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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068785 ID=TCONS_00068785|Name=TCONS_00068785|organism=Clytia hemisphaerica|type=transcript|length=896bp
ATTTTATATtagtttcttttgtttgttGATTCTTGGGGGTCCTTTATTGA
TTGGTCTGCAACTATGGGGGACGTTCTTGAAATTGGTGATCGACTTCTTA
TCAGCATAGACGATGATGATTATCTTGAAGACAGCGTTGAAACAAAAACT
ACCTTAAAGGAGAAGGGAAAACAAGATAATATCAACGATTTAAAAGCTAC
CAAAAACGAATCAGATATTGAAGAAACTTCAAAAGAAGATATCAATGACT
CAAGTGAAGAAACGGACAGTGCAACAGAAATCGAAGACATAATAAAGGAA
GCTGTAGATAGAAATAAGGACGAGGAAAAAGTTGTAAATGAAGAAGGTAC
AAAATTGAACGAGAAAAAGACTCGCAAAAAGTCTAGGAGAGTTTGGAAAA
CAAGCGAGCAACGGATGTACCTCACTTATTTCTATAACAACGAATCGCAA
TATccaagtaaaaaagaaaaattacagcTAAGTAATGATTTACAAATATC
TACCAAACAGGTTAACACGTGGTTTCATAATCGACGCGCAGCTGATCGTA
AAAAGGCTAAAGAGGAACTGAGTCTAGTCACTATGGTTCGTATTGAACGT
TGGGAGAATCTGTACGGTATGATTGCCCCGAATAAACGGACAAAGAGAAA
GAGTAGCGAGAAAACGTCGTAATAGGGTTTTGATACTATTTTTTGAAGTA
GATTTTGgaaattatagaaaaaatttagtttttgttaACACTTTTAGGGT
TTTGATATTATTTTTTGAAGTAGATTTTGgaaattatagaaaaaatttag
tttttgttaACACTTTTAGGGtcttgatattattttttgaagtagatttt
ggaaattatagaaaaaatttggtttttgttAACACTTTTAGGTAAA Run BLAST on NCBI protein sequence of TCONS_00068785-protein >TCONS_00068785-protein ID=TCONS_00068785-protein|Name=TCONS_00068785-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MGDVLEIGDRLLISIDDDDYLEDSVETKTTLKEKGKQDNINDLKATKNES
DIEETSKEDINDSSEETDSATEIEDIIKEAVDRNKDEEKVVNEEGTKLNE
KKTRKKSRRVWKTSEQRMYLTYFYNNESQYPSKKEKLQLSNDLQISTKQV
NTWFHNRRAADRKKAKEELSLVTMVRIERWENLYGMIAPNKRTKRKSSEK
TS Run BLAST on NCBI transcript from alignment at scaffold_49:412255..413787+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068785 ID=TCONS_00068785|Name=TCONS_00068785|organism=Clytia hemisphaerica|type=transcript|length=1533bp|location=Sequence derived from alignment at scaffold_49:412255..413787+ (Clytia hemisphaerica)
ATTTTATATtagtttcttttgtttgttGATTCTTGGGGGTCCTTTATTGA
TTGGTCTGCAACTATGGGGGACGTTCTTGAAATTGGTGATCGACTTCTTA
TCAGCATAGACGATGATGATTATCTTGAAGACAGCGTTGAAACAAAAACT
ACCTTAAAGGAGAAGGGAAAACAAGGTATAAACTTCATAGCTAAATTTAG
ACCCAAGAAAAAGATCCTGATAAAATATGTTAGTTTATTTAAAGTCCTAA
ATCAAACTTAATAATTATTTTACAAACAGGGTCCAAACTCAACCACACCT
GCCTTAGCAGTgtgtactttacagaccagattttGGTTGGTTGTACATAA
ATCCGGGCTAAGTAACACCTCTCCTCTCTACCTCTCTGACCCAGAGAAAT
CTAACAGAGGGTGGCGAAAAAGTAAAACTTCAACAACTTCCTCCACTTGT
TTTCCTAGAATtcatttaaatgtttttatttcgattttaacCATAACTTT
TTATGGGCTAAAAGACCATAACTATTCCAGTTTTGATCGGAgttaaagaa
tttcaataaattttgatcggGTTTGGTTCACGACGGGCCTAAAATTAGAC
AAATTTTAGAAATCTTTTTCCCGGATTATCCACAGGGGTGGATCAGATCG
TGTCACTACAGGGGGTGTGATATACTGTCTGACTCAGTCAACTCAGATTT
TTCCCGAAGCTGAAATTTTTGGATAAGGTCCTAACGACTTTTTGCGATTT
ACAACGAAGCTTGTTTTATTGGTTTGGAGTAATAATTTGtggttttgaat
ttatttttccagATAATATCAACGATTTAAAAGCTACCAAAAACGAATCA
GATATTGAAGAAACTTCAAAAGAAGATATCAATGACTCAAGTGAAGAAAC
GGACAGTGCAACAGAAATCGAAGACATAATAAAGGAAGCTGTAGATAGAA
ATAAGGACGAGGAAAAAGTTGTAAATGAAGAAGGTACAAAATTGAACGAG
AAAAAGACTCGCAAAAAGTCTAGGAGAGTTTGGAAAACAAGCGAGCAACG
GATGTACCTCACTTATTTCTATAACAACGAATCGCAATATccaagtaaaa
aagaaaaattacagcTAAGTAATGATTTACAAATATCTACCAAACAGGTT
AACACGTGGTTTCATAATCGACGCGCAGCTGATCGTAAAAAGGCTAAAGA
GGAACTGAGTCTAGTCACTATGGTTCGTATTGAACGTTGGGAGAATCTGT
ACGGTATGATTGCCCCGAATAAACGGACAAAGAGAAAGAGTAGCGAGAAA
ACGTCGTAATAGGGTTTTGATACTATTTTTTGAAGTAGATTTTGgaaatt
atagaaaaaatttagtttttgttaACACTTTTAGGGTTTTGATATTATTT
TTTGAAGTAGATTTTGgaaattatagaaaaaatttagtttttgttaACAC
TTTTAGGGtcttgatattattttttgaagtagattttggaaattatagaa
aaaatttggtttttgttAACACTTTTAGGTAAA Coding sequence (CDS) from alignment at scaffold_49:412255..413787+ >TCONS_00068785 ID=TCONS_00068785|Name=TCONS_00068785|organism=Clytia hemisphaerica|type=CDS|length=1218bp|location=Sequence derived from alignment at scaffold_49:412255..413787+ (Clytia hemisphaerica)
ATGGGGGACGTTCTTGAAATTGGTGATCGACTTCTTATCAGCATAGACGA
TGATGATTATCTTGAAGACAGCGTTGAAACAAAAACTACCTTAAAGGAGA
AGGGAAAACAAGATAATATCAACGATTTAAAAGCTACCAAAAACGAATCA
GATATTGAAGAAACTTCAAAAGAAGATATCAATGACTCAAGTGAAGAAAC
GGACAGTGCAACAGAAATCGAAGACATAATAAAGGAAGCTGTAGATAGAA
ATAAGGACGAGGAAAAAGTTGTAAATGAAGAAGGTACAAAATTGAACGAG
AAAAAGACTCGCAAAAAGTCTAGGAGAGTTTGGAAAACAAGCGAGCAACG
GATGTACCTCACTTATTTCTATAACAACGAATCGCAATATccaagtaaaa
aagaaaaattacagcTAAGTAATGATTTACAAATATCTACCAAACAGGTT
AACACGTGGTTTCATAATCGACGCGCAGCTGATCGTAAAAAGGCTAAAGA
GGAACTGAGTCTAGTCACTATGGTTCGTATTGAACGTTGGGAGAATCTGT
ACGGTATGATTGCCCCGAATAAACGGACAAAGAGAAAGAGTAGCGAGAAA
ACGTCGTAAATGGGGGACGTTCTTGAAATTGGTGATCGACTTCTTATCAG
CATAGACGATGATGATTATCTTGAAGACAGCGTTGAAACAAAAACTACCT
TAAAGGAGAAGGGAAAACAAGATAATATCAACGATTTAAAAGCTACCAAA
AACGAATCAGATATTGAAGAAACTTCAAAAGAAGATATCAATGACTCAAG
TGAAGAAACGGACAGTGCAACAGAAATCGAAGACATAATAAAGGAAGCTG
TAGATAGAAATAAGGACGAGGAAAAAGTTGTAAATGAAGAAGGTACAAAA
TTGAACGAGAAAAAGACTCGCAAAAAGTCTAGGAGAGTTTGGAAAACAAG
CGAGCAACGGATGTACCTCACTTATTTCTATAACAACGAATCGCAATATc
caagtaaaaaagaaaaattacagcTAAGTAATGATTTACAAATATCTACC
AAACAGGTTAACACGTGGTTTCATAATCGACGCGCAGCTGATCGTAAAAA
GGCTAAAGAGGAACTGAGTCTAGTCACTATGGTTCGTATTGAACGTTGGG
AGAATCTGTACGGTATGATTGCCCCGAATAAACGGACAAAGAGAAAGAGT
AGCGAGAAAACGTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068785-exon-scaffold_49-1491911889:412255..412429 | TCONS_00068785-exon-scaffold_49-1491911889:412255..412429 | Clytia hemisphaerica | exon |
| TCONS_00068785-exon-scaffold_49-1510915933:412255..412429 | TCONS_00068785-exon-scaffold_49-1510915933:412255..412429 | Clytia hemisphaerica | exon |
| TCONS_00068785-exon-scaffold_49-1575043694:412255..412429 | TCONS_00068785-exon-scaffold_49-1575043694:412255..412429 | Clytia hemisphaerica | exon |
| TCONS_00068785-exon-scaffold_49-1491911889:413067..413787 | TCONS_00068785-exon-scaffold_49-1491911889:413067..413787 | Clytia hemisphaerica | exon |
| TCONS_00068785-exon-scaffold_49-1510915933:413067..413787 | TCONS_00068785-exon-scaffold_49-1510915933:413067..413787 | Clytia hemisphaerica | exon |
| TCONS_00068785-exon-scaffold_49-1575043694:413067..413787 | TCONS_00068785-exon-scaffold_49-1575043694:413067..413787 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:412255..413787 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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