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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068674 ID=TCONS_00068674|Name=TCONS_00068674|organism=Clytia hemisphaerica|type=transcript|length=2367bp
GTTACTATCTTTGAAGTTAATCTCAATGGTTATCCCATTAGAATGAACAA
TTTTAGTAATACAAAAAAGAACTCAAATCGTTCATCATATTTTAAAAAGT
TCCAATTTCATCTCGCATTTCTCATCCCCATACTATTTGAAGACTTTTGA
AATCagcctcttttttctttttcacatcCAGGGAAGCAGCGGAGCTTCGT
TCAGCGCTAAAGGAAAAAGATCGTTCAACTTTGCTAAGCTCCGACCATTC
AAAGGACAACAGAATAACAAAGGAGAGGGTGAAGGGGACCCATCGGCCAG
CGACGGGGACCAACTACAAAAGACGGAAGATATGATTCTGTCATACGAAT
CAGTTTGCCAAGAAGAGTTGAAATACACACGACCTGTCATTATTTTGGGA
CCACTCAAAGACAGACTGAATGATGATCTAATTCAAGAATTCCCTAATGA
GTTTGGCAGTTGTGTTCCCCACACGACACGTGAACCACGTGAACACGAAG
TTTCAGGACGTGATTATCATTTCGTTGATTCGCGTGAGAAAATGGAACAA
GACATTGCTAACCACTTGTTCATCGAAGCCGGTCAATACAACGAGAACCT
GTATGGTACAAGCGTTAGCTCCGTACGAGAAGTCTCTGAGAAAGGCAAAC
ACTGTATATTGGATGTTAGTGGGTACGCCATCAAGCGTCTACAAGTGGCA
CAATTATATCCTATCGCTGTTTTCATCAAACCAATCTCCGTCGAATGGAT
GCAAGAGATGAACAAACGTCTTTTACTTGAACCCGCTCAAAAGAATTTCG
AACGCGCACAAAAATTAGAACAAGAATTTATCGAATACTTCACTGGTGTT
ATTACTGGCGAGTCTTATGAAGAAATCTATTCTCACGTCAAAGAATTGAT
CGCACAACAAAGCAAACCCGTCGTTTGGATACCAAGCAAAGAGAAATTAT
AAACCAATGTGAGACACATGGTAAGAAAACATATCCCGTATAGTAGTGTG
GAGTATTGGACGAACATACTGGAATAAATGGACGTGGACGTCGGTAGCAT
AGCTTGAGATACGCTAGCTTCTTTTTTTATCATGGCGACGGTGGTTTGGA
AGCTACAGTGAAGTTCACATATAAGGGCTGCCGACAAATTATAAATGGAA
TAGAAGGAAAATGGATGTTGCTATTTGTTGGTTTTAGGTGGATGGGTACT
GGTCTTGATGTTCTTATTACGAACGTTTCAACAAGAGTAACGCCACTGAG
AAGGAGGCCTTTTCGCCTTATTCGGAGTGTCGTATCTGGTTTAATGAGCA
CTCCCCTGAGGAAGTGTTTCTGTTACAAAAGCGTCTGTTACGACACTTGT
TACATACTGACGCTTACTCCCGACGAATACGAAAAACAAAATTGGCTGCG
TTGATGTTCATAATAAAATGAAACGTAAAAAGGACACTAAGGTTGTACTG
AAACACAAGAACTACTGCAGTCCTTATTTCGCATCAAACCAAACAATTTT
TTTTTTCGTTTTCGTTGGAAGTGAAATTCAAGTAGCTGAAAGGTGAAACA
TGATGGAAAATTCATTAAAAAATACGTTGTTTTATCCGTCATCGAATACC
GATATTTAATTTGTCCATAAATTGTATACTAGAAGTGCTTTTACTTAATT
AAATAATTCCCCATTGTTTTTTATACTTGCTTTTAATAAATTTAGTAATT
ATATTATTATTATTGTCTTGTTAGATTTATTTTCCCAAATTATTTTGCCT
CATTTATTTCTTTCAATCCAGCTTGTACTCAGTTTGATTATATTGTAATA
GTGGTTTAATGCACTAAAATGGCTATCTTGATACAAACAAAGTTATAACA
TTAGTCCCTCTGACAGTGGATTTTTTTTTTCTCTATGTAATTCGTACAAA
TTAGATTTTCAAGTAGAGATCTCCAAGTGTACTCGAAGTAATTTCTCTGC
ACCGATTTATATTTTAGGCAATTTTAAATTCTAGGAATTTATCTTATTGA
TGTCTTTCTATCTAGAAGTATacagtttttaaaaaagttttaacttgttt
ttagaattttcttttcttttgaccatAATTATGATTATGAAAATTTAGTC
TTTGTAACGGTGTTGTTTTCTTGGCAAATTTCTCCCAATATTCTATCTTT
ATGCGCTTGTAAAGCGACATTTaagttggaaagatatttcaaagTGATCT
TTTCGTAGCTCATCATGCGACAAATGAATATGAATAATATGTATTTTGTG
TAGAATTTATATAAactattctttcttttttttcattttttgtttgtcaT
CATGTACATATATATTCTAAAGCAAGTTAATGTCAGCGGGCaagaaacat
tttattttgtgtaaaat Run BLAST on NCBI transcript from alignment at scaffold_487:107..3691+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068674 ID=TCONS_00068674|Name=TCONS_00068674|organism=Clytia hemisphaerica|type=transcript|length=3585bp|location=Sequence derived from alignment at scaffold_487:107..3691+ (Clytia hemisphaerica)
GTTACTATCTTTGAAGTTAATCTCAATGGTTATCCCATTAGAATGAACAA
TTTTAGTAATACAAAAAAGAACTCAAATCGTTCATCATATTTTAAAAAGT
TCCAATTTCATCTCGCATTTCTCATCCCCATACTATTTGAAGACTTTTGA
AATCagcctcttttttctttttcacatcCAGGGAAGCAGCGGAGCTTCGT
TCAGCGCTAAAGGAAAAAGATCGTTCAACTTTGCTAAGCTCCGACCATTC
AAAGGACAACAGAATAACAAAGGAGAGGGTGAAGGGGACCCATCGGCCAG
CGACGGGGACCAACTACAAAAGACGGAAGATATGATTCTGTCATACGAAT
CAGTTTGCCAAGAAGAGTTGAAATACACACGACCTGTCATTATTTTGGGA
CCACTCAAAGACAGACTGAATGATGATCTAATTCAAGAATTCCCTAATGA
GTTTGGCAGTTGTGTTCCCCGTAAGTCATTCATTTTATGTCAAGATAGTG
CTGACGTAAACTTCATTCCCGGTTTTAAAGACTAtattttacataagtgt
tcccgtttcatatcaaacacatatttcatatcagggcagtgtctgcctat
tgttatattatgcttatataagcaaaaaaatgtttttctttccctctttc
tgaccaatcttgctccgcattcgtgtcaattcaatgtgaaaaagcttgtg
aattaaaattaatgagtaagcaaacgattaTTACATAACAGCTTTTTTTA
TATTATCTGTAAAAGATCTCCTCCTAAAATGCACATGGTCTTCGTGATGA
ATCATGAAGTCTCAGGGTTAGTTATATATAAATTCGTGTTagttaaatga
aaaaaacaaacttttaagaTTGTTGGGACCAGCTGCATACCTTACTTGCA
ATAGTTCTGATTAAAAAGAATCGTTTCGTCTGTAAAATAGCTTtcttttt
tgtaagcaaaacTTCTTTCTAACTGTTTACCTTATCTTTTTGACAGACAC
GACACGTGAACCACGTGAACACGAAGTTTCAGGACGTGATTATCATTTCG
TTGATTCGCGTGAGAAAATGGAACAAGACATTGCTAACCACTTGTTCATC
GAAGCCGGTCAATACAACGAGAACCTGTATGGTACAAGCGTTAGCTCCGT
ACGAGAAGTCTCTGAGAAAGTAAGTAGTAACAAGCTTTTGTCCTTCTCAA
AGTTTTGTGTCgtcatattcatgatatgcaccattgtaatgtcttccacg
gacccaacagctgattggttgaaagtgacgtAAAATCATTCAATACGTCA
CTTTCAACCAATCAGCTGTTGGGTCCGTGGAAGACATTGCAATGGTGCAC
ATCATGAATATAAAGTTGTGAGAGGTTATCTCCCACGCAGATCTAGATGC
CCAAGCTTCATCATAATTTCTATGCTAGAAAGTGTCTGAAGAAGCTTATA
ATTGTTTTGTTCGCCACTAAACTAACTCATTGAAAAATCTAATGGTCCGC
AAGATTATGAGCTTCATTTTCTATTTTCTGTATCAATAAAGACATACACA
ACTCTTTCAGGGCAAACACTGTATATTGGATGTTAGTGGGTACGCCATCA
AGCGTCTACAAGTGGCACAATTATATCCTATCGCTGTTTTCATCAAACCA
ATCTCCGTCGAATGGATGCAAGAGATGAACAAACGTCTTTTACTTGAACC
CGCTCAAAAGAATTTCGAACGCGCACAAAAATTAGAACAAGAATTTATCG
AATACTTCACTGGTACGAACTTCATTTTTAGCTACAATATTTTCTCGTCT
CTGTTGAGAGTAGTATAAGGGGTGTTACTCATTAAACAGGGGTTCGTTAC
CGTTTCTTATTCAAGTTCCTTTAACAGGCTCATTGATTGCTTACTCGTTT
GACCGTTTTGAAAAGTTGATATTCCTGAAAGAAATTACTATTACTATACA
TTTTCAAAGTTCCTCGGTATTCTCCTCTCCTCGAAATACGAAAAGAGGAT
TTTCCCGTAAACTTAGATCTGACGGCAGAGAGATGATGATGGTAATTTTC
TTTTAATTAACAGGTGTTATTACTGGCGAGTCTTATGAAGAAATCTATTC
TCACGTCAAAGAATTGATCGCACAACAAAGCAAACCCGTCGTTTGGATAC
CAAGCAAAGAGAAATTATAAACCAATGTGAGACACATGGTAAGAAAACAT
ATCCCGTATAGTAGTGTGGAGTATTGGACGAACATACTGGAATAAATGGA
CGTGGACGTCGGTAGCATAGCTTGAGATACGCTAGCTTCTTTTTTTATCA
TGGCGACGGTGGTTTGGAAGCTACAGTGAAGTTCACATATAAGGGCTGCC
GACAAATTATAAATGGAATAGAAGGAAAATGGATGTTGCTATTTGTTGGT
TTTAGGTGGATGGGTACTGGTCTTGATGTTCTTATTACGAACGTTTCAAC
AAGAGTAACGCCACTGAGAAGGAGGCCTTTTCGCCTTATTCGGAGTGTCG
TATCTGGTTTAATGAGCACTCCCCTGAGGAAGTGTTTCTGTTACAAAAGC
GTCTGTTACGACACTTGTTACATACTGACGCTTACTCCCGACGAATACGA
AAAACAAAATTGGCTGCGTTGATGTTCATAATAAAATGAAACGTAAAAAG
GACACTAAGGTTGTACTGAAACACAAGAACTACTGCAGTCCTTATTTCGC
ATCAAACCAAACAATTTTTTTTTTCGTTTTCGTTGGAAGTGAAATTCAAG
TAGCTGAAAGGTGAAACATGATGGAAAATTCATTAAAAAATACGTTGTTT
TATCCGTCATCGAATACCGATATTTAATTTGTCCATAAATTGTATACTAG
AAGTGCTTTTACTTAATTAAATAATTCCCCATTGTTTTTTATACTTGCTT
TTAATAAATTTAGTAATTATATTATTATTATTGTCTTGTTAGATTTATTT
TCCCAAATTATTTTGCCTCATTTATTTCTTTCAATCCAGCTTGTACTCAG
TTTGATTATATTGTAATAGTGGTTTAATGCACTAAAATGGCTATCTTGAT
ACAAACAAAGTTATAACATTAGTCCCTCTGACAGTGGATTTTTTTTTTCT
CTATGTAATTCGTACAAATTAGATTTTCAAGTAGAGATCTCCAAGTGTAC
TCGAAGTAATTTCTCTGCACCGATTTATATTTTAGGCAATTTTAAATTCT
AGGAATTTATCTTATTGATGTCTTTCTATCTAGAAGTATacagtttttaa
aaaagttttaacttgtttttagaattttcttttcttttgaccatAATTAT
GATTATGAAAATTTAGTCTTTGTAACGGTGTTGTTTTCTTGGCAAATTTC
TCCCAATATTCTATCTTTATGCGCTTGTAAAGCGACATTTaagttggaaa
gatatttcaaagTGATCTTTTCGTAGCTCATCATGCGACAAATGAATATG
AATAATATGTATTTTGTGTAGAATTTATATAAactattctttcttttttt
tcattttttgtttgtcaTCATGTACATATATATTCTAAAGCAAGTTAATG
TCAGCGGGCaagaaacattttattttgtgtaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068674-exon-scaffold_487-1491911889:107..576 | TCONS_00068674-exon-scaffold_487-1491911889:107..576 | Clytia hemisphaerica | exon |
| TCONS_00068674-exon-scaffold_487-1510915933:107..576 | TCONS_00068674-exon-scaffold_487-1510915933:107..576 | Clytia hemisphaerica | exon |
| TCONS_00068674-exon-scaffold_487-1575043694:107..576 | TCONS_00068674-exon-scaffold_487-1575043694:107..576 | Clytia hemisphaerica | exon |
| TCONS_00068674-exon-scaffold_487-1491911889:1103..1275 | TCONS_00068674-exon-scaffold_487-1491911889:1103..1275 | Clytia hemisphaerica | exon |
| TCONS_00068674-exon-scaffold_487-1510915933:1103..1275 | TCONS_00068674-exon-scaffold_487-1510915933:1103..1275 | Clytia hemisphaerica | exon |
| TCONS_00068674-exon-scaffold_487-1575043694:1103..1275 | TCONS_00068674-exon-scaffold_487-1575043694:1103..1275 | Clytia hemisphaerica | exon |
| TCONS_00068674-exon-scaffold_487-1491911889:1667..1868 | TCONS_00068674-exon-scaffold_487-1491911889:1667..1868 | Clytia hemisphaerica | exon |
| TCONS_00068674-exon-scaffold_487-1510915933:1667..1868 | TCONS_00068674-exon-scaffold_487-1510915933:1667..1868 | Clytia hemisphaerica | exon |
| TCONS_00068674-exon-scaffold_487-1575043694:1667..1868 | TCONS_00068674-exon-scaffold_487-1575043694:1667..1868 | Clytia hemisphaerica | exon |
| TCONS_00068674-exon-scaffold_487-1491911889:2170..3691 | TCONS_00068674-exon-scaffold_487-1491911889:2170..3691 | Clytia hemisphaerica | exon |
| TCONS_00068674-exon-scaffold_487-1510915933:2170..3691 | TCONS_00068674-exon-scaffold_487-1510915933:2170..3691 | Clytia hemisphaerica | exon |
| TCONS_00068674-exon-scaffold_487-1575043694:2170..3691 | TCONS_00068674-exon-scaffold_487-1575043694:2170..3691 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_487 | supercontig | scaffold_487:107..3691 + |
Blast
BLAST of TCONS_00068674 vs. Swiss-Prot (Human)
Match: DLG2 (Disks large homolog 2 OS=Homo sapiens GN=DLG2 PE=1 SV=3) HSP 1 Score: 310.842 bits (795), Expect = 4.137e-92 Identity = 155/242 (64.05%), Postives = 190/242 (78.51%), Query Frame = 2
Query: 224 FNFAKLRPFKGQQNNKGEGEGDPSASDGDQLQKTEDMILSYESVCQEELKYTRPVIILGPLKDRLNDDLIQEFPNEFGSCVPHTTREPREHEVSGRDYHFVDSREKMEQDIANHLFIEAGQYNENLYGTSVSSVREVSEKGKHCILDVSGYAIKRLQVAQLYPIAVFIKPISVEWMQEMNKRLLLEPAQKNFERAQKLEQEFIEYFTGVITGESYEEIYSHVKELIAQQSKPVVWIPSKEKL 949
F F++ PF NK + E + S D + ED+ILSYE V ++E+ YTRPVIILGP+KDR+NDDLI EFP++FGSCVPHTTR R++EV GRDYHFV SRE+ME+DI H FIEAGQYN+NLYGTSV SVR V+E+GKHCILDVSG AIKRLQVAQLYPIA+FIKP S+E + EMNKRL E A+K ++RA KLEQEF EYFT ++ G++ E+IY+ K +I +QS P +WIPSKEKL
Sbjct: 636 FIFSRKFPF---YKNKEQSEQETS----DPERGQEDLILSYEPVTRQEINYTRPVIILGPMKDRINDDLISEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVISREQMEKDIQEHKFIEAGQYNDNLYGTSVQSVRFVAERGKHCILDVSGNAIKRLQVAQLYPIAIFIKPRSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEFGEYFTAIVQGDTLEDIYNQCKLVIEEQSGPFIWIPSKEKL 870
The following BLAST results are available for this feature:
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