TCONS_00068601 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068601
Unique NameTCONS_00068601
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1781

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068601 ID=TCONS_00068601|Name=TCONS_00068601|organism=Clytia hemisphaerica|type=transcript|length=1781bp
aTATGAATGCTTTTTAACCTCCTTTGAGCGATCTAAAAATCAATATATCA
ATATATACTAAAAAGCGGAAATAACATCTCTAGGGGTTGATATTTATGAA
GAACCATCAAATACCACAGATTTAAGAGGAATAAACAGTGCTTaaattga
agtaaaaaaagTAAGGCCAGTACTTTTACTGTGAAGCTGACAATTTTGTA
TTCTTTTGCCATTGGTCATTTTACAATCTCGTGACGCGTTTGGTTTAGAT
TCAACCATGATTATTGTACGACTGTAGTCGGAATTGGAGGTGGAGGATAG
AGTGTCCtcggggtaaacttgctctgtttaggggtaatttagctttgaat
tttgaatatccagggggtcaactaatgcttgaTCGGGGACGGGGGTATTG
TGGGGTAGAAACCTGctgtaaatttccaaaaagtgttaaatcctccaccc
ccatattcaaattcttCCTGGAAAAGAGCAACCtttcttttttgcttctt
tGTCCTTCGTTTCGAATTTACCCGATTGTTTTATAGATCAAACCATTTGA
TTCGTCAATAAATTCCTCAACAGAAACTTCAAACCCCAGAGTTTCAAAGT
AACCAGTGATCCAGTGAATCTTAGCAATCTTCATTTGTTTCAAGACTTGA
CGAAATTCAGGAATATTTTGGGGCGTCAGATTCAAGGCTTCTAAGAAAAC
TTCCTTAACAGGAAGTTCTTTAAACAAAATCAATTCTTCAGGTGACAGCA
TGTGATCTGTCTCATACGCCTCACTGATGGTAACTTGATTTAATGATTTC
ATACGTAATAGAGTATCTACGATGTCTCCAATCTTTCCTTCTTCTCTCAC
AAAGAAACTAGTGGACATACTCTTGATAGGTAAATCGACAAGTGATCCAA
CTTCTGATCTGAATTCAGTTTTAAAATCGCAATCATAAAACCTGAATTCT
TTAAGATGTCTcatctttttcataactttgaCCATTTCTAATAGAATTGG
GcaactttcaaaattcaagccTTCACTTtcaatgtaaacaattttgataT
CAAGGGCTACCATCAATTCCAAATGTTTAACAGTATATAAAGACGTAGAT
AAATGGTTGTGGTTATATAAATAGACACTGCAATCCCTCATGGTTGACAA
CAACTCAATAAAATCAAGGATATTTCCACTATCCCATTCGATACAATCTG
TATGCACCTCGGAAATACAAACTTTTGAAGAAAGCAGTTTAAATTCTTCG
AAAGTCAGATAACGTTGAAGATTTTCTCTTTGATAATACCTCGAATCGTG
ATCAATAACCAATGATTGAATTTTGATGGAACACAAAATATCCAACAATT
CTTCAAAGTTCTCCCAGATTTCTAAGGCTTTTGTATGAACAATAACAGAA
ATCTTTAAGAAACGCAAATAAGCTTTGTCTGGTTTAAAATGATAATTGAA
TGCATTGTCAACATGTAAAAGTCTAAGTTGTGGAACCAACCCTAAAATCT
CAAGCCATTTACAACTGAAATCAGAGGTGTGCAACTCACGaatagaaaaa
tttgaaatcttgtgTAGAAATGCAATGTCCTTTGTATTCTTGGTATATCT
TGGTTTTGACCAAAGCCTCATCATTGACAACTGGTGCATCTTCTTTGAAG
TAAGAGCAATATTCTGAGCACTTTTGAGATCTAAGTAAGAAATCACTAAT
TTCCAGAGCTCATTTGGCAAATccatttcaacaattttcttttATCCCTT
TTTTGTTTAGTTTCTTACTTTTGCACTTAAA
Run BLAST on NCBI

transcript from alignment at scaffold_486:30619..32399+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068601 ID=TCONS_00068601|Name=TCONS_00068601|organism=Clytia hemisphaerica|type=transcript|length=1781bp|location=Sequence derived from alignment at scaffold_486:30619..32399+ (Clytia hemisphaerica)
aTATGAATGCTTTTTAACCTCCTTTGAGCGATCTAAAAATCAATATATCA
ATATATACTAAAAAGCGGAAATAACATCTCTAGGGGTTGATATTTATGAA
GAACCATCAAATACCACAGATTTAAGAGGAATAAACAGTGCTTaaattga
agtaaaaaaagTAAGGCCAGTACTTTTACTGTGAAGCTGACAATTTTGTA
TTCTTTTGCCATTGGTCATTTTACAATCTCGTGACGCGTTTGGTTTAGAT
TCAACCATGATTATTGTACGACTGTAGTCGGAATTGGAGGTGGAGGATAG
AGTGTCCtcggggtaaacttgctctgtttaggggtaatttagctttgaat
tttgaatatccagggggtcaactaatgcttgaTCGGGGACGGGGGTATTG
TGGGGTAGAAACCTGctgtaaatttccaaaaagtgttaaatcctccaccc
ccatattcaaattcttCCTGGAAAAGAGCAACCtttcttttttgcttctt
tGTCCTTCGTTTCGAATTTACCCGATTGTTTTATAGATCAAACCATTTGA
TTCGTCAATAAATTCCTCAACAGAAACTTCAAACCCCAGAGTTTCAAAGT
AACCAGTGATCCAGTGAATCTTAGCAATCTTCATTTGTTTCAAGACTTGA
CGAAATTCAGGAATATTTTGGGGCGTCAGATTCAAGGCTTCTAAGAAAAC
TTCCTTAACAGGAAGTTCTTTAAACAAAATCAATTCTTCAGGTGACAGCA
TGTGATCTGTCTCATACGCCTCACTGATGGTAACTTGATTTAATGATTTC
ATACGTAATAGAGTATCTACGATGTCTCCAATCTTTCCTTCTTCTCTCAC
AAAGAAACTAGTGGACATACTCTTGATAGGTAAATCGACAAGTGATCCAA
CTTCTGATCTGAATTCAGTTTTAAAATCGCAATCATAAAACCTGAATTCT
TTAAGATGTCTcatctttttcataactttgaCCATTTCTAATAGAATTGG
GcaactttcaaaattcaagccTTCACTTtcaatgtaaacaattttgataT
CAAGGGCTACCATCAATTCCAAATGTTTAACAGTATATAAAGACGTAGAT
AAATGGTTGTGGTTATATAAATAGACACTGCAATCCCTCATGGTTGACAA
CAACTCAATAAAATCAAGGATATTTCCACTATCCCATTCGATACAATCTG
TATGCACCTCGGAAATACAAACTTTTGAAGAAAGCAGTTTAAATTCTTCG
AAAGTCAGATAACGTTGAAGATTTTCTCTTTGATAATACCTCGAATCGTG
ATCAATAACCAATGATTGAATTTTGATGGAACACAAAATATCCAACAATT
CTTCAAAGTTCTCCCAGATTTCTAAGGCTTTTGTATGAACAATAACAGAA
ATCTTTAAGAAACGCAAATAAGCTTTGTCTGGTTTAAAATGATAATTGAA
TGCATTGTCAACATGTAAAAGTCTAAGTTGTGGAACCAACCCTAAAATCT
CAAGCCATTTACAACTGAAATCAGAGGTGTGCAACTCACGaatagaaaaa
tttgaaatcttgtgTAGAAATGCAATGTCCTTTGTATTCTTGGTATATCT
TGGTTTTGACCAAAGCCTCATCATTGACAACTGGTGCATCTTCTTTGAAG
TAAGAGCAATATTCTGAGCACTTTTGAGATCTAAGTAAGAAATCACTAAT
TTCCAGAGCTCATTTGGCAAATccatttcaacaattttcttttATCCCTT
TTTTGTTTAGTTTCTTACTTTTGCACTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042792XLOC_042792Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068601-exon-scaffold_486-1491911889:30619..32399TCONS_00068601-exon-scaffold_486-1491911889:30619..32399Clytia hemisphaericaexon
TCONS_00068601-exon-scaffold_486-1510915933:30619..32399TCONS_00068601-exon-scaffold_486-1510915933:30619..32399Clytia hemisphaericaexon
TCONS_00068601-exon-scaffold_486-1575043694:30619..32399TCONS_00068601-exon-scaffold_486-1575043694:30619..32399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_486supercontigscaffold_486:30619..32399 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.4904	7.24979	4.00403	3.59935	0.353276	0.235835	0.875218	1.02178	0.420665	0.23617	0.100831	0.531123	0.348242	0.293966	0.655794	0.670896	1.12033	1.2536	0.143971	0.14177	0.660817	0.718173	3.22052	4.0479	0.323127	0.308849	0.719697	0.447523	1.29082	1.09231
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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