TCONS_00068727 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068727
Unique NameTCONS_00068727
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068727 ID=TCONS_00068727|Name=TCONS_00068727|organism=Clytia hemisphaerica|type=transcript|length=274bp
ATTGTTGAGGTTTGGAATGCTGttaacccttacagtgcatctaaAAGATC
TTGAAAATCCTACCCATAAGGTCGACAGATGCCGTAGGTCAGACCATCCC
CCagggatttttttaaatgaccaaaattttgctcacgtTATAATTAATAA
AAAAGTCCGAAATGAGTCAGAGCAAATTCTGTGTTAAGGTCAATACACTT
CACACTTGTCAATATTATTAAAAAGTCAATATGCAAAAATTGTTACTATA
AATAGATCATAAATGTTATTGAGC
Run BLAST on NCBI

transcript from alignment at scaffold_488:55287..55560

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068727 ID=TCONS_00068727|Name=TCONS_00068727|organism=Clytia hemisphaerica|type=transcript|length=274bp|location=Sequence derived from alignment at scaffold_488:55287..55560 (Clytia hemisphaerica)
GCTCAATAACATTTATGATCTATTTATAGTAACAATTTTTGCATATTGAC
TTTTTAATAATATTGACAAGTGTGAAGTGTATTGACCTTAACACAGAATT
TGCTCTGACTCATTTCGGACTTTTTTATTAATTATAacgtgagcaaaatt
ttggtcatttaaaaaaatccctGGGGGATGGTCTGACCTACGGCATCTGT
CGACCTTATGGGTAGGATTTTCAAGATCTTttagatgcactgtaagggtt
aaCAGCATTCCAAACCTCAACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042869XLOC_042869Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068727-exon-scaffold_488-1491911889:55287..55560TCONS_00068727-exon-scaffold_488-1491911889:55287..55560Clytia hemisphaericaexon
TCONS_00068727-exon-scaffold_488-1510915933:55287..55560TCONS_00068727-exon-scaffold_488-1510915933:55287..55560Clytia hemisphaericaexon
TCONS_00068727-exon-scaffold_488-1575043694:55287..55560TCONS_00068727-exon-scaffold_488-1575043694:55287..55560Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_488supercontigscaffold_488:55287..55560 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07175	0	1.21349	1.18721	1.44531	0.571053	0	0.644988	1.80628	2.23738	2.71456	1.42756	0.712787	0	0.608575	0	0.804558	0.412323	3.98753	0.596094	1.03623	2.27446	0	0	0.575345	5.13481	0.73479	1.56838	1.18956	1.21197
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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