TCONS_00068645 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068645
Unique NameTCONS_00068645
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068645 ID=TCONS_00068645|Name=TCONS_00068645|organism=Clytia hemisphaerica|type=transcript|length=809bp
gttttttcattttcattatttatgTTCTCTTTAGGCCTGGGAACGAAACT
TTCACAATACTTGTTAAGTGCTAATGAGAATCGAATTCTATTCTTTTTAG
ATAAATTTTATTAGATcagatttatttaaaaattgaaagaatgtTTTCAT
CAAATAAGTCAATGTCTGTACGATCTGACCTCTCCAATGTTATTTTATCA
CCAGCCACACTTCTTGATGGATTTGACAGATATGCTCTTGGAGGATTTGA
TGCTAGCGATAAATATTatttgattttcgaaaatattgggATTAAGATTC
AGACACACATTATTTAAGTTCGTTGTTCATTATGACAAAGTTTCAGAAAA
ATTCGTTACAAATCTTTTGGAAATTGGTCACCCTGTTCTTGGTGGTATAG
TGATGGCAAAATTTTACCTTGTTAGATTTTGAAGGAGTTAGAATAATTGA
CTGCgttgaaaaagaaagcaaattgaatGAGGCATTGGTAAGAAAAATTG
ATCTGTATTATTTTAATCTGTACGAATTTCTTATCCTTGAGAATCATGAT
ATTGATCCAGATGATAAAGAGCATCAGCCAGATATTACCTTGAGCTATCA
CGCACTGGatcaaataatgaaaaataatttcaactcTGTTACCAAGAAAA
TGATAACTACTCTCGTGGCAGTTGCCTAATTTCTGGCTCCTCGCAAATAA
TGTTGAATGCTTCTACTTTGACAACGATTGACGAaagaaattaattaatt
attcaattcagtttcatgtttccaCATTTATCAAATGTAAAATTCACGTT
AAAAAGCTa
Run BLAST on NCBI

transcript from alignment at scaffold_486:29566..30374

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068645 ID=TCONS_00068645|Name=TCONS_00068645|organism=Clytia hemisphaerica|type=transcript|length=809bp|location=Sequence derived from alignment at scaffold_486:29566..30374 (Clytia hemisphaerica)
tAGCTTTTTAACGTGAATTTTACATTTGATAAATGtggaaacatgaaact
gaattgaataattaattaatttcttTCGTCAATCGTTGTCAAAGTAGAAG
CATTCAACATTATTTGCGAGGAGCCAGAAATTAGGCAACTGCCACGAGAG
TAGTTATCATTTTCTTGGTAACAgagttgaaattatttttcattatttga
tCCAGTGCGTGATAGCTCAAGGTAATATCTGGCTGATGCTCTTTATCATC
TGGATCAATATCATGATTCTCAAGGATAAGAAATTCGTACAGATTAAAAT
AATACAGATCAATTTTTCTTACCAATGCCTCattcaatttgctttctttt
tcaacGCAGTCAATTATTCTAACTCCTTCAAAATCTAACAAGGTAAAATT
TTGCCATCACTATACCACCAAGAACAGGGTGACCAATTTCCAAAAGATTT
GTAACGAATTTTTCTGAAACTTTGTCATAATGAACAACGAACTTAAATAA
TGTGTGTCTGAATCTTAATcccaatattttcgaaaatcaaatAATATTTA
TCGCTAGCATCAAATCCTCCAAGAGCATATCTGTCAAATCCATCAAGAAG
TGTGGCTGGTGATAAAATAACATTGGAGAGGTCAGATCGTACAGACATTG
ACTTATTTGATGAAAacattctttcaatttttaaataaatctgATCTAAT
AAAATTTATCTAAAAAGAATAGAATTCGATTCTCATTAGCACTTAACAAG
TATTGTGAAAGTTTCGTTCCCAGGCCTAAAGAGAAcataaataatgaaaa
tgaaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042817XLOC_042817Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068645-exon-scaffold_486-1491911889:29566..30374TCONS_00068645-exon-scaffold_486-1491911889:29566..30374Clytia hemisphaericaexon
TCONS_00068645-exon-scaffold_486-1510915933:29566..30374TCONS_00068645-exon-scaffold_486-1510915933:29566..30374Clytia hemisphaericaexon
TCONS_00068645-exon-scaffold_486-1575043694:29566..30374TCONS_00068645-exon-scaffold_486-1575043694:29566..30374Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_486supercontigscaffold_486:29566..30374 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.18259	1.38386	1.20509	0.327498	0	0.0630112	0	0	0	0	0.239625	0	0	0	0.0335757	0.0720638	0	0.0454966	0	0	0.171509	0	0.20339	0.554734	0	0	0	0	0.0656292	0.133732
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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