TCONS_00068701 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068701
Unique NameTCONS_00068701
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068701 ID=TCONS_00068701|Name=TCONS_00068701|organism=Clytia hemisphaerica|type=transcript|length=2389bp
ATTCACGAGAGTCTGACACAcacaactttttttctttctttcttcgtAAG
TAAGTACGCTCACTTGTTTATAGCTGATCTGTTATTTTTCACTAAATGGT
GGGTTGGATTGGCTTTATAAGCAGTTGTGATTTAGATAAGAACTCCAGAT
TCGAATTAGCCTTCAAAGGAAGGGACTTCATCTATCAAGGAAGGGTTTTT
TGACCGGATATTAACTTACAGAGGAAAAAATTCGTGAGTGATTTTGGAAG
GAAACTAACTGCACTTTCGAAAGTCGATTCTACTTTGCTTGGTATTGGAT
ATATCTAATTAGTTTTATCGTGAACTCGTACCAGCAGTGTGCTACTATAG
ACTTGTTGTTACTTTTTGAGTCAAGAGGACAAAGAGCTTTATTCAGGACC
GGTAATCAGGCTTCTTGTTTTCGGAAACTACTTCATTTTCATCACATACA
AAGTTATATATCTATCGAGAGGAGCTTACTAACAGAATCTATCAAGATGT
CTTTGCAATCACTGAGCTCTAAACGAGGTGGTAAAAGCAGTGTTTTGTCA
TCCTCTTCCACGATATCATCAACAAACAGACCTCAACCTCAGAGAGGAAT
TGACCGTGTTGATGAACGCGTACTCAATCGGTTGATATCTGAACTCGGAT
TGAATCGAAATCACACAGTTCCTGATCCCCACTGCTTTATCTGTCGGCAA
GAGAAACATTGCGGATTGAATCGATCATCTTTACGCGGGGTGAGACATAC
AAACAATTCTTGAATGATTTGTTATTTAGAGTATGGCGTCAAGTGGTGAT
CAAAGTAAGAGTTTCCAGAATGGCTCTTTAAAATATTGTGAAGGTGAGTT
GAATCACTTTGCTTGTGGTAGGAATTCAATAAACGCTAAAAAGAAGGGAA
AGGCAGATCAGTACTTTGGAATACTGTTATTTTGAGTTCCAATATCAAAA
CAACGTCAATGCAAACAACTACTTGTACGTTGAATTTTCCCGAACTCTTG
AAATACTTAAGAAGGACCAAAAAAGGTTTCAAGAATAATGATGCGAACTT
TAATCGAAATTACACCACAACTTTGATTGACAATGACACTTCACTTCGAA
GCGAAAGAAAAAGACAATCTTTACACGACGCTCATTTTTATGATGCTTCT
ATGGATTAAAGTTAAAGATGAGCAAAAACCTTCGCTTCACCATCAAATTA
TGctgattcaaataaaaaatggagACATTGAGGTTTTATGAaggaaaaaa
accttttttgaacTATGGAACGTAATTGCAACTGaatgatataaaaaata
tattatttacAGCTTATTAGTATTATCAAAATTGTCACCCtctaagaatt
ttcaaaataaagaatttcttcctAAATGTTCCTTTTTTAATATTTCTGAC
TATAAcgattactcttaggtgccaaataaacgggccaccccacttgttaa
tttttcgattttttgtccCCCGGACTttattaggtccccccgtttattaa
tttttgaaaaaattcccagctaccaaaaggaaagttccttgttttactct
aaaaagcctaaatctagtctattttgaccctttttaggttttttttaagg
tccattttccaaccccccggtaattaggccccccgtttatttggcaccta
agagtacaagAGCCAACCCACTATTTGATTTGGTTCTAGAGTCGAAATTC
CCTTCTTTAAATGCTTCTTGAACCAAAGTTTGGGACAAAAACATTCCAAG
TGTCCAAAGAGGGTTAAAAATTTCCCACTTTTATGGTCGATTCCCAATTT
TTGGTCGGACAAATCCGTCACCTCGCTAAACCGGTAGACCCGCTGCAATA
Caggccataatatttgagaaaaaggggaaattcccacgaaaatcttataa
ccacaatcaatttggaagcgctctaacttaggttggaaaagtagagtttt
aactctgagttttatcATGAAACCtaagatccaaaagttcaagaatggtc
caacatggcctggaagtctataaaccccacCCAAATTGATTAAATTCTTT
TAAATCTAACAAAAAGCCCGAAAGCCGCTGTTCTTGCCCGAACTTTGCTA
Aaatgctaaaaacgaggaataaaccaaaattgtcaatatatttttattca
tagaattatatttcacaggtctatcgacctctacgaaataattaaTATGT
TTTGACCGATATTGTGGGTAGCCATGACAACTCCTTTACacacttttttt
gtaagaactagtAAATACTGGCTCAGGCTgggttgttcttaattttttgt
atattcatctggtggctgtcggcggagccgggagtgagggagtctatccc
cttttctatttgcgctagacctgggagatcgaatgctga
Run BLAST on NCBI

transcript from alignment at scaffold_487:99591..102087-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068701 ID=TCONS_00068701|Name=TCONS_00068701|organism=Clytia hemisphaerica|type=transcript|length=2497bp|location=Sequence derived from alignment at scaffold_487:99591..102087- (Clytia hemisphaerica)
ATTCACGAGAGTCTGACACACACAACTTTTTTTCTTTCTTTCTTCGTAAG
TAAGTACGCTCACTTGTTTATAGCTGATCTGTTATTTTTCACTAAATGGT
GGGTTGGATTGGCTTTATAAGCAGTTGTGATTTAGATAAGAACTCCAGAT
TCGAATTAGCCTTCAAAGGAAGGGACTTCATCTATCAAGGAAGGGTTTTT
TGACCGGATATTAACTTACAGAGGAAAAAATTCGTGAGTGATTTTGGAAG
GAAACTAACTGCACTTTCGAAAGTCGATTCTACTTTGCTTGGTATTGGAT
ATATCTAATTAGTTTTATCGTGAACTCGTACCAGCAGTGTGCTACTATAG
ACTTGTTGTTACTTTTTGAGTCAAGAGGACAAAGAGCTTTATTCAGGACC
GGTAATCAGGCTTCTTGTTTTCGGAAACTACTTCATTTTCATCACATACA
AAGTTATATATCTATCGAGAGGAGCTTACTAACAGAATCTATCAAGATGT
CTTTGCAATCACTGAGCTCTAAACGAGGTGGTAAAAGCAGTGTTTTGTCA
TCCTCTTCCACGATATCATCAACAAACAGACCTCAACCTCAGAGAGGAAT
TGACCGTGTTGATGAACGCGTACTCAATCGGTTGATATCTGAACTCGGAT
TGAATCGAAATCACACAGTTCCTGATCCCCACTGCTTTATCTGTCGGCAA
GAGAAACATTGCGGGTTGAATCGATCATCTTTACGCGGGGTGAGATGTAC
AAACAACTCTTGAATGTTTGTTATTTACAGAATGGTTNGCTGCTTCATCT
GTCGGCAAGAGAAACATTGCGGATTGAATCGATCATCTTTACGCGGGGTG
AGACATACAAACAATTCTTGAATGATTTGTTATTTAGAGTATGGCGTCAA
GTGGTGATCAAAGTAAGAGTTTCCAGAATGGCTCTTTAAAATATTGTGAA
GGTGAGTTGAATCACTTTGCTTGTGGTAGGAATTCAATAAACGCTAAAAA
GAAGGGAAAGGCAGATCAGTACTTTGGAATACTGTTATTTTGAGTTCCAA
TATCAAAACAACGTCAATGCAAACAACTACTTGTACGTTGAATTTTCCCG
AACTCTTGAAATACTTAAGAAGGACCAAAAAAGGTTTCAAGAATAATGAT
GCGAACTTTAATCGAAATTACACCACAACTTTGATTGACAATGACACTTC
ACTTCGAAGCGAAAGAAAAAGACAATCTTTACACGACGCTCATTTTTATG
ATGCTTCTATGGATTAAAGTTAAAGATGAGCAAAAACCTTCGCTTCACCA
TCAAATTATGCTGATTCAAATAAAAAATGGAGACATTGAGGTTTTATGAA
GGAAAAAAACCTTTTTTGAACTATGGAACGTAATTGCAACTGAATGATAT
AAAAAATATATTATTTACAGCTTATTAGTATTATCAAAATTGTCACCCTC
TAAGAATTTTCAAAATAAAGAATTTCTTCCTAAATGTTCCTTTTTTAATA
TTTCTGACTATAACGATTACTCTTAGGTGCCAAATAAACGGGCCACCCCA
CTTGTTAATTTTTCGATTTTTTGTCCCCCGGACTTTATTAGGTCCCCCCG
TTTATTAATTTTTGAAAAAATTCCCAGCTACCAAAAGGAAAGTTCCTTGT
TTTACTCTAAAAAGCCTAAATCTAGTCTATTTTGACCCTTTTTAGGTTTT
TTTTAAGGTCCATTTTCCAACCCCCCGGTAATTAGGCCCCCCGTTTATTT
GGCACCTAAGAGTACAAGAGCCAACCCACTATTTGATTTGGTTCTAGAGT
CGAAATTCCCTTCTTTAAATGCTTCTTGAACCAAAGTTTGGGACAAAAAC
ATTCCAAGTGTCCAAAGAGGGTTAAAAATTTCCCACTTTTATGGTCGATT
CCCAATTTTTGGTCGGACAAATCCGTCACCTCGCTAAACCGGTAGACCCG
CTGCAATACAGGCCATAATATTTGAGAAAAAGGGGAAATTCCCACGAAAA
TCTTATAACCACAATCAATTTGGAAGCGCTCTAACTTAGGTTGGAAAAGT
AGAGTTTTAACTCTGAGTTTTATCATGAAACCTAAGATCCAAAAGTTCAA
GAATGGTCCAACATGGCCTGGAAGTCTATAAACCCCACCCAAATTGATTA
AATTCTTTTAAATCTAACAAAAAGCCCGAAAGCCGCTGTTCTTGCCCGAA
CTTTGCTAAAATGCTAAAAACGAGGAATAAACCAAAATTGTCAATATATT
TTTATTCATAGAATTATATTTCACAGGTCTATCGACCTCTACGAAATAAT
TAATATGTTTTGACCGATATTGTGGGTAGCCATGACAACTCCTTTACACA
CTTTTTTTGTAAGAACTAGTAAATACTGGCTCAGGCTGGGTTGTTCTTAA
TTTTTTGTATATTCATCTGGTGGCTGTCGGCGGAGCCGGGAGTGAGGGAG
TCTATCCCCTTTTCTATTTGCGCTAGACCTGGGAGATCGAATGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042858XLOC_042858Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068701-exon-scaffold_487-1575043694:101381..102087TCONS_00068701-exon-scaffold_487-1575043694:101381..102087Clytia hemisphaericaexon
TCONS_00068701-exon-scaffold_487-1575043694:99591..101272TCONS_00068701-exon-scaffold_487-1575043694:99591..101272Clytia hemisphaericaexon
TCONS_00068701-exon-scaffold_487-1510915933:101381..102087TCONS_00068701-exon-scaffold_487-1510915933:101381..102087Clytia hemisphaericaexon
TCONS_00068701-exon-scaffold_487-1510915933:99591..101272TCONS_00068701-exon-scaffold_487-1510915933:99591..101272Clytia hemisphaericaexon
TCONS_00068701-exon-scaffold_487-1491911889:101381..102087TCONS_00068701-exon-scaffold_487-1491911889:101381..102087Clytia hemisphaericaexon
TCONS_00068701-exon-scaffold_487-1491911889:99591..101272TCONS_00068701-exon-scaffold_487-1491911889:99591..101272Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_487supercontigscaffold_487:99591..102087 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.157649	0.140646	0.330328	0	0.221067	0.427623	0.0853621	0.127337	0.841051	0.707791	0	0	0	0	0	0	0	0	0	0	1.11076	0.888981	0	0	0.138321	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top