TCONS_00068792 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068792
Unique NameTCONS_00068792
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2758

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068792 ID=TCONS_00068792|Name=TCONS_00068792|organism=Clytia hemisphaerica|type=transcript|length=2758bp
ATGGTTCATTAATTTTGAACAATGGACACCTGTTAACTTTCTGTATAATG
TTAATAGGAAAAAACTCAAAAGATTAAATTAAATACAATTAGTGATTTTT
TTAGCGTcggaaaaaaagaatttactatcaaattttagtatttttttttt
aatttaggattttttattagtcgcatttgaaatattttgcaaaTATGTGG
CGACTAACCATTTTATTGGTGGCTCTATGCATCTTCACTGCAAGCATCGA
AAGCAGAGCTTTGAAAGCCTCACATTCGAAATCACACCAACACGCTTCAC
ATGTCACCAAATCTGAGAAAGCAGACAAAGGGCCTGGAAAGAAAGcGGAA
GTGCACGCAGCCAAAGTGAGCGAAGAAGATGATGATGAGGATGGACCAGC
TGAAGAAGCTGATGAAGATGCCAGTATCAATGAAGATAATGGATCTGCTG
CTTCTGCCAGATCTCCAGTTATCCTCCCTCCTCCAATGCCTTCAAACAAC
CAAGTCCGACCACCACCACAACGTGCTTTGAAATGTCCACAACCATGTCC
ACAAGATTGTGCCCAATCTGGATGTTCACCAAGCTGTTGTATGTCTGGTA
TGCCAATGCCACAACAACCCATGATGATGCCTATGCCAATGATGATGCCT
GGAATGATGCCTTCGTGCCAACCAGGATGTATGCCACAAGGATGTGCCCC
ACCAGGATGTATGCCACCTCCACCATGCTCACCACCAGGTTGTCAACCAC
CAGCCAGCTGTAATCCTGGATGCGTCCCACAACAGCAAGCTATGATGCCT
ATGCAAATGGCTCAACAAGCTTCTTGTCAACCAGGATGTATGCCACAAGG
ATGTGCTCCACCAAGCTGTATGCCACAAGCCTGTATGCCACCAAGTTGCA
TGCCACCACCAAGCTGTAACCCTGGATGTGTCCAACAACCAGCAATGCAA
TTCAAAGTCCAAGTTTTACCTCCACAAATCTTCCAATTGCCAGCTGCACA
AGCTTGTCCACAACAATGCCAACCTGGATCTTGCCAAGTTGGCTGTCCAA
CATCTTGCTGTCCACAACCAGGAATGATGCAACCTCCACAAATGATGATG
ATGCCTCCACAAATGCCGGCTGGATGTAACCCAGCTTGCCAACAAAGCTG
TGCACCATCATGCCCACGTCAATGCTGTCCACAAACTCCACCAATGATGG
CTCCACCACCAATGCCAGCAGGTTGCGCACCATCCTGTGCACAACAATGC
AGTGCACAATGTCAACAGCAATCATGCTGTGGTGCTGGTATGCAACAACC
AATGATGATGCCTGCTCCAATGATGATGCCAGCTCCAATGCCAATGCAAA
TGCAATCTGGATGTCCATCTCTTTGCCAACAACAATGTGCTCCACAATGT
CCAAGAATGTGCTGTGGGCCAGGACCAGCTGGAAAATAGATCTTCACCAA
TAGTTATTCTAATGAGATGACTTAGTAGATAAATCTCTACTTGGTAAAAT
ACGATCATGGACTGTCAATGAATAACATCTTTGTAAAGACGATTTGatag
gattttttatttcagactCTCCAAATTCTTCCGAATCTGTTAGATTGAAA
AACACTTTTGTAGATTCTTAAAACTGAAGTTTTCAAATTCACCAGTAGAT
TTTGCCATAATACTGTCGTGTTGATCTGTTAATTTGTCACGTGTCTTTCT
TTTTGACAAAACAAAAAGTAGGTAGTAGGCTTTCCAAATGAATTATTATa
gttatttttttgtatatttaataaaaactatatattagttctatttatac
tgagacgattaatttgtatgcgacgagcaatttagaaaatgagcattatg
gaggagtgtactttccattcaggtttcaataaataggatctcctccacag
atcacattttacaaacttctcgtctcagacgatttttccgtctcagtata
aatggaactattatttatttttttgtgaaagaattaaaatatatctaaac
aactttttaaaagtttctacTAACACGCACgtttcacagacccggtaaaG
CTTCCACCCAAATGATTTTCCCCGTTGAAAAATGATCcaaaatttcaacc
ccactgagAAATTACCTTATCATTTGTATCCCAATGGGAAATTGaatgga
aatgaaaatgaaaattgcaCCCCAAAACCATTTCCATGGACTCTTCCACG
ATCGGTgacgaaatacttggcacaaaaaggaaatccaccggggtgttttg
aaaccacaatcgatttgcaagtgcttTATAGTATGTTggaagtgtagagt
tttaacgctagacttaggaggaccttaggatctgaagatccaaaagttca
aaaggccccctcaaaaatggtccagtcgggcttgaaatatagcctagaaa
tcaataaatccctcccatcaaaataatcgttgaaatcaagttgaaggcct
gaaattgacattctcgctcgaacttcaattttcgaaaaatggtaaatcag
ccaaaagtgccaatatgttattgCACCGATTGCAgatggaaacaatagat
tttctatccccaccCATTGGGATTTGGATTGCAATTTTCATTCCCACTGA
GGGCGAAActccaccgggtcactgagagaCAGGGGTATCTTCTAGAAGTA
GAATAGGAAACTAGTGAACTTTATAAAAAACTTCAGGAGAAAAATAACAT
ACGGATGAAAGGTTTATTAGTCTGGAAATCTACACAGACCACTGTCTCAC
TAATCGTC
Run BLAST on NCBI

transcript from alignment at scaffold_49:494528..500575+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068792 ID=TCONS_00068792|Name=TCONS_00068792|organism=Clytia hemisphaerica|type=transcript|length=6048bp|location=Sequence derived from alignment at scaffold_49:494528..500575+ (Clytia hemisphaerica)
ATGGTTCATTAATTTTGAACAATGGACACCTGTTAACTTTCTGTATAATG
TTAATAGGAAAAAACTCAAAAGATTAAATTAAATACAATTAGTGATTTTT
TTAGCGTcggaaaaaaagaatttactatcaaattttagtatttttttttt
aatttaggattttttattagtcgcatttgaaatattttggtaagtttcac
tttttttgaattctatatAAAGTATCCAAATAAGcattataaaaataata
atcaaaAGATGGATTTGTGGGTTCTAGTGCATAATTAACATTATTTGGTT
GCTTTTTGGACTTGAAATTTTAATGGCGtttgagttttaaagctatcGTT
ATGCGGAATCATGTTAGGCAAAAGATcgagttttaaatttttatttttta
gcaaaTATGTGGCGACTAACCATTTTATTGGTGGCTCTATGCATCTTCAC
TGCAAGCATCGAAAGCAGAGCTTTGAAAGGTATGTTACATTTTGAGCTTC
ATTATCATTACAaaattacacccccttctctcTGGCCCACTGAGACCCCT
TTCCAccggaaaaattggccaaaatatcgtccccggtggaaaatgaTCCT
CCAATCTTTGTCCccaatgaaaataatcaaataaactaaccctcactgca
aaatattatgttatttcaccaccactgaattttctgacttaaaaacaaaa
gaattgaaactcCCAGCCATAGAAACATGGGAacatcaatccccattgag
tttgaGTTCGTTTCTATCCTACCGGGTCTATGATAAGGGGGTGTGAAATT
GTTCAACAATCCATGAAAAGATTAATAGATACCCTGTCCGAAACGAAATA
AATGGATCCGGTTCGTTTGGACCAAATGTCCGAAATGAAATAAGTGGGAG
GACTGTATGTTTCTTTTAGatgtttcttcttctctatcTAGTTTCGTACT
AATCATAATTTACAAATGCCGCGCTATTTATATATCCACGTGACCCTACT
GGTCACGTGGTCAAACTGTCAATCATAATTTCTATTCCACGACATACCCT
GTCTCGACAAAAAGCGTTGcaagttttgtattttattttgagTTTCAAAT
ATTGCTTTCCTGTCTGGTCTTACCGATACTCAATCAATCATGGTTATTAT
GAAATCTAGGAATTGAAATCTCAAGAAGTATTGCTCTTGAACGAAAAAAT
ATAACTATAAAAGTATTATCTCGGTGGATAAATAATTCTGAGTGGATGAA
TTCAAGACATACAGTAGGAATTTAAAAGCAATGTATCAAAATGTACAGAC
TGTCCGATTTTCGGAGCTAAACTTTACTTTGTCTATTCCATGAGAAAACT
GAACAATAGTGGTAACTTTTTCCGTCGAGTTTTATTTCTATACTACCATT
TTTTTCGTAAAGGggattgagtttgaagcccgaagggctagaaaaGAATC
TCTAccctaacctttcccaggcaagaaaaggtgaagccacttattacttc
ccatccagaacgcacATAGAACGCGCCGAAATGATGGTGACGAATTGTAT
CTGTCGAcgaattgtattttttgaaatctagcgatagattttactttcaa
tctggtgtttgtgtaaaaaccacgcgcaggCGTTCTGGaagggaaataag
tggcttcatttcccatctaggagtctcgagtctagcccttcgaggcttgg
aagtcaatggggAATACCTTTAAAATGCTCAAGGATAAACGTGACCCCTC
TAATTCTTTACTTATCAATTGATTTGATCTACTCTTTCAACGAATTGTAT
CTTCTTTCAGCCTCACATTCGAAATCACACCAACACGCTTCACATNTTTG
ATTTGATTTACTCTTTCAACGAATTGTATCTTCTTTCAGCCTCACATTCG
AAATCACACCAACACGCTTCACATGTCACCAAATCTGAGAAAGCAGACAA
AGGGCCTGGAAAGAAAGgtataaatttgttttttattgcaataaatcaag
ttttgtttgtAATGGAAATCGCCTGGATTTTCGTCTTACGTCTTACCTTT
TGATGTCTTCAATTTAAATTACATGCTTAAGTGAAGGGCAACTTTAATCA
CTTCCAGTTCAAATCTCAACATGATTTGTTTACCTTTTAATCCAACTTAA
TTTACAAACTCCGGACCAGAAAGCCTACTGTGTTTTATTTACCCGGGAGA
AGGTTCGGgtacttgccaagtgaaccgtacCGAGTGGGAATTGAACCAGG
GTTGCCCGTGCAGCAACTAAAGGTAATAACCACTATACCAAAACGTCATT
AATAAACTTCCTAATGCTTCATAAAAATAGAATACccttttttgaccatt
ttagcGGAAGTGCACGCAGCCAAAGTGAGCGAAGAAGATGATGATGAGGA
TGGACCAGCTGAAGAAGCTGATGAAGATGCCAGTATCAATGAAGATAATG
GATCTGCTGCTTCTGCCAGATCTCCAGTTATCCTCCCTCCTCCAATGCCT
TCAAACAACCAAGGTAGATATTATATAAAGAGTATAGATAAGAGTTAAAG
AGCTCGATTTAACCTCTTGATGAAGGATGCATGAAGTGTAGTAAAGTAAA
CTTCAATCGATATTGTTCAATAGAATCGAAGAGTAATCCATTCCTGTATT
TCAGTCTTTGCGAATCTCCTACAACCACTTAATTTTAGAGCTTCAACATG
ATAAGACTTTCTTAGATTTTTCTAACTATGTAAGCCAAAAAGATTACAAG
GTTGAAAATTAGTTGAAAATGATAGTATGAAAGGAAGTTTATgagaacac
ccctgtgtcacagtcccggtgggatttttttcCCACAATGGGGGTAAAGA
TTTATCGACGTCCCAATggggattgaaattctattgttgcaagcttaaaa
tatccagtggggatggttttggagtgcaatttatgacattgaatttcgaa
tgggaatgaaattaaagtcaatttcccagtggggctgaaattataGAGTA
TATTTCTTAAACAGTGAGTTGGGgccccaccgggtctgtgacacaggggt
gtatgagAACTTCTTAGCTTACCATATTAATACAAGACAAAATTTGCTCA
TAAAGATGGAGCCATTAATCGAGCTAAAGTTACGAGGAATCAGAAAAACA
ACTTTAGCTTCAGAAGTATAGATTATTAAGAGTTTCCTTTCTACTTTTTA
TCCACTTAGGTCTTGATATAAGTAAAAACCCCGAAGCCATTGCAGCAGCA
AGTAATTTACGCCAAGCCATTCATGATAGTCTGGGTGAGCAACACATACA
CATCACATACACATTTCTTAAAATGATTTAACTAAAACAAACGGCCATTC
AATGTACATAACGTTTATAAATGTACGTAAAAATGAATGTTCATACATAT
ACTACACTTTGGAACAAAAACTGGCCATCGGACTTTaaattctttcaaaa
ctttCCATTTTTGAACTCgattattgaaaaacaaaacagacgAAAAATGA
CATTccatttttctttgattttgtagGCAAATTAGCCAGAGCTGAAATAG
ACATGCACAAAGCAATCGTTAACCCAAACAAAAAACAAGATGGTATGTGT
TGCTCACTGTATACATTGGTACCTTATTAACATTACTAAGATCCACTGGG
ATTAATATTGATCTAAAACTAGGTGACAGATGTTTggtcaatttcttttt
ctcttgGTAGATGTCTTATCCCTGTTTTTCAAGATAATAGAATTGTTTTA
TAAAGCTTTACTATACCAATTTATTTGTCTCGTTTAATTTTTAGTCCGAC
CACCACCACAACGTGCTTTGAAATGTCCACAACCATGTCCACAAGATTGT
GCCCAATCTGGATGTTCACCAAGCTGTTGTATGTCTGGTATGCCAATGCC
ACAACAACCCATGATGATGCCTATGCCAATGATGATGCCTGGAATGATGC
CTTCGTGCCAACCAGGATGTATGCCACAAGGATGTGCCCCACCAGGATGT
ATGCCACCTCCACCATGCTCACCACCAGGTTGTCAACCACCAGCCAGCTG
TAATCCTGGATGCGTCCCACAACAGCAAGCTATGATGCCTATGCAAATGG
CTCAACAAGCTTCTTGTCAACCAGGATGTATGCCACAAGGATGTGCTCCA
CCAAGCTGTATGCCACAAGCCTGTATGCCACCAAGTTGCATGCCACCACC
AAGCTGTAACCCTGGATGTGTCCAACAACCAGCAATGCAATTCAAAGTCC
AAGTTTTACCTCCACAAATCTTCCAATTGCCAGCTGCACAAGCTTGTCCA
CAACAATGCCAACCTGGATCTTGCCAAGTTGGCTGTCCAACATCTTGCTG
TCCACAACCAGGAATGATGCAACCTCCACAAATGATGATGATGCCTCCAC
AAATGCCGGCTGGATGTAACCCAGCTTGCCAACAAAGCTGTGCACCATCA
TGCCCACGTCAATGCTGTCCACAAACTCCACCAATGATGGCTCCACCACC
AATGCCAGCAGGTTGCGCACCATCCTGTGCACAACAATGCAGTGCACAAT
GTCAACAGCAATCATGCTGTGGTGCTGGTATGCAACAACCAATGATGATG
CCTGCTCCAATGATGATGCCAGCTCCAATGCCAATGCAAATGCAATCTGG
ATGTCCATCTCTTTGCCAACAACAATGTGCTCCACAATGTCCAAGAATGT
GCTGTGGGCCAGGACCAGCTGGAAAATAGATCTTCACCAATAGTTATTCT
AATGAGATGACTTAGTAGATAAATCTCTACTTGGTAAAATACGATCATGG
ACTGTCAATGAATAACATCTTTGTAAAGACGATTTGataggattttttat
ttcagactCTCCAAATTCTTCCGAATCTGTTAGATTGAAAAACACTTTTG
TAGATTCTTAAAACTGAAGTTTTCAAATTCACCAGTAGATTTTGCCATAA
TACTGTCGTGTTGATCTGTTAATTTGTCACGTGTCTTTCTTTTTGACAAA
ACAAAAAGTAGGTAGTAGGCTTTCCAAATGAATTATTATagttatttttt
tgtatatttaataaaaactatatattagttctatttatactgagacgatt
aatttgtatgcgacgagcaatttagaaaatgagcattatggaggagtgta
ctttccattcaggtttcaataaataggatctcctccacagatcacatttt
acaaacttctcgtctcagacgatttttccgtctcagtataaatggaacta
ttatttatttttttgtgaaagaattaaaatatatctaaacaactttttaa
aagtttctacTAACACGCACgtttcacagacccggtaaaGCTTCCACCCA
AATGATTTTCCCCGTTGAAAAATGATCcaaaatttcaaccccactgagAA
ATTACCTTATCATTTGTATCCCAATGGGAAATTGaatggaaatgaaaatg
aaaattgcaCCCCAAAACCATTTCCATGGACTCTTCCACGATCGGTgacg
aaatacttggcacaaaaaggaaatccaccggggtgttttgaaaccacaat
cgatttgcaagtgcttTATAGTATGTTggaagtgtagagttttaacgcta
gacttaggaggaccttaggatctgaagatccaaaagttcaaaaggccccc
tcaaaaatggtccagtcgggcttgaaatatagcctagaaatcaataaatc
cctcccatcaaaataatcgttgaaatcaagttgaaggcctgaaattgaca
ttctcgctcgaacttcaattttcgaaaaatggtaaatcagccaaaagtgc
caatatgttattgCACCGATTGCAgatggaaacaatagattttctatccc
caccCATTGGGATTTGGATTGCAATTTTCATTCCCACTGAGGGCGAAAct
ccaccgggtcactgagagaCAGGGGTATCTTCTAGAAGTAGAATAGGAAA
CTAGTGAACTTTATAAAAAACTTCAGGAGAAAAATAACATACGGATGAAA
GGTTTATTAGTCTGGAAATCTACACAGACCACTGTCTCACTAATCGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042897XLOC_042897Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068792-exon-scaffold_49-1491911889:494528..494716TCONS_00068792-exon-scaffold_49-1491911889:494528..494716Clytia hemisphaericaexon
TCONS_00068792-exon-scaffold_49-1510915933:494528..494716TCONS_00068792-exon-scaffold_49-1510915933:494528..494716Clytia hemisphaericaexon
TCONS_00068792-exon-scaffold_49-1575043694:494528..494716TCONS_00068792-exon-scaffold_49-1575043694:494528..494716Clytia hemisphaericaexon
TCONS_00068792-exon-scaffold_49-1491911889:494929..495006TCONS_00068792-exon-scaffold_49-1491911889:494929..495006Clytia hemisphaericaexon
TCONS_00068792-exon-scaffold_49-1510915933:494929..495006TCONS_00068792-exon-scaffold_49-1510915933:494929..495006Clytia hemisphaericaexon
TCONS_00068792-exon-scaffold_49-1575043694:494929..495006TCONS_00068792-exon-scaffold_49-1575043694:494929..495006Clytia hemisphaericaexon
TCONS_00068792-exon-scaffold_49-1491911889:496417..496494TCONS_00068792-exon-scaffold_49-1491911889:496417..496494Clytia hemisphaericaexon
TCONS_00068792-exon-scaffold_49-1510915933:496417..496494TCONS_00068792-exon-scaffold_49-1510915933:496417..496494Clytia hemisphaericaexon
TCONS_00068792-exon-scaffold_49-1575043694:496417..496494TCONS_00068792-exon-scaffold_49-1575043694:496417..496494Clytia hemisphaericaexon
TCONS_00068792-exon-scaffold_49-1491911889:496882..497040TCONS_00068792-exon-scaffold_49-1491911889:496882..497040Clytia hemisphaericaexon
TCONS_00068792-exon-scaffold_49-1510915933:496882..497040TCONS_00068792-exon-scaffold_49-1510915933:496882..497040Clytia hemisphaericaexon
TCONS_00068792-exon-scaffold_49-1575043694:496882..497040TCONS_00068792-exon-scaffold_49-1575043694:496882..497040Clytia hemisphaericaexon
TCONS_00068792-exon-scaffold_49-1491911889:498322..500575TCONS_00068792-exon-scaffold_49-1491911889:498322..500575Clytia hemisphaericaexon
TCONS_00068792-exon-scaffold_49-1510915933:498322..500575TCONS_00068792-exon-scaffold_49-1510915933:498322..500575Clytia hemisphaericaexon
TCONS_00068792-exon-scaffold_49-1575043694:498322..500575TCONS_00068792-exon-scaffold_49-1575043694:498322..500575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:494528..500575 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.85977e-05	0.517282	0.120645	0.0507586	2.97081	3.42505	50.9229	54.2502	26.1721	23.8394	67.0408	41.88	70.1617	59.3526	39.5394	131.808	72.1878	64.9169	0.242999	1.32243e-05	32.1093	37.3154	31.2982	31.2511	50.932	58.5639	7.74115	2.52591	0.156732	0.306066
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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