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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068801 ID=TCONS_00068801|Name=TCONS_00068801|organism=Clytia hemisphaerica|type=transcript|length=895bp
TTTTTCCGGGAGTAAAATgtataaaagaaaattgaaacgTAGCCATGAAA
TTATTCAAGCAAGGAGCAGAAGCACGCCTTTACAAAGCTGACTTTTTGGG
TAAGAAAGTCATTGTCAAAGAACGTTTTCAAAAGACATATCGACATCCAC
AATTAGATTTGAAGCTAACTCAAAAAAGAacccttcaggaagctagagcA
ATATTACGATGCAGAAAAGCTGGAATAAGTACACCTTTGGTGTATTTCAT
TGaccataaaaaacatcaaatttttatgGAGGAAATTCTTGACAGTTTGA
CACTCCGTGAAAGAATAGACACACTTTTAAAGCTTAACACAGATGAAGCT
AAATCACAACTTGTGTCAATGGCAAAAGCAATAGGAAAGATGATTGCTCA
TATTCACTCAGTTGACATTATCCATGGAGATCTTACGACATCCAATATCC
TTGTTACTTCCAAGAATGATAAAGAAGATTATGTTCTTATTGACTTTGGA
TTAAGTAGTGTTTCCAAATTTTCTGAAGATATGGGTGTTGATCTTTATGT
ACTGGAAAGAGCATTTTTAAGCACACATCCAAACACAGAATGGCTCTTTG
CTGAAATCTTAGACAGTTACTTTAAATGTATTACTGACCCGAAAAGAAAC
AAAGAGATCATGGAAAAATTAGAAGAAATTAGAATGCGCGGCCGAAAACG
AGTAATGATtggataagttttgatataataGTTTTTTTCTGCATTTTGTA
TATTCATAAGCATCAGAAGATCATTTCATTATTGTTTGTAATGTGAATGT
GTTTAtcattttcaacctttttcttttcaatttgtaAAACATTTGTCATT
GAtgagtcaatgcaatgacttccgaaatttttaagaatgttttac Run BLAST on NCBI transcript from alignment at scaffold_49:575185..577810+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068801 ID=TCONS_00068801|Name=TCONS_00068801|organism=Clytia hemisphaerica|type=transcript|length=2626bp|location=Sequence derived from alignment at scaffold_49:575185..577810+ (Clytia hemisphaerica)
TTTTTCCGGGAGTAAAATgtataaaagaaaattgaaacggtttatttttt
tcttcattatatttaagtttccattatcaaaattctagaaatgcgaattt
gtagaccatattagaaaatgtttaccgtcaactgctccaacttgggacta
tcttacgcaacatgagacggccattccaccaccatttcaccgaacttcca
aagtcatttgatttgagtttaatgaaccgcatatagaaaatacacgattt
ctctttcgcaccgagtgggcttttaaatcaaaatatgaaaaaaatccgta
gtagAACACGCGCGAGTGTccggaacgaagaagaccaaattagtggcaaa
acgatggagcgtttgacatcactcgcacgccaagttacacactcgctatT
TGGTAATCCCATTGGGCGGTAGCCGGTTAAGCGacaggcgttctctaatt
ctccattcggcgtccggtcattttgaatgaaaacaaaacttaaaaagggc
gcgctatcagtgaaagttatcaaaacaaatttgttgtcaaagagatttaa
cagtaagggAAAATACAGCTAGAATGCTCTTCACTTCATCCATAACATAT
TACAGAAATACATTGAAGAGCCTGGGACAATATACAGCCTTGGTGGACAC
CAACATTGACTGCAAACTATTCATTTAATTTCCCTACAATTTGAAGAGCA
CATTCAGTTTGGTCATACATATTCTCTATGATGTTCACAATATTTCGATT
GACACCAATTGATCTTAGTATTTTCCAAAATGCTTTCCTCCAGACTGTAT
CGAAAGCAGCTTTGAAGTCTATGAAGTGaaaatttaaaggctttttcaAT
CAACTGCCTAACAATGAAAACAACTGACATATAGACAGAAATTACAGAGT
CAAACACTACTTCTATAGGGTTTGTTAAAATCAGGTAAATTCAATTAGCA
TCTATCCTTTTTTGcatgttattttctttttaatgaaagtaaatcttttt
aatttattcaGTAGCCATGAAATTATTCAAGCAAGGAGCAGAAGCACGCC
TTTACAAAGCTGACTTTTTGGGTAAGAAAGTCATTGTCAAAGAACGTTTT
CAAAAGACATATCGACATCCACAATTAGATTTGAAGCTAACTCAAAAAAG
AacccttcaggaagctagagcAATATTACGATGCAGAAAAGCNcaggcgt
tctctaattctccattcggcgtccggtcattttgaatgaaaacaaaactt
aaaaagggcgcgctatcagtgaaagttatcaaaacaaatttgttgtcaaa
gagatttaacagtaagggAAAATACAGCTAGAATGCTCTTCACTTCATCC
ATAACATATTACAGAAATACATTGAAGAGCCTGGGACAATATACAGCCTT
GGTGGACACCAACATTGACTGCAAACTATTCATTTAATTTCCCTACAATT
TGAAGAGCACATTCAGTTTGGTCATACATATTCTCTATGATGTTCACAAT
ATTTCGATTGACACCAATTGATCTTAGTATTTTCCAAAATGCTTTCCTCC
AGACTGTATCGAAAGCAGCTTTGAAGTCTATGAAGTGaaaatttaaaggc
tttttcaATCAACTGCCTAACAATGAAAACAACTGACATATAGGCAGAAA
TTACAGAGTCAAACACTACTTCTATAGGGTTTGTTAAAATCAGGTAAATT
CAATTAGCATTTATCCTTTTTTGcatgttattttctttttaatgaaagta
aatctttttaatttattcaGTAGCCATGAAATTATTCAAGCAAGGAGCAG
AAGCACGCCTTTACAAAGCTGACTTTTTGGGTAAGAAAGTCATTGTCAAA
GAACGTTTTCAAAAGACATATCGACATCCACAATTAGATTTGAAGCTAAC
TCAAAAAAGAacccttcaggaagctagagcAATATTACGATGCAGAAAAG
CTGGAATAAGTACACCTTTGGTGTATTTCATTGaccataaaaaacatcaa
atttttatgGAGGAAATTCTTGACAGTTTGACACTCCGTGAAAGAATAGA
CACACTTTTAAAGCTTAACACAGATGAAGCTAAATCACAACTTGTGTCAA
TGGCAAAAGCAATAGGAAAGATGATTGCTCATATTCACTCAGTTGACATT
ATCCATGGAGATCTTACGACATCCAATATCCTTGTTACTTCCAAGAATGA
TAAAGAAGATTATGTTCTTATTGACTTTGGATTAAGTAGTGTTTCCAAAT
TTTCTGAAGATATGGGTGTTGATCTTTATGTACTGGAAAGAGCATTTTTA
AGCACACATCCAAACACAGAATGGCTCTTTGCTGAAATCTTAGACAGTTA
CTTTAAATGTATTACTGACCCGAAAAGAAACAAAGAGATCATGGAAAAAT
TAGAAGAAATTAGAATGCGCGGCCGAAAACGAGTAATGATtggataagtt
ttgatataataGTTTTTTTCTGCATTTTGTATATTCATAAGCATCAGAAG
ATCATTTCATTATTGTTTGTAATGTGAATGTGTTTAtcattttcaacctt
tttcttttcaatttgtaAAACATTTGTCATTGAtgagtcaatgcaatgac
ttccgaaatttttaagaatgttttac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068801-exon-scaffold_49-1491911889:575185..575223 | TCONS_00068801-exon-scaffold_49-1491911889:575185..575223 | Clytia hemisphaerica | exon |
| TCONS_00068801-exon-scaffold_49-1510915933:575185..575223 | TCONS_00068801-exon-scaffold_49-1510915933:575185..575223 | Clytia hemisphaerica | exon |
| TCONS_00068801-exon-scaffold_49-1575043694:575185..575223 | TCONS_00068801-exon-scaffold_49-1575043694:575185..575223 | Clytia hemisphaerica | exon |
| TCONS_00068801-exon-scaffold_49-1491911889:576955..577810 | TCONS_00068801-exon-scaffold_49-1491911889:576955..577810 | Clytia hemisphaerica | exon |
| TCONS_00068801-exon-scaffold_49-1510915933:576955..577810 | TCONS_00068801-exon-scaffold_49-1510915933:576955..577810 | Clytia hemisphaerica | exon |
| TCONS_00068801-exon-scaffold_49-1575043694:576955..577810 | TCONS_00068801-exon-scaffold_49-1575043694:576955..577810 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:575185..577810 + |
Blast
BLAST of TCONS_00068801 vs. Swiss-Prot (Human)
Match: PRPK (TP53-regulating kinase OS=Homo sapiens GN=TP53RK PE=1 SV=2) HSP 1 Score: 241.506 bits (615), Expect = 5.594e-78 Identity = 112/224 (50.00%), Postives = 166/224 (74.11%), Query Frame = 3
Query: 42 AMKLFKQGAEARLYKADFLGKKVIVKERFQKTYRHPQLDLKLTQKRTLQEARAILRCRKAGISTPLVYFIDHKKHQIFMEEILDSLTLRERIDTLLKLNTDEAKSQLVSMAKAIGKMIAHIHSVDIIHGDLTTSNILVTSKNDKEDYVLIDFGLSSVSKFSEDMGVDLYVLERAFLSTHPNTEWLFAEILDSYFKCITDPKRNKEIMEKLEEIRMRGRKRVMIG 713
++L KQGAEAR+++ F G+ ++K RF K YRHP L+ +L ++RT+QEARA+LRCR+AGIS P+V+F+D+ + ++MEEI S+T+R+ I + ++ T++ L ++AK IG+++A +H D+IHGDLTTSN+L+ ++ + VLIDFGLS +S ED GVDLYVLE+AFLSTHPNTE +F L SY T K+ + +++KL+E+R+RGRKR M+G
Sbjct: 35 GLELVKQGAEARVFRGRFQGRAAVIKHRFPKGYRHPALEARLGRRRTVQEARALLRCRRAGISAPVVFFVDYASNCLYMEEIEGSVTVRDYIQSTME--TEKTPQGLSNLAKTIGQVLARMHDEDLIHGDLTTSNMLLKPPLEQLNIVLIDFGLSFISALPEDKGVDLYVLEKAFLSTHPNTETVFEAFLKSY---STSSKKARPVLKKLDEVRLRGRKRSMVG 253
The following BLAST results are available for this feature:
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