCCATTCG
ATACAATCTGTATGCACCTCGGAAATACAAACTTTTGAAGAAAGCAGTTT
AAATTCTTCGAAAGTCAGATAACGTTGAAGATTTTCTCTTTGATAATACC
TCGAATCGTGATCAATAACCAATGATTGAATTTTGATGGAACACAAAATA
TCCAACAATTCTTCAAAGTTCTCCCAGATTTCTAAGGCTTTTGTATGAAC
AATAACAGAAATCTTTAAGAAACGCAAATAAGCTTTGTCTGGTTTAAAAT
GATAATTGAATGCATTGTCAACATGTAAAAGTCTAAGTTGTGGAACCAAC
CCTAAAATCTCAAGCCATTTACAACTGAAATCAGAGGTGTGCAACTCACG
aatagaaaaatttgaaatcttgtgTAGAAATGCAATGTCCTTTGTATTCT
TGGTATATCTTGGTTTTGACCAAAGCCTCATCATTGACAACTGGTGCATC
TTCTTTGAAGTAAGAGCAATATTCTGAGCACTTTTGAGATCTAAGTAAGA
AATCACTAATTTCCAGAGCTCATTTGGCAAATccatttcaacaattttct
tttATCCCTTTTTTGTTTAGTTTCTTACTTTTGCACTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042792XLOC_042792Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068600-exon-scaffold_486-1491911889:26909..27286TCONS_00068600-exon-scaffold_486-1491911889:26909..27286Clytia hemisphaericaexon
TCONS_00068600-exon-scaffold_486-1510915933:26909..27286TCONS_00068600-exon-scaffold_486-1510915933:26909..27286Clytia hemisphaericaexon
TCONS_00068600-exon-scaffold_486-1575043694:26909..27286TCONS_00068600-exon-scaffold_486-1575043694:26909..27286Clytia hemisphaericaexon
TCONS_00068600-exon-scaffold_486-1491911889:31953..32399TCONS_00068600-exon-scaffold_486-1491911889:31953..32399Clytia hemisphaericaexon
TCONS_00068600-exon-scaffold_486-1510915933:31953..32399TCONS_00068600-exon-scaffold_486-1510915933:31953..32399Clytia hemisphaericaexon
TCONS_00068600-exon-scaffold_486-1575043694:31953..32399TCONS_00068600-exon-scaffold_486-1575043694:31953..32399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_486supercontigscaffold_486:26909..32399 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.932295	0.868757	0.357769	0.437805	0.558024	0.549367	0.527398	0.473142	0.552686	0.199337	0.678428	0.354166	0.335962	0.277085	1.15469	0.85638	0.506168	0.985181	0.287783	0.190305	1.30939	1.44962	4.73234	3.25192	0	0	1.17593	0.478313	1.92656	1.49201
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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