TCONS_00068709 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068709
Unique NameTCONS_00068709
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length625

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068709 ID=TCONS_00068709|Name=TCONS_00068709|organism=Clytia hemisphaerica|type=transcript|length=625bp
CATCAATGCAACGAGCAGATAGATGTTCATAATTTCTGCTTAGGCTAAAG
GTGACAGAGAGCTTTGTTTTTTAGCTGCGAGTAACTATTTTATCAATAGA
GCTTACACGTTAATTGGaccaaagttttattttttgagaacCATCTGAGA
TTAACAAGGAGTTTCCACGATTAAGCGATACGTTAAAGAATACTCAAGGA
GAAATGAAAATGTTATTGACAAATGTGATGATGTTAGCGACAACAATTTT
GGTGACGACAGCATGGAACCCTTGTCAAGATAATATTTGGCGTTGCAACA
ACTATCACCAACCTAAAGGTCTGAGATACGTCAAACGTGCGTGTAAAGGG
TACGTCAAAATATATTGCCGTAATTTATGTTCATCAAAATGTTGGCAACA
TATGGCAAAGAAAGAACCgacaactacaacaacaacgaccacaaCGACTA
CCCCTACGACTTCCACGACAAGAGCTAGAACGTGTTTCGATAAAAGCAAC
GCCTGCAACCGATACACAAATTATTGTCGAACAAGTCTTTGGATGAAGAG
AAATTGTCAACAGACATGTGGCTTTTGCAATGGGGGaacgacaacgacca
ctccaacgacaacaacgaccactcc
Run BLAST on NCBI

protein sequence of TCONS_00068709-protein

>TCONS_00068709-protein ID=TCONS_00068709-protein|Name=TCONS_00068709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MKMLLTNVMMLATTILVTTAWNPCQDNIWRCNNYHQPKGLRYVKRACKGY
VKIYCRNLCSSKCWQHMAKKEPTTTTTTTTTTTPTTSTTRARTCFDKSNA
CNRYTNYCRTSLWMKRNCQQTCGFCNGGTTTTTPTTTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_488:7010..9631-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068709 ID=TCONS_00068709|Name=TCONS_00068709|organism=Clytia hemisphaerica|type=transcript|length=2622bp|location=Sequence derived from alignment at scaffold_488:7010..9631- (Clytia hemisphaerica)
CATCAATGCAACGAGCAGATAGATGTTCATAATTTCTGCTTAGGCTAAAG
GTGACAGAGAGCTTTGTTTTTTAGCTGCGAGTAACTATTTTATCAATAGA
GCTTACACGTTAATTGGACCAAAGTTTTATTTTTTGAGAACCATCTGAGA
TTAACAAGGAGTTTCCACGATTAAGCGATACGTTAAAGAATACTCAAGGA
GAAATGAAAATGTTATTGACAAATGTGATGATGTTAGCGACAACAATTTT
GGGTAAGTCTAATTTCGCAGCCTCTAAAAACGATTATCGATTTTGTAGCC
AGCCATTTGAACCGGGCACGTTTCCGTAGAAGACGTTACATCATGAATAT
CATCAAGTAGCTAGTAGTCTGGCAGAAATAAAAGTTGACCTGGAAAAAAA
TTCCGCGTAAACTTTCTTGGTATCGTTGGAAGCAAAATTTTACGAGGTTT
AACATACTCAGAGCCTCACGTTGAGGCCCTTGGGGGAAAATTGGTGAAAT
AAAACACTTAGGGCCCATTTTCGATATAAAATGCCTTGAAAAGTGCTATC
CTTCCAATGGTAGGTGTCTTTCAAAACACTCAAATATGTATACCCCTGTC
TCAAAAATCTGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGTATCTATTTT
GGGGCGGAGAAGTACACTTCAGTCTTGATTTTACCAAAAGTTTTCCCCAA
GGGCCTCATCATGAGGCTCCGAGTATGATAATCTACATAAAATTTCGCTT
CCAACGGTACCAAGAAAGTTTATGCGGAATTTTTTTCTACGTTCACCCCT
GTTTTATTGTATTTCGGCCAGAATATAGGAAGAGTAGTCAAAGAGGATGT
TATCGTCCGTTTTAGAGGGTCTGTAACCGCGGGAAAATATATAAGTGTAG
AGTCAGGGCGTCAGGGCGGTTTACGGGAAAAAAGTAGCGGTAGAGTTTGA
AACAAACACCTCCGCCACTGCTTACTCCGCCCGAATTTATCACGCCTCCT
AAACTATTTCCTTTTTAGTGATCTCGTGTAGACGGTAGGATCGTCTAGGG
TAGTCATTGCGCTTACAAGATACAACTTACTCTGTGTTCAAAGCAGAACG
GAGCACATTGGCAAGTCGAGAACAGTGATCGCTCAATGAGAACATTCATT
AGATTTTATAAAGATGTACATCCTTTTCTTTCTTTACAACAGTGACGACA
GCATGGAACCCTTGTCAAGATAATATTTGGCGTTGCAACAACTATCACCA
ACCTAAAGGTCTGAGATACGTCAAACGTGCGTGTAAAGGGTACGTCAAAA
TATATTGCCGTAATTTATGTTCATCAAAATGTTGGCAACATATGGCAAAG
AAAGAACCGACAACTACAACAACAACGACCACAACGACTACCCCTACGAC
TTCCACGACAAGAGCTAGTAGGTTAATTTACTCTATTATCAAACTGCATT
TTTATTTTAGGTTAGGTTAACGAGATTTTACAGTAAAAATAGTATCCATG
ATTGTATTCCACTGGAACTTAGTTGGAATGTGGTAGGATTCGAATAAAAG
AAGTTGGAATTATGGATACACTGTATTAGCTTTAAAATTATGCTAATTTT
CAGTTCCTGAAGCTTATAAACGTTTTTATGTTATGCGAACCCAGAAGGCT
TTAAAATACGTCCAGCTGACGCTCTGTAATTCAAATTAAAAGGAACTTTC
ACTGAATATGGGAGTGTATCGAATAGTATGTATGATATGATATATATGCA
TCGTGTATGAGAGTGTCAATTTTTCGCTTCAACGATTAAAGACTAAGTTG
TATTTCAATAGATTCCGGCTCAATTCAATTCCGGTCGTGAACGTGACTGA
CTGAATGCTCTATTCTTCTTCTAGGAACGTGTTTCGATAAAAGCAACGCC
TGCAACCGATACACAAATTATTGTCGAACAAGTCTTTGGATGAAGAGAAA
TTGTCAACAGACATGTGGCTTTTGCAATGGGGGAACGACAACGACCACTC
CAACGACAACAACGACCACTCC

Coding sequence (CDS) from alignment at scaffold_488:7010..9631-

>TCONS_00068709 ID=TCONS_00068709|Name=TCONS_00068709|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at scaffold_488:7010..9631- (Clytia hemisphaerica)
GAACGTGTTTCGATAAAAGCAACGCCTGCAACCGATACACAAATTATTGT
CGAACAAGTCTTTGGATGAAGAGAAATTGTCAACAGACATGTGGCTTTTG
CAATGGGGGAACGACAACGACCACTCCAACGACAACAACGACCACTTGAC
GACAGCATGGAACCCTTGTCAAGATAATATTTGGCGTTGCAACAACTATC
ACCAACCTAAAGGTCTGAGATACGTCAAACGTGCGTGTAAAGGGTACGTC
AAAATATATTGCCGTAATTTATGTTCATCAAAATGTTGGCAACATATGGC
AAAGAAAGAACCGACAACTACAACAACAACGACCACAACGACTACCCCTA
CGACTTCCACGACAAGAGCTAATGAAAATGTTATTGACAAATGTGATGAT
GTTAGCGACAACAATTTTGGGAACGTGTTTCGATAAAAGCAACGCCTGCA
ACCGATACACAAATTATTGTCGAACAAGTCTTTGGATGAAGAGAAATTGT
CAACAGACATGTGGCTTTTGCAATGGGGGAACGACAACGACCACTCCAAC
GACAACAACGACCACTTGACGACAGCATGGAACCCTTGTCAAGATAATAT
TTGGCGTTGCAACAACTATCACCAACCTAAAGGTCTGAGATACGTCAAAC
GTGCGTGTAAAGGGTACGTCAAAATATATTGCCGTAATTTATGTTCATCA
AAATGTTGGCAACATATGGCAAAGAAAGAACCGACAACTACAACAACAAC
GACCACAACGACTACCCCTACGACTTCCACGACAAGAGCTAATGAAAATG
TTATTGACAAATGTGATGATGTTAGCGACAACAATTTTGGGAACGTGTTT
CGATAAAAGCAACGCCTGCAACCGATACACAAATTATTGTCGAACAAGTC
TTTGGATGAAGAGAAATTGTCAACAGACATGTGGCTTTTGCAATGGGGGA
ACGACAACGACCACTCCAACGACAACAACGACCACTTGACGACAGCATGG
AACCCTTGTCAAGATAATATTTGGCGTTGCAACAACTATCACCAACCTAA
AGGTCTGAGATACGTCAAACGTGCGTGTAAAGGGTACGTCAAAATATATT
GCCGTAATTTATGTTCATCAAAATGTTGGCAACATATGGCAAAGAAAGAA
CCGACAACTACAACAACAACGACCACAACGACTACCCCTACGACTTCCAC
GACAAGAGCTAATGAAAATGTTATTGACAAATGTGATGATGTTAGCGACA
ACAATTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042866XLOC_042866Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068709-proteinTCONS_00068709-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068709-exon-scaffold_488-1575043694:9380..9631TCONS_00068709-exon-scaffold_488-1575043694:9380..9631Clytia hemisphaericaexon
TCONS_00068709-exon-scaffold_488-1575043694:7615..7839TCONS_00068709-exon-scaffold_488-1575043694:7615..7839Clytia hemisphaericaexon
TCONS_00068709-exon-scaffold_488-1575043694:7010..7157TCONS_00068709-exon-scaffold_488-1575043694:7010..7157Clytia hemisphaericaexon
TCONS_00068709-exon-scaffold_488-1510915933:9380..9631TCONS_00068709-exon-scaffold_488-1510915933:9380..9631Clytia hemisphaericaexon
TCONS_00068709-exon-scaffold_488-1510915933:7615..7839TCONS_00068709-exon-scaffold_488-1510915933:7615..7839Clytia hemisphaericaexon
TCONS_00068709-exon-scaffold_488-1510915933:7010..7157TCONS_00068709-exon-scaffold_488-1510915933:7010..7157Clytia hemisphaericaexon
TCONS_00068709-exon-scaffold_488-1491911889:9380..9631TCONS_00068709-exon-scaffold_488-1491911889:9380..9631Clytia hemisphaericaexon
TCONS_00068709-exon-scaffold_488-1491911889:7615..7839TCONS_00068709-exon-scaffold_488-1491911889:7615..7839Clytia hemisphaericaexon
TCONS_00068709-exon-scaffold_488-1491911889:7010..7157TCONS_00068709-exon-scaffold_488-1491911889:7010..7157Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_488supercontigscaffold_488:7010..9631 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.085283	0	0	0	0	0	0	0	0	0.0890181	0	0	1.81501	0.0589033	6.10174	1.29923	0.320108	0.0656201	0.0906578	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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