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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068600 ID=TCONS_00068600|Name=TCONS_00068600|organism=Clytia hemisphaerica|type=transcript|length=825bp
aaacattcaaaatagATCAGTGcatcaaaaatattcaaaacaaataaaat
tggtCAAGTAATTatagaaaaaagtaaaataagaaaaaaatgaaaggtaT
AGAAGTTTTGTCTGGTCATACCTTTTTTGCTCACCTTGTACTGTAGTATA
CACGAAATTTTAggtgatcatttaaaaaagttatccTTAATCGACTTTGG
TAAGTTCAATTGTACCAAATCATTGATGGAATAATTCAACAATACAACTT
TAAGTGGAGAATGTAACAGTGGTTCCACAAACCTtgttttcaatttgaaa
acttGCCAAAAGAATTTATTGTCAACCCCGCTATAAAACACCACTACTTC
ATTTGAACACCAATTCAACTGGACATTTAAAATATCCAACAATTCTTCAA
AGTTCTCCCAGATTTCTAAGGCTTTTGTATGAACAATAACAGAAATCTTT
AAGAAACGCAAATAAGCTTTGTCTGGTTTAAAATGATAATTGAATGCATT
GTCAACATGTAAAAGTCTAAGTTGTGGAACCAACCCTAAAATCTCAAGCC
ATTTACAACTGAAATCAGAGGTGTGCAACTCACGaatagaaaaatttgaa
atcttgtgTAGAAATGCAATGTCCTTTGTATTCTTGGTATATCTTGGTTT
TGACCAAAGCCTCATCATTGACAACTGGTGCATCTTCTTTGAAGTAAGAG
CAATATTCTGAGCACTTTTGAGATCTAAGTAAGAAATCACTAATTTCCAG
AGCTCATTTGGCAAATccatttcaacaattttcttttATCCCTTTTTTGT
TTAGTTTCTTACTTTTGCACTTAAA Run BLAST on NCBI transcript from alignment at scaffold_486:26909..32399+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068600 ID=TCONS_00068600|Name=TCONS_00068600|organism=Clytia hemisphaerica|type=transcript|length=5491bp|location=Sequence derived from alignment at scaffold_486:26909..32399+ (Clytia hemisphaerica)
aaacattcaaaatagATCAGTGcatcaaaaatattcaaaacaaataaaat
tggtCAAGTAATTatagaaaaaagtaaaataagaaaaaaatgaaaggtaT
AGAAGTTTTGTCTGGTCATACCTTTTTTGCTCACCTTGTACTGTAGTATA
CACGAAATTTTAggtgatcatttaaaaaagttatccTTAATCGACTTTGG
TAAGTTCAATTGTACCAAATCATTGATGGAATAATTCAACAATACAACTT
TAAGTGGAGAATGTAACAGTGGTTCCACAAACCTtgttttcaatttgaaa
acttGCCAAAAGAATTTATTGTCAACCCCGCTATAAAACACCACTACTTC
ATTTGAACACCAATTCAACTGGACATTTATAACAGAGATATTTGGTCTAC
TGACATTACACATTATCTTTTGTAAAAGATGACCTGTGAAAGGGTCGATC
AAATAAACATCTCGCCTTGCCAGTATCAATAAAGATGTACCAGAAGTCAC
TTGATGATAATATGGCTGCTGGCAACGGAAATCGAAGCTGAGATGTTTTG
GTATGAAATCTGAAACATTAACTTTAGTTATCAAGGACAATGTTTTCTCC
AGGTAATTAATTGTATGAACGTTTATTTTGGTCCGTTCCTCagcaaaatg
aatcaaaatttcACCATGCTTCAAATCATGAGCCCATTCGAAAGGGAGGT
ACATTTCTTTGATATAATGTTTTGCAATAACACTTTGCGTGTGCAAGGAA
TAAACGACTACACCATCTACTAAGAACATGAGTATTTTATCAGCATTGAT
GTTAAAAACAACATCATTCTGGCAAACTCCCATTGACATTGTGTCGATGG
TCAGCACTCTTTTCAAGGATAAACAATTATCTGAAGAGAAAAGAGATCTG
AATATATGAACATCGCGTTTGTGTTCCTTATTTTCTTCGTTGAAGGTTTC
GACCATAAGACTTAAAGTCTTTTCATCCGTTGATAGTTTTATATCAAAGT
CTTTCAGGTAACAGTGCTCCTCTTCTAACTCAAAAATAGTTCCCAGGTCT
CTTCCTGTTCTATCCATGTCGGGgttaaatttaaaatcatcaACTAACTG
ACATAAAGTCAAAGATATAGCTCGCCTGTTTTTATGCTCAActggaaaaa
taacaaaatcatGACTTGCGTTGATGGCACTACTCAATGAATTTACTGGT
GAATAGTAAAAACCTTTGCGACACTTTAAAGTCAGTTTATTGCTATTATC
GATTCCATTGTAAACCCAAACAATGTTTCTGATGAAATGACTTTGACTGG
TCCATTCAGATACTGTAAAAGTGTTATTATTAGTGTTATTATTCTTTTCT
TCGATAACAAAATGGTTTGGGGTAACGTTAACAGTATTTTCTGGTATTAA
TCGAACTCTTGGTAATGAATCATCATTAAAACCAAGCAGTGCAGTTTTCA
TTGCTACAAGATGATTTTTTAATTATATTAAttctaaaagaaattaaaaa
tcacATATCAAAATAATAGCACTGTTTTGGTGAAGCAATTAAGATAAGCT
TCCTGGAGAAGAACCTCGGACaagatttgatttttaaagattcAATGGTC
ACAGACTACAGTATGTAGTACAAACTGCATCATGCACCAATCCAAGAAAA
AGCTTTTGTGGTTGCTGCAAACTAGCATATACAGTAATTTTGGCACAGTC
TCAGGCTTTCAAGATAAATAAAATGCTTTTCCCATTCGTATCACAGCACC
ATTTgttgaaattcaaaatcaacaaaGATTAAACGCGCGTATTCATGACT
CTcattgatttgatattgtagcAAATACTTAGCGATCTAATCTTTTACAC
TCATACTTCAAATacgaagaaatgaaaaaatcaatcGAACTGTCAAACCA
TATATGGGATTTACAACTCAAAGACATCAAGCCGTCTCTAACTTGGTCGG
TAATTGACCACGGCCCGCCATATGTTAATGGGTCAAAGCGATGAAACATT
TGTCTTACATAGAAGTTTCATGTTATAACCTCAGAACTTGACCTTGTTAA
ATAACGGTCCGAATTGATTTCGAAATGTCGCCATAGCAACAAATTTgttc
taaaaaaatttaaatgtcTCCCACCGGACAAAGCataataaatagataaa
taaataaatatattttaatagcctcagtattcacttcattgtttTTAAAC
GCGTTTATATGACAATTTTTTAACACACCTATTATAAATTTTATCACGCC
AATCACCCCATGGTTTCAGcacacttttcaggtgcccccattgagcatgg
tgcccccagcaatttaggtccccttgagaaattgctttgagttaggtacc
ccaattcagccaaaaaaatcttttttgaattgacactttttgttgttttg
tcaTTGGTAAAATCTTAATGATTTTTGGGGTGGtttagtaaaaaaattca
ataatttgaaatattttgaaattttcgatttggaaaatataaccgccccc
cagagcctccatcaagacagctaggtacccttaatgaataggtaacccca
aagaattgcaaggcattagcccccctctactaacctggcctaggtgccct
tcagatttctaAGGGGGGGGGCTGACACCATGCACCcactttttactcat
ttttttctAGCTTTTTAACGTGAATTTTACATTTGATAAATGtggaaaca
tgaaactgaattgaataattaattaatttcttTCGTCAATCGTTGTCAAA
GTAGAAGCATTCAACATTATTTGCGAGGAGCCAGAAATTAGGCAACTGCC
ACGAGAGTAGTTATCATTTTCTTGGTAACAgagttgaaattatttttcat
tatttgatCCAGTGCGTGATAGCTCAAGGTAATATCTGGCTGATGCTCTT
TATCATCTGGATCAATATCATGATTCTCAAGGATAAGAAATTCGTACAGA
TTAAAATAATACAGATCAATTTTTCTTACCAATGCCTCattcaatttgct
ttctttttcaacGCAGTCAATTATTCTAACTCCTTCAAAATCTAACAAGG
TAAAATTTTGCCATCACTATACCACCAAGAACAGGGTGACCAATTTCCAA
AAGATTTGTAACGAATTTTTCTGAAACTTTGTCATAATGAACAACGAACT
TAAATAATGTGTGTCTGAATCTTAATcccaatattttcgaaaatcaaatA
ATATTTATCGCTAGCATCAAATCCTCCAAGAGCATATCTGTCAAATCCAT
CAAGAAGTGTGGCTGGTGATAAAATAACATTGGAGAGGTCAGATCGTACA
GACATTGACTTATTTGATGAAAacattctttcaatttttaaataaatctg
ATCTAATAAAATTTATCTAAAAAGAATAGAATTCGATTCTCATTAGCACT
TAACAAGTATTGTGAAAGTTTCGTTCCCAGGCCTAAAGAGAAcataaata
atgaaaatgaaaaaacaacaaaacaccGAACAAACAGACAAAACTTGaca
attgggctcttccagaaaatgtccgtacatggggggtggtgGATATATTG
TCCGTGGGGTAgcgaaaaattaaattttggggataatgatgcttgtccgg
ggggtaaagcTCGTTGTCTGGGGGGCcgaaagtcactttgtccgggaggt
aaatcactgaaaatcgtTATATCCTcaaccccccatattcaattttttct
agaaaagcccaTATGAATGCTTTTTAACCTCCTTTGAGCGATCTAAAAAT
CAATATATCAATATATACTAAAAAGCGGAAATAACATCTCTAGGGGTTGA
TATTTATGAAGAACCATCAAATACCACAGATTTAAGAGGAATAAACAGTG
CTTaaattgaagtaaaaaaagTAAGGCCAGTACTTTTACTGTGAAGCTGA
CAATTTTGTATTCTTTTGCCATTGGTCATTTTACAATCTCGTGACGCGTT
TGGTTTAGATTCAACCATGATTATTGTACGACTGTAGTCGGAATTGGAGG
TGGAGGATAGAGTGTCCtcggggtaaacttgctctgtttaggggtaattt
agctttgaattttgaatatccagggggtcaactaatgcttgaTCGGGGAC
GGGGGTATTGTGGGGTAGAAACCTGctgtaaatttccaaaaagtgttaaa
tcctccacccccatattcaaattcttCCTGGAAAAGAGCAACCtttcttt
tttgcttctttGTCCTTCGTTTCGAATTTACCCGATTGTTTTATAGATCA
AACCATTTGATTCGTCAATAAATTCCTCAACAGAAACTTCAAACCCCAGA
GTTTCAAAGTAACCAGTGATCCAGTGAATCTTAGCAATCTTCATTTGTTT
CAAGACTTGACGAAATTCAGGAATATTTTGGGGCGTCAGATTCAAGGCTT
CTAAGAAAACTTCCTTAACAGGAAGTTCTTTAAACAAAATCAATTCTTCA
GGTGACAGCATGTGATCTGTCTCATACGCCTCACTGATGGTAACTTGATT
TAATGATTTCATACGTAATAGAGTATCTACGATGTCTCCAATCTTTCCTT
CTTCTCTCACAAAGAAACTAGTGGACATACTCTTGATAGGTAAATCGACA
AGTGATCCAACTTCTGATCTGAATTCAGTTTTAAAATCGCAATCATAAAA
CCTGAATTCTTTAAGATGTCTcatctttttcataactttgaCCATTTCTA
ATAGAATTGGGcaactttcaaaattcaagccTTCACTTtcaatgtaaaca
attttgataTCAAGGGCTACCATCAATTCCAAATGTTTAACAGTATATAA
AGACGTAGATAAATGGTTGTGGTTATATAAATAGACACTGCAATCCCTCA
TGGTTGACAACAACTCAATAAAATCAAGGATATTTCCACTATCCCATTCG
ATACAATCTGTATGCACCTCGGAAATACAAACTTTTGAAGAAAGCAGTTT
AAATTCTTCGAAAGTCAGATAACGTTGAAGATTTTCTCTTTGATAATACC
TCGAATCGTGATCAATAACCAATGATTGAATTTTGATGGAACACAAAATA
TCCAACAATTCTTCAAAGTTCTCCCAGATTTCTAAGGCTTTTGTATGAAC
AATAACAGAAATCTTTAAGAAACGCAAATAAGCTTTGTCTGGTTTAAAAT
GATAATTGAATGCATTGTCAACATGTAAAAGTCTAAGTTGTGGAACCAAC
CCTAAAATCTCAAGCCATTTACAACTGAAATCAGAGGTGTGCAACTCACG
aatagaaaaatttgaaatcttgtgTAGAAATGCAATGTCCTTTGTATTCT
TGGTATATCTTGGTTTTGACCAAAGCCTCATCATTGACAACTGGTGCATC
TTCTTTGAAGTAAGAGCAATATTCTGAGCACTTTTGAGATCTAAGTAAGA
AATCACTAATTTCCAGAGCTCATTTGGCAAATccatttcaacaattttct
tttATCCCTTTTTTGTTTAGTTTCTTACTTTTGCACTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068600-exon-scaffold_486-1491911889:26909..27286 | TCONS_00068600-exon-scaffold_486-1491911889:26909..27286 | Clytia hemisphaerica | exon |
| TCONS_00068600-exon-scaffold_486-1510915933:26909..27286 | TCONS_00068600-exon-scaffold_486-1510915933:26909..27286 | Clytia hemisphaerica | exon |
| TCONS_00068600-exon-scaffold_486-1575043694:26909..27286 | TCONS_00068600-exon-scaffold_486-1575043694:26909..27286 | Clytia hemisphaerica | exon |
| TCONS_00068600-exon-scaffold_486-1491911889:31953..32399 | TCONS_00068600-exon-scaffold_486-1491911889:31953..32399 | Clytia hemisphaerica | exon |
| TCONS_00068600-exon-scaffold_486-1510915933:31953..32399 | TCONS_00068600-exon-scaffold_486-1510915933:31953..32399 | Clytia hemisphaerica | exon |
| TCONS_00068600-exon-scaffold_486-1575043694:31953..32399 | TCONS_00068600-exon-scaffold_486-1575043694:31953..32399 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_486 | supercontig | scaffold_486:26909..32399 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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