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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068696 ID=TCONS_00068696|Name=TCONS_00068696|organism=Clytia hemisphaerica|type=transcript|length=2389bp
tcagcattcgatctcccaggtctagcgcaaatagaaaaggggatagactc
cctcactcccggctccgccgacagccaccagatgaatatacaaaaaatta
agaacaacccAGCCTGAGCCAGTATTTactagttcttacaaaaaaagtgt
GTAAAGGAGTTGTCATGGCTACCCACAATATCGGTCAAAACATAttaatt
atttcgtagaggtcgatagacctgtgaaatataattctatgaataaaaat
atattgacaattttggtttattcctcgtttttagcattTTAGCAAAGTTC
GGGCAAGAACAGCGGCTTTCGGGCTTTTTGTTAGATTTAAAAGAATTTAA
TCAATTTGGgtggggtttatagacttccaggccatgttggaccattcttg
aacttttggatcttaGGTTTCATgataaaactcagagttaaaactctact
tttccaacctaagttagagcgcttccaaattgattgtggttataagattt
tcgtgggaatttcccctttttctcaaatattatggcctGTATTGCAGCGG
GTCTACCGGTTTAGCGAGGTGACGGATTTGTCCGACCAAAAATTGGGAAT
CGACCATAAAAGTGGGAAATTTTTAACCCTCTTTGGACACTTGGAATGTT
TTTGTCCCAAACTTTGGTTCAAGAAGCATTTAAAGAAGGGAATTTCGACT
CTAGAACCAAATCAAATAGTGGGTTGGCTcttgtactcttaggtgccaaa
taaacggggggcctaattaccggggggttggaaaatggaccttaaaaaaa
acctaaaaagggtcaaaatagactagatttaggctttttagagtaaaaca
aggaactttccttttggtagctgggaattttttcaaaaattaataaacgg
ggggacctaataaAGTCCGGGggacaaaaaatcgaaaaattaacaagtgg
ggtggcccgtttatttggcacctaagagtaatcgTTATAGTCAGAAATAT
TAAAAAAGGAACATTTaggaagaaattctttattttgaaaattcttagaG
GGTGACAATTTTGATAATACTAATAAGCTgtaaataatatattttttata
tcattCAGTTGCAATTACGTTCCATAgttcaaaaaaggtttttttcctTC
ATAAAACCTCAATGTctccattttttatttgaatcagCATAATTTGATGG
TGAAGCGAAGGTTTTTGCTCATCTTTAACTTTAATCCATAGAAGCATCAT
AAAAATGAGCGTCGTGTAAAGATTGTCTTTTTCTTTCGCTTCGAAGTGAA
GTGTCATTGTCAATCAAAGTTGTGGTGTAATTTCGATTAAAGTTCGCATC
ATTATTCTTGAAACCTTTTTTGGTCCTTCTTAAGTATTTCAAGAGTTCGG
GAAAATTCAACGTACAAGTAGTTGTTTGCATTGACGTTGTTTTGATATTG
GAACTCAAAATAACAGTATTCCAAAGTACTGATCTGCCTTTCCCTTCTTT
TTAGCGTTTATTGAATTCCTACCACAAGCAAAGTGATTCAACTCACCTTC
ACAATATTTTAAAGAGCCATTCTGGAAACTCTTACTTTGATCACCACTTG
ACGCCATACTCTAAATAACAAATCATTCAAGAGTTGTTTGTACATCTCAC
CCCGCGTAAAGATGATCGATTCAACCCGCAATGTTTCTCTTGCCGACAGA
TAAAGCAGTGGGGATCAGGAACTGTGTGATTTCGATTCAATCCGAGTTCA
GATATCAACCGATTGAGTACGCGTTCATCAACACGGTCAATTCCTCTCTG
AGGTTGAGGTCTGTTTGTTGATGATATCGTGGAAGAGGATGACAAAACAC
TGCTTTTACCACCTCGTTTAGAGCTCAGTGATTGCAAAGACATCTTGATA
GATTCTGTTAGTAAGCTCCTCTCGATAGATATATAACTTTGTATGTGATG
AAAATGAAGTAGTTTCCGAAAACAAGAAGCCTGATTACCGGTCCTGAATA
AAGCTCTTTGTCCTCTTGACTCAAAAAGTAACAACAAGTCTATAGTAGCA
CACTGCTGGTACGAGTTCACGATAAAACTAATTAGATATATCCAATACCA
AGCAAAGTAGAATCGACTTTCGAAAGTGCAGTTAGTTTCCTTCCAAAATC
ACTCACGAATTTTTTCCTCTGTAAGTTAATATCCGGTCAAAAAACCCTTC
CTTGATAGATGAAGTCCCTTCCTTTGAAGGCTAATTCGAATCTGGAGTTC
TTATCTAAATCACAACTGCTTATAAAGCCAATCCAACCCACCATTTAGTG
AAAAATAACAGATCAGCTATAAACAAGTGAGCGTACTTACTTacgaagaa
agaaagaaaaaaagttgtgTGTGTCAGACTCTCGTGAAT Run BLAST on NCBI transcript from alignment at scaffold_487:99591..102087+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068696 ID=TCONS_00068696|Name=TCONS_00068696|organism=Clytia hemisphaerica|type=transcript|length=2497bp|location=Sequence derived from alignment at scaffold_487:99591..102087+ (Clytia hemisphaerica)
tcagcattcgatctcccaggtctagcgcaaatagaaaaggggatagactc
cctcactcccggctccgccgacagccaccagatgaatatacaaaaaatta
agaacaacccAGCCTGAGCCAGTATTTactagttcttacaaaaaaagtgt
GTAAAGGAGTTGTCATGGCTACCCACAATATCGGTCAAAACATAttaatt
atttcgtagaggtcgatagacctgtgaaatataattctatgaataaaaat
atattgacaattttggtttattcctcgtttttagcattTTAGCAAAGTTC
GGGCAAGAACAGCGGCTTTCGGGCTTTTTGTTAGATTTAAAAGAATTTAA
TCAATTTGGgtggggtttatagacttccaggccatgttggaccattcttg
aacttttggatcttaGGTTTCATgataaaactcagagttaaaactctact
tttccaacctaagttagagcgcttccaaattgattgtggttataagattt
tcgtgggaatttcccctttttctcaaatattatggcctGTATTGCAGCGG
GTCTACCGGTTTAGCGAGGTGACGGATTTGTCCGACCAAAAATTGGGAAT
CGACCATAAAAGTGGGAAATTTTTAACCCTCTTTGGACACTTGGAATGTT
TTTGTCCCAAACTTTGGTTCAAGAAGCATTTAAAGAAGGGAATTTCGACT
CTAGAACCAAATCAAATAGTGGGTTGGCTcttgtactcttaggtgccaaa
taaacggggggcctaattaccggggggttggaaaatggaccttaaaaaaa
acctaaaaagggtcaaaatagactagatttaggctttttagagtaaaaca
aggaactttccttttggtagctgggaattttttcaaaaattaataaacgg
ggggacctaataaAGTCCGGGggacaaaaaatcgaaaaattaacaagtgg
ggtggcccgtttatttggcacctaagagtaatcgTTATAGTCAGAAATAT
TAAAAAAGGAACATTTaggaagaaattctttattttgaaaattcttagaG
GGTGACAATTTTGATAATACTAATAAGCTgtaaataatatattttttata
tcattCAGTTGCAATTACGTTCCATAgttcaaaaaaggtttttttcctTC
ATAAAACCTCAATGTctccattttttatttgaatcagCATAATTTGATGG
TGAAGCGAAGGTTTTTGCTCATCTTTAACTTTAATCCATAGAAGCATCAT
AAAAATGAGCGTCGTGTAAAGATTGTCTTTTTCTTTCGCTTCGAAGTGAA
GTGTCATTGTCAATCAAAGTTGTGGTGTAATTTCGATTAAAGTTCGCATC
ATTATTCTTGAAACCTTTTTTGGTCCTTCTTAAGTATTTCAAGAGTTCGG
GAAAATTCAACGTACAAGTAGTTGTTTGCATTGACGTTGTTTTGATATTG
GAACTCAAAATAACAGTATTCCAAAGTACTGATCTGCCTTTCCCTTCTTT
TTAGCGTTTATTGAATTCCTACCACAAGCAAAGTGATTCAACTCACCTTC
ACAATATTTTAAAGAGCCATTCTGGAAACTCTTACTTTGATCACCACTTG
ACGCCATACTCTAAATAACAAATCATTCAAGAATTGTTTGTATGTCTCAC
CCCGCGTAAAGATGATCGATTCAATCCGCAATGTTTCTCTTGCCGACAGA
TGAAGCAGCNAACCATTCTGTAAATAACAAACATTCAAGAGTTGTTTGTA
CATCTCACCCCGCGTAAAGATGATCGATTCAACCCGCAATGTTTCTCTTG
CCGACAGATAAAGCAGTGGGGATCAGGAACTGTGTGATTTCGATTCAATC
CGAGTTCAGATATCAACCGATTGAGTACGCGTTCATCAACACGGTCAATT
CCTCTCTGAGGTTGAGGTCTGTTTGTTGATGATATCGTGGAAGAGGATGA
CAAAACACTGCTTTTACCACCTCGTTTAGAGCTCAGTGATTGCAAAGACA
TCTTGATAGATTCTGTTAGTAAGCTCCTCTCGATAGATATATAACTTTGT
ATGTGATGAAAATGAAGTAGTTTCCGAAAACAAGAAGCCTGATTACCGGT
CCTGAATAAAGCTCTTTGTCCTCTTGACTCAAAAAGTAACAACAAGTCTA
TAGTAGCACACTGCTGGTACGAGTTCACGATAAAACTAATTAGATATATC
CAATACCAAGCAAAGTAGAATCGACTTTCGAAAGTGCAGTTAGTTTCCTT
CCAAAATCACTCACGAATTTTTTCCTCTGTAAGTTAATATCCGGTCAAAA
AACCCTTCCTTGATAGATGAAGTCCCTTCCTTTGAAGGCTAATTCGAATC
TGGAGTTCTTATCTAAATCACAACTGCTTATAAAGCCAATCCAACCCACC
ATTTAGTGAAAAATAACAGATCAGCTATAAACAAGTGAGCGTACTTACTT
acgaagaaagaaagaaaaaaagttgtgTGTGTCAGACTCTCGTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068696-exon-scaffold_487-1491911889:99591..101214 | TCONS_00068696-exon-scaffold_487-1491911889:99591..101214 | Clytia hemisphaerica | exon |
| TCONS_00068696-exon-scaffold_487-1510915933:99591..101214 | TCONS_00068696-exon-scaffold_487-1510915933:99591..101214 | Clytia hemisphaerica | exon |
| TCONS_00068696-exon-scaffold_487-1575043694:99591..101214 | TCONS_00068696-exon-scaffold_487-1575043694:99591..101214 | Clytia hemisphaerica | exon |
| TCONS_00068696-exon-scaffold_487-1491911889:101323..102087 | TCONS_00068696-exon-scaffold_487-1491911889:101323..102087 | Clytia hemisphaerica | exon |
| TCONS_00068696-exon-scaffold_487-1510915933:101323..102087 | TCONS_00068696-exon-scaffold_487-1510915933:101323..102087 | Clytia hemisphaerica | exon |
| TCONS_00068696-exon-scaffold_487-1575043694:101323..102087 | TCONS_00068696-exon-scaffold_487-1575043694:101323..102087 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_487 | supercontig | scaffold_487:99591..102087 + |
Blast
The following BLAST results are available for this feature:
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