TCONS_00068642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068642
Unique NameTCONS_00068642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068642 ID=TCONS_00068642|Name=TCONS_00068642|organism=Clytia hemisphaerica|type=transcript|length=593bp
CTGTCTTTCATTGTTTGCAATTACATAAAGTTTCTTATACCATAGTTTAG
ATTGTGGGTGAAGAATAATATTAACAATGAACGACGTAAGAAAATCAATG
TTTCTGTCACCAGCAGCAACTACagaatacaaaaataaagaattgagCAT
TTCCTTGGGTAATGATTTTCAAGCTATCAATTCCTTTCAAAGGGGATTTG
ACCACACTGGCAAACACTTTTACATTCTCGAAGATATGGATGGTGGAGAT
CGTCTTCGTGTATTTATGGTGTATTTCAATGAACAACAAAATGCTCTCGA
GAAGAGAACTCTAACCATTGATTTCCAAGATATGAATGGTTCAGAATCGG
TCTGGCAGGAACTTGATCCGTATACTGGGAATGTTGTTGTCATTGTGAAG
CATGTTATACTCGATAATGATAATGCAGAGAAATTTATGATAAatattta
tcattattatttcCCTGATGTTTTTGTTGATCATCCGTATAAGGTATTGG
ATTTAGCTATCGAGCCAAGTGAAGCAGATATTGTTTTAAGATTCGATGGT
AAAGACTACGAAAGATGTCAAATTTGGTATGGATTAAGAGAAA
Run BLAST on NCBI

protein sequence of TCONS_00068642-protein

>TCONS_00068642-protein ID=TCONS_00068642-protein|Name=TCONS_00068642-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MNDVRKSMFLSPAATTEYKNKELSISLGNDFQAINSFQRGFDHTGKHFYI
LEDMDGGDRLRVFMVYFNEQQNALEKRTLTIDFQDMNGSESVWQELDPYT
GNVVVIVKHVILDNDNAEKFMINIYHYYFPDVFVDHPYKVLDLAIEPSEA
DIVLRFDGKDYERCQIWYGLRE
Run BLAST on NCBI

transcript from alignment at scaffold_486:4540..5132

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068642 ID=TCONS_00068642|Name=TCONS_00068642|organism=Clytia hemisphaerica|type=transcript|length=593bp|location=Sequence derived from alignment at scaffold_486:4540..5132 (Clytia hemisphaerica)
TTTCTCTTAATCCATACCAAATTTGACATCTTTCGTAGTCTTTACCATCG
AATCTTAAAACAATATCTGCTTCACTTGGCTCGATAGCTAAATCCAATAC
CTTATACGGATGATCAACAAAAACATCAGGgaaataataatgataaatat
TTATCATAAATTTCTCTGCATTATCATTATCGAGTATAACATGCTTCACA
ATGACAACAACATTCCCAGTATACGGATCAAGTTCCTGCCAGACCGATTC
TGAACCATTCATATCTTGGAAATCAATGGTTAGAGTTCTCTTCTCGAGAG
CATTTTGTTGTTCATTGAAATACACCATAAATACACGAAGACGATCTCCA
CCATCCATATCTTCGAGAATGTAAAAGTGTTTGCCAGTGTGGTCAAATCC
CCTTTGAAAGGAATTGATAGCTTGAAAATCATTACCCAAGGAAATGctca
attctttatttttgtattctGTAGTTGCTGCTGGTGACAGAAACATTGAT
TTTCTTACGTCGTTCATTGTTAATATTATTCTTCACCCACAATCTAAACT
ATGGTATAAGAAACTTTATGTAATTGCAAACAATGAAAGACAG

Coding sequence (CDS) from alignment at scaffold_486:4540..5132

>TCONS_00068642 ID=TCONS_00068642|Name=TCONS_00068642|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_486:4540..5132 (Clytia hemisphaerica)
TTCTCTTAATCCATACCAAATTTGACATCTTTCGTAGTCTTTACCATCGA
ATCTTAAAACAATATCTGCTTCACTTGGCTCGATAGCTAAATCCAATACC
TTATACGGATGATCAACAAAAACATCAGGgaaataataatgataaatatT
TATCATAAATTTCTCTGCATTATCATTATCGAGTATAACATGCTTCACAA
TGACAACAACATTCCCAGTATACGGATCAAGTTCCTGCCAGACCGATTCT
GAACCATTCATATCTTGGAAATCAATGGTTAGAGTTCTCTTCTCGAGAGC
ATTTTGTTGTTCATTGAAATACACCATAAATACACGAAGACGATCTCCAC
CATCCATATCTTCGAGAATGTAAAAGTGTTTGCCAGTGTGGTCAAATCCC
CTTTGAAAGGAATTGATAGCTTGAAAATCATTACCCAAGGAAATGctcaa
ttctttatttttgtattctGTAGTTGCTGCTGGTGACAGAAACATTGATT
TTCTTACGTCGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042814XLOC_042814Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068642-proteinTCONS_00068642-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068642-exon-scaffold_486-1491911889:4540..5132TCONS_00068642-exon-scaffold_486-1491911889:4540..5132Clytia hemisphaericaexon
TCONS_00068642-exon-scaffold_486-1510915933:4540..5132TCONS_00068642-exon-scaffold_486-1510915933:4540..5132Clytia hemisphaericaexon
TCONS_00068642-exon-scaffold_486-1575043694:4540..5132TCONS_00068642-exon-scaffold_486-1575043694:4540..5132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_486supercontigscaffold_486:4540..5132 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.55555	2.65795	0.791874	1.29796	1.06958	0.644985	1.68978	1.92533	0.912097	1.6773	1.24288	1.31517	0.331912	0	1.61333	1.65815	1.88206	3.10724	0.807652	0.938362	1.21426	0.395267	2.3788	3.95542	1.01516	0.694319	1.11981	0.483715	0.457371	1.93483
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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