|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068783 ID=TCONS_00068783|Name=TCONS_00068783|organism=Clytia hemisphaerica|type=transcript|length=985bp
ATCAAAATCAATATGTAtactttgaaattattttatacTCTCTTTTATAT
CCTTTACACTATCTTATAAGTTTAcgtaagaaaattttgaaaagtagtGG
GTTGAGCTTCACAACCGTTATAACATATAAGCTAGAAAATGACAGAAATC
AAGAACAAAATTTTCACAGGCCAAGCAACCAATGGAGTAAAAGATTACTC
AGAACTCAGTAAGATTGTACAAGAAACGTTTTTCGATTATTTGGTCAAAG
AcgtcaaaatcgaaaatggaTGGAAGGTTTTAGATATCGGATGTGGCACT
GGAAACAATAGTTTCAAATTATCACAAATGGTCGGAGAGCAAGGCAAAAT
TGTTGCTATTGATCCTATCAAAGATCGAATAACTGAAGCCAATTCTAGTT
ATAGCTCTCCAAATCTACATTTCTATGAGGGTTCAGCAAAGGATGTTACC
AAATTTGGAAGTgattttgatttggttgttgCAGCTACAGTCATACACTG
GATACCACCGCAAGAAAGACAAGAAGTGTTCCAAGGGATTATGCAAACTA
TGAAAGAAGGCGCTCAATTTATATTCAACATGACAAAGAAGGATACTTTC
AACATGATACCTATCTtggccaaaatcaaaacaaatcctTACAAGGGCGG
AAACTACTGGCCTGTACCAGAGATCAAAGATATAGAGCAATTAGCCAGCA
ATTCTGGTTATAGAGATGTCCAGGTTAAGGAACAAGAAATGGTGCAACGA
TTACCCTCTCTCGATCAATATCTGAGATGGGCTGCTTCTTCTTTTCACAC
ACGAGATTATGACCAAACATTGAAGGAGTTGAGAGATGTTTGTCAGAATG
AAGATGTATCATGCCTTTATGATAAAGATGGACATTTagtttataaacaa
aaatatttctttgccTATTGTAGAAAATGAATTTAATTCAGTCCTCGATA
CCTGGCATAttcaattcaaataaaaaatttatatt Run BLAST on NCBI protein sequence of TCONS_00068783-protein >TCONS_00068783-protein ID=TCONS_00068783-protein|Name=TCONS_00068783-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MTEIKNKIFTGQATNGVKDYSELSKIVQETFFDYLVKDVKIENGWKVLDI
GCGTGNNSFKLSQMVGEQGKIVAIDPIKDRITEANSSYSSPNLHFYEGSA
KDVTKFGSDFDLVVAATVIHWIPPQERQEVFQGIMQTMKEGAQFIFNMTK
KDTFNMIPILAKIKTNPYKGGNYWPVPEIKDIEQLASNSGYRDVQVKEQE
MVQRLPSLDQYLRWAASSFHTRDYDQTLKELRDVCQNEDVSCLYDKDGHL
VYKQKYFFAYCRK Run BLAST on NCBI transcript from alignment at scaffold_49:398842..399892+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068783 ID=TCONS_00068783|Name=TCONS_00068783|organism=Clytia hemisphaerica|type=transcript|length=1051bp|location=Sequence derived from alignment at scaffold_49:398842..399892+ (Clytia hemisphaerica)
ATCAAAATCAATATGTAtactttgaaattattttatacTCTCTTTTATAT
CCTTTACACTATCTTATAAGTTTAcgtaagaaaattttgaaaagtagtGG
GTTGAGCTTCACAACCGTTATAACATATAAGCTAGAAAATGACAGAAATC
AAGAACAAAATTTTCACAGGCCAAGCAACCAATGGAGTAAAAGATTACTC
AGAACTCAGTAAGATTGTACAAGAAACGTTTTTCGATTATTTGGTCAAAG
AcgtcaaaatcgaaaatggaTGGAAGGTTTTAGATATCGGATGTGGCACT
NATTATTTGGTCAAAGACGTCAAGATTGAAAAAGGATGGAAGGTTTTAGA
TATCGGATGTGGCACTGGAAACAATAGTTTCAAATTATCACAAATGGTCG
GAGAGCAAGGCAAAATTGTTGCTATTGATCCTATCAAAGATCGAATAACT
GAAGCCAATTCTAGTTATAGCTCTCCAAATCTACATTTCTATGAGGGTTC
AGCAAAGGATGTTACCAAATTTGGAAGTgattttgatttggttgttgCAG
CTACAGTCATACACTGGATACCACCGCAAGAAAGACAAGAAGTGTTCCAA
GGGATTATGCAAACTATGAAAGAAGGCGCTCAATTTATATTCAACATGAC
AAAGAAGGATACTTTCAACATGATACCTATCTtggccaaaatcaaaacaa
atcctTACAAGGGCGGAAACTACTGGCCTGTACCAGAGATCAAAGATATA
GAGCAATTAGCCAGCAATTCTGGTTATAGAGATGTCCAGGTTAAGGAACA
AGAAATGGTGCAACGATTACCCTCTCTCGATCAATATCTGAGATGGGCTG
CTTCTTCTTTTCACACACGAGATTATGACCAAACATTGAAGGAGTTGAGA
GATGTTTGTCAGAATGAAGATGTATCATGCCTTTATGATAAAGATGGACA
TTTagtttataaacaaaaatatttctttgccTATTGTAGAAAATGAATTT
AATTCAGTCCTCGATACCTGGCATAttcaattcaaataaaaaatttatat
t Coding sequence (CDS) from alignment at scaffold_49:398842..399892+ >TCONS_00068783 ID=TCONS_00068783|Name=TCONS_00068783|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at scaffold_49:398842..399892+ (Clytia hemisphaerica)
ATGACAGAAATCAAGAACAAAATTTTCACAGGCCAAGCAACCAATGGAGT
AAAAGATTACTCAGAACTCAGTAAGATTGTACAAGAAACGTTTTTCGATT
ATTTGGTCAAAGAcgtcaaaatcgaaaatggaTGGAAGGTTTTAGATATC
GGATGTGGCACTGGAAACAATAGTTTCAAATTATCACAAATGGTCGGAGA
GCAAGGCAAAATTGTTGCTATTGATCCTATCAAAGATCGAATAACTGAAG
CCAATTCTAGTTATAGCTCTCCAAATCTACATTTCTATGAGGGTTCAGCA
AAGGATGTTACCAAATTTGGAAGTgattttgatttggttgttgCAGCTAC
AGTCATACACTGGATACCACCGCAAGAAAGACAAGAAGTGTTCCAAGGGA
TTATGCAAACTATGAAAGAAGGCGCTCAATTTATATTCAACATGACAAAG
AAGGATACTTTCAACATGATACCTATCTtggccaaaatcaaaacaaatcc
tTACAAGGGCGGAAACTACTGGCCTGTACCAGAGATCAAAGATATAGAGC
AATTAGCCAGCAATTCTGGTTATAGAGATGTCCAGGTTAAGGAACAAGAA
ATGGTGCAACGATTACCCTCTCTCGATCAATATCTGAGATGGGCTGCTTC
TTCTTTTCACACACGAGATTATGACCAAACATTGAAGGAGTTGAGAGATG
TTTGTCAGAATGAAGATGTATCATGCCTTTATGATAAAGATGGACATTTa
gtttataaacaaaaatatttctttgccTATTGTAGAAAATGAATGACAGA
AATCAAGAACAAAATTTTCACAGGCCAAGCAACCAATGGAGTAAAAGATT
ACTCAGAACTCAGTAAGATTGTACAAGAAACGTTTTTCGATTATTTGGTC
AAAGAcgtcaaaatcgaaaatggaTGGAAGGTTTTAGATATCGGATGTGG
CACTGGAAACAATAGTTTCAAATTATCACAAATGGTCGGAGAGCAAGGCA
AAATTGTTGCTATTGATCCTATCAAAGATCGAATAACTGAAGCCAATTCT
AGTTATAGCTCTCCAAATCTACATTTCTATGAGGGTTCAGCAAAGGATGT
TACCAAATTTGGAAGTgattttgatttggttgttgCAGCTACAGTCATAC
ACTGGATACCACCGCAAGAAAGACAAGAAGTGTTCCAAGGGATTATGCAA
ACTATGAAAGAAGGCGCTCAATTTATATTCAACATGACAAAGAAGGATAC
TTTCAACATGATACCTATCTtggccaaaatcaaaacaaatcctTACAAGG
GCGGAAACTACTGGCCTGTACCAGAGATCAAAGATATAGAGCAATTAGCC
AGCAATTCTGGTTATAGAGATGTCCAGGTTAAGGAACAAGAAATGGTGCA
ACGATTACCCTCTCTCGATCAATATCTGAGATGGGCTGCTTCTTCTTTTC
ACACACGAGATTATGACCAAACATTGAAGGAGTTGAGAGATGTTTGTCAG
AATGAAGATGTATCATGCCTTTATGATAAAGATGGACATTTagtttataa
acaaaaatatttctttgccTATTGTAGAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068783-exon-scaffold_49-1491911889:398842..399117 | TCONS_00068783-exon-scaffold_49-1491911889:398842..399117 | Clytia hemisphaerica | exon |
| TCONS_00068783-exon-scaffold_49-1510915933:398842..399117 | TCONS_00068783-exon-scaffold_49-1510915933:398842..399117 | Clytia hemisphaerica | exon |
| TCONS_00068783-exon-scaffold_49-1575043694:398842..399117 | TCONS_00068783-exon-scaffold_49-1575043694:398842..399117 | Clytia hemisphaerica | exon |
| TCONS_00068783-exon-scaffold_49-1491911889:399184..399892 | TCONS_00068783-exon-scaffold_49-1491911889:399184..399892 | Clytia hemisphaerica | exon |
| TCONS_00068783-exon-scaffold_49-1510915933:399184..399892 | TCONS_00068783-exon-scaffold_49-1510915933:399184..399892 | Clytia hemisphaerica | exon |
| TCONS_00068783-exon-scaffold_49-1575043694:399184..399892 | TCONS_00068783-exon-scaffold_49-1575043694:399184..399892 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:398842..399892 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029063 | SAM-dependent_MTases |
Blast
The following BLAST results are available for this feature:
|
