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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068796 ID=TCONS_00068796|Name=TCONS_00068796|organism=Clytia hemisphaerica|type=transcript|length=2852bpRun BLAST on NCBI transcript from alignment at scaffold_49:551073..558011+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068796 ID=TCONS_00068796|Name=TCONS_00068796|organism=Clytia hemisphaerica|type=transcript|length=6939bp|location=Sequence derived from alignment at scaffold_49:551073..558011+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00068796 vs. Swiss-Prot (Human)
Match: CHSS2 (Chondroitin sulfate synthase 2 OS=Homo sapiens GN=CHPF PE=1 SV=2) HSP 1 Score: 178.718 bits (452), Expect = 2.488e-46 Identity = 118/401 (29.43%), Postives = 199/401 (49.63%), Query Frame = 2
Query: 1184 EKKLTWPLGYPRPFRPSSRFEVIQWTLFDKNKMYAFTDQEPTSSFPASYYGDFTEILQTVKQAINQKYGN----RRLELLNGYHRVDPKRGAEYLIEMKDKSSDK-------VYRYQLLRPFSRVESLSMPAATEQKGIHIVLPLLKDDMKYFEKFMQMYKRLCLQSGENVVLLTVFV--NIRDGXXXXXXXXXXXXXNLISRYKQSYMWAQLPWLQVGVKHISDVLVMDIVSMKLPSNALILLLSHHNHFTVNFLNRCRVNVVTGLQVFFPIPFLEYNPDIVYNGKQKPAFSEVHTTTGFWGRDSYQVGCFNNNDYKAA--RMWKNDFLDENLPNNKTILGVF-EGSNLNVFRALDSELHTWYEFENCVSDAKTNK-TGCHFKNSQRLGNRAQLAQVFFD 2335
++ WP+G P P RP+SRFEV++W F + ++ D P + D ++L T + +N++Y ++ +L+NGY R DP RG EY ++++ ++ R QLLRP SRVE L +P TE + ++LPL + F++ + L+ G+ LT+ + R + + F K ++ ++ + A++PWL V S + +MD++S K P + L LL T +FLNRCR++ ++G Q FFP+ F ++P + Q P E+ TG + R + CF N+DY AA R+ +E L + + +F S+L+V RA++ L Y + C + + C + LG+R QLA + F+
Sbjct: 370 DQAAAWPVGIPAPSRPASRFEVLRWDYFTEQHAFSCADGSPRCPLRGADRADVADVLGTALEELNRRYHPALRLQKQQLVNGYRRFDPARGMEYTLDLQLEALTPQGGRRPLTRRVQLLRPLSRVEILPVPYVTEASRLTVLLPLAAAERDLAPGFLEAFATAALEPGDAAAALTLLLLYEPRQAQRVAHADVFAPVKAHVAELERRFPGARVPWLSVQTAAPSPLRLMDLLSKKHPLDTLFLLAGPDTVLTPDFLNRCRMHAISGWQAFFPMHFQAFHPAVAP--PQGPGPPELGRDTGRFDRQAASEACFYNSDYVAARGRLAAASEQEEELLESLDVYELFLHFSSLHVLRAVEPALLQRYRAQTCSARLSEDLYHRCLQSVLEGLGSRTQLAMLLFE 768 The following BLAST results are available for this feature:
BLAST of TCONS_00068796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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