TCONS_00068809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068809
Unique NameTCONS_00068809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1132

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068809 ID=TCONS_00068809|Name=TCONS_00068809|organism=Clytia hemisphaerica|type=transcript|length=1132bp
GAAAATTCGGATGGAACAGAACAGTAGACAGAGCAAACTTGTATACAGCA
GAGGAAAATAAAGATGGATATTTTGCCAGCAGAGATTTGGATTCACTTTA
TTCTTACAAATCTAAGTATTATTGATATTTGCAAGCTTCAGACTGTTTCA
AAACAATCTTTTAGCCTGGTGAAGTCGTACATGAAATCAatgaaatgttt
atattttgatGAGGAAATTGCTTTGATGTTGAACGAAGAAggtttgaaat
caatttttgcTTCTCTGAAATTTATTGAACAGATCTCACTTTCATTATGC
TGGAAATCTGCAACAGAAACTAATTTACTATTGTTAACAAGCAATTGCTC
AagaattcatttttttgaagCTGGCCATTCATCAAACATTACAGACAATG
TTTTGTTAAATCTCGCTGAAAATTGCCCCAAACTGGAGTTCTTAAACATT
GGTTCCTGCTATAATGTGACAGACACTGGTGTTTTGGCAATCGCCAAATT
TTCTTGCAACCTTAAACACCTCATTATCAGCTCTAACTATGGAATAACCA
GCAAAGGTTTATCTGCACTACTCAAACAATGTACCAATTTGGAAACACTT
GATATTGGGAGAACCTATTTATCAAATACCTCATTCGATGATATGTTGAG
GGAAGGTTAtgccaaaaatttaaaagaaattcgACTATACAAATGTCCAA
ATATTTCAGAAGGAATAATGGAACGTCTGGCAGCCAAAGGCATTATGATC
AACTCATGTTTTTGAAGAATCAAAATGTTTGACCTTACTCCTTGTAAGTA
GTTTTGTTCTCCTAATGGGCATACACAATAATGTTTAAAACCtaagattt
taattaaaaaatatgagATTTGTATTTAAATTGTGCAATTAGCATCAATC
ACCAGTTTATTTTTGTGGGTGTGTTTGAGTATGGGGCTGGGTGTAGTACA
CTTCTTGCTTGGACTTTTGTACTCTTGATCAATTAATGTTATCAATTAAT
ACTAATTTGAGTCATCTTCATTTTAGGCCTAATCAGTTTTTTCAATAATG
TCAGCTACTTGACCATACAAAATCTTTCCTCGCAGCTCCATTTCAAAAAA
AGGCTTCGAACTAACCACATTGGGCAGTGACC
Run BLAST on NCBI

protein sequence of TCONS_00068809-protein

>TCONS_00068809-protein ID=TCONS_00068809-protein|Name=TCONS_00068809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MDILPAEIWIHFILTNLSIIDICKLQTVSKQSFSLVKSYMKSMKCLYFDE
EIALMLNEEGLKSIFASLKFIEQISLSLCWKSATETNLLLLTSNCSRIHF
FEAGHSSNITDNVLLNLAENCPKLEFLNIGSCYNVTDTGVLAIAKFSCNL
KHLIISSNYGITSKGLSALLKQCTNLETLDIGRTYLSNTSFDDMLREGYA
KNLKEIRLYKCPNISEGIMERLAAKGIMINSCF
Run BLAST on NCBI

transcript from alignment at scaffold_49:755139..766374+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068809 ID=TCONS_00068809|Name=TCONS_00068809|organism=Clytia hemisphaerica|type=transcript|length=11236bp|location=Sequence derived from alignment at scaffold_49:755139..766374+ (Clytia hemisphaerica)
GAAAATTCGGATGGAACAGAACAGTAGACAGAGCAAACTTGTATACAGCA
GAGGAAAATAAAGATGGATATTTTGCCAGCAGAGATTTGGATTCACTTTA
TTCTTACAAATCTAAGTATTATTGATATTTGCAAGCTTCAGACTGTTTCA
AAACAATCTTTTAGCCTGGTGAAGTCGTACATGAAATCAatgaaatgttt
atattttgatGAGGAAATTGCTTTGATGTTGAACGAAGAAggtttgaaat
caatttttgcTTCTCTGAAATTTATTGAACAGATCTCACTTTCATTATGC
TGGAAATCTGCAACAGAAACTAATTTACTATTGTTAACAAGCAATTGCTC
AagaattcatttttttgaagCTGGCCATTCATCAAACATTACAGACAATG
TTTTGTTAAATCTCGCTGAAAATTGCCCCAAACTGGAGTTCTTAAACATT
GGTTCCTGCTATAATGCAagtggataaatatttttttattaaataagGTA
GAGTTCAGAATACAAACTACAAACCAAATTCTCTCTTACTGCCAGTAAGT
TTAAACCTGTCAACCCATTCTGGAAAAAAAGCTATAcaccagacccccgc
gctcgataggatcgatcatcggaacggctcgatgacggatcgatatgtga
tcgatggattacttatcgatccggataggagatcgatgNNNNNNNNNNNN
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NNNNNNNNNNGGTCGCTTCATTATTTCTTATTCGGCATTTCAAAAAAGGG
TCCGAAAATCAGaaggttttcttcttcaatttccgaAGAACATGTTCCAA
ATCTTCGAAACCATATTTTTCCGATAGCTTGATCGATCAGTGAACGGGAT
CTGAAAACAGAATGGAAAAAGACATCGTCAGTAAAGTATGAGAGGCGATT
AAACAAATTATCCAATTCACCCCGggtatccgattcaccccgtcctacgg
tagaggtgtcgataggtaatcgataggtgtcgataggtaatcgatagcga
gaaagatcgattaatattagagctcgatttttagaaagggtcgatagggt
cgataagatcgataaaagatcgatgatagatcgatgatagatcgatgata
gatcgataactaatcataagcttaaaaaaatcttgagtatcNNNNNNNNN
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NNNNNNNNNNNNNNNtccgtcatcgagccgttccgatgatcgatcctatc
gagcgcgggggtctggtatACATACGTTGGATTACATCCGGTGGTGTAGA
CTTTCAATTTCAAGGGCTTGAGTAGGccacgtcatatcttccttcgtttt
gagcgtaaaactcgtactcttcgggctatgagcactgctcttgttttgaa
tattgaaattctccagataaatcgcatgcacactgaggttttaatgaaac
aatagagagtttcgaaacctaagccaatcagctgtgttttaaacattctt
ttatttaaaatctctatNNaataagcaattcccggtgggggtcactagtg
gccgcctatagcagtgcctatagacgccgcctatagcagtgcctatagac
caagagtaaggcctaaaagcctggatctgtctattgtgtagactaggtCT
TGAGTCAGTCTACgccaaaaaatatctggtttATATATTACCATCTTTCC
AGAGTGTTATTAGACCTTTTCTTATCGCATTGTCATGTCAAATAGTTAGA
AAAAGTAATTGAACTTTACAGGGAAATCTTTAGTTCGATATAGAGCTTTT
CTAAGTTTAAGGTTTGCTTACATATTGCTATTTGTTTGATTAATGTTTGG
TTCCGCTTATAAGTGCGTCAGCTGTAGCTTAATACAAAACGCTGTTCAAG
AAGCTCAATAATAATTTATCAGCAATAACTGTAAATTGTACACATCAAAC
GTCAATAAACTAATCAAACTAACTAACCAAAGGTTTGATTGAGTTTGATT
AGCTCAACAAATGGAACATTTTCAtcagtttttttccaaaacaatTTGTC
GCAggcaaagattttcaaatttttcattttcaaagtagaAGTGATGTAAA
CCTTACAGCGCCGCATTTTTTTCATTgagatgaaaatttcaatttttacc
tATATTTGAGAGAAACGTAGAAATACCAATAACTGGCaacccccttagga
aattcataGGGTTCTATCAAAATCCGAGAcccccctaaatgtaggggggT
TAGAAATAATGTGTTCACACTACATTATATTTGGGAGAATGTACTTATAC
CCTgaatcaaattttagaaataatgCGTTTGGAAAAATTACTTTAAGGGA
GGGATATGAAATCAGACTATTTAAAGGGAGGGATAAGTAGTAAGGGTTTT
CAAAGGAAGTGACTGGCAGTGATAGTGTTTTTGATGATGTTAGTTTATAC
CATGAAGtgtgctattttttcaaaaaagatttcctaTCAGTAAATTCTCT
AAAAAGAATGTTATACAGCTCAAAAGTAATTGGAATTTATTAGTAAAAAT
ATTGGTACAGggggggggtccatgtacaaaacagcggcatgtatcagtac
tttgtagcaaatttcgattttaaacacccacccacccctataGTACACAA
TGTACAAAATAatatccagcaaactcccaaaaacaccccaacacccccta
tattttacaatatactatccagcactatccagcaaactcccaaatacacc
ctgacatcccctgtataatacaatatactatcaagcaaattgccaaatat
accccaacaccccccttacatagtacaatatactatccagaaaactacca
aatatacccctacaccccttcataaaataaaaattttaagccaaaaaact
tgaaactttggggcaagttttttattcttcccataaaaaaattttcaaaa
gattttctcgaaaattgtcaaaaacattgagaattttaaaagattttcga
caaaaatctaaaataaatcacaattttatttgattttggctttttagtac
acaaatactaagcagaaaatccgaaatttgaccctgacaccccctgtata
gtACAGGTATACTTAACAgcaaatcagaaatttgaccCCCATGTATAGTA
CACAAGTACTAAACagctaattttttttgaaaacacccacccaccccatg
aTACATGCCGCTTTTCTGTACATGGACCCCCCTGATTggtattatatatt
ttttctaaatacgGTTGTGGGATTCTTAAGGTGAAGTATAAAAGAGAGGG
CTAGATTTATAGGGTGGGTAGAGACCTCTTTTCAAACTTTGTTAGTTTGA
TTTGATCATGCCGGTTCCATAAATGACTATTTCTTCCTTGGTCCATATTC
TTCAGAAGAGATACTACAAGGAATGAGAAAAGAAGGGTATACCTGGCATC
TGGTTTAAAAGTTAGAACGATATAAAGGATGTCCTAGGAAACATCTTGCA
TACGATTTAGATGAATATCTTATAGTATCTCAATGTTATCATTTCAGGTG
ACAGACACTGGTGTTTTGGCAATCGCCAAATTTTCTTGCAACCTTAAACA
CCTCATTATCAGCTCTAACTATGGAATAACCAGCAAAGGTTTATCTGCAC
TACTCAAACAATGTACCAATTTGGAAACACTTGATATTGGGAGAACCTAT
TTATCAAATACCTCATTCGATGATATGTTGAGGGAAGGTTAtgccaaaaa
tttaaaagaaattcgACTATACAAATGTCCAAATGTAAGTTCATGTTGAA
CGTTGATAATTGAATTTTTATATGTGCAATCCATGTTAGTAAAATTTTAG
CTGGGTCAAAGTATTTGCTATAGCTTGGTAGCCTTGCATTTGTAGAATCT
CGATCCTTGACAGTTCAGTGATTCATGCCACCTTCAGGTAGGGCCCAATA
AGGCTTAATACTGTAATGGTATTGATTTTTGTTAGGATTGAATTttgcgg
ttgagctcatccgtgaaattttgagcttttgcaGAGACTTAATTCCGCAG
ATGACTCTATTGTCAGTTGTTGTGagaaattatttattatttgctatttt
tgctattttactGCCCAACTATGCATGTTGGTTGTGAAATACGCATTACT
AGTGCTTCGTTGATGGCGGTAAACATGTTAAAAGTGGTCTTTTGGAATTC
AATGCAAAAAGATTTCCTAGATAAAacctttcaaatttccaattGATTAC
AACCAAAGCTgcgaaaaaagcaaaatttaaTCGCAGCAAAAATTAGTCCC
ACTAATgaaaatttagtgaaaatttagtTTACAGCATACCTAAGTATATT
AAAAGTTCATCTATTGACTGAATAACACATAATAGCATTGGTATTATATT
TTCTAGATTTCAGAAGGAATAATGGAACGTCTGGCAGCCAAAGGCATTAT
GATCAACTCATGTTTTTGAAGAATCAAAATGTTTGACCTTACTCCTTGTA
AGTAGTTTTGTTCTCCTAATGGGCATACACAATAATGTTTAAAACCtaag
attttaattaaaaaatatgagATTTGTATTTAAATTGTGCAATTAGCATC
AATCACCAGTTTATTTTTGTGGGTGTGTTTGAGTATGGGGCTGGGTGTAG
TACACTTCTTGCTTGGACTTTTGTACTCTTGATCAATTAATGTTATCAAT
TAATACTAATTTGAGTCATCTTCATTTTAGGCCTAATCAGTTTTTTCAAT
AATGTCAGCTACTTGACCATACAAAATCTTTCCTCGCAGCTCCATTTCAA
AAAAAGGCTTCGAACTAACCACATTGGGCAGTGACC

Coding sequence (CDS) from alignment at scaffold_49:755139..766374+

>TCONS_00068809 ID=TCONS_00068809|Name=TCONS_00068809|organism=Clytia hemisphaerica|type=CDS|length=2106bp|location=Sequence derived from alignment at scaffold_49:755139..766374+ (Clytia hemisphaerica)
ATGGATATTTTGCCAGCAGAGATTTGGATTCACTTTATTCTTACAAATCT
AAGTATTATTGATATTTGCAAGCTTCAGACTGTTTCAAAACAATCTTTTA
GCCTGGTGAAGTCGTACATGAAATCAatgaaatgtttatattttgatGAG
GAAATTGCTTTGATGTTGAACGAAGAAggtttgaaatcaatttttgcTTC
TCTGAAATTTATTGAACAGATCTCACTTTCATTATGCTGGAAATCTGCAA
CAGAAACTAATTTACTATTGTTAACAAGCAATTGCTCAagaattcatttt
tttgaagCTGGCCATTCATCAAACATTACAGACAATGTTTTGTTAAATCT
CGCTGAAAATTGCCCCAAACTGGAGTTCTTAAACATTGGTTCCTGCTATA
ATGTGACAGACACTGGTGTTTTGGCAATCGCCAAATTTTCTTGCAACCTT
AAACACCTCATTATCAGCTCTAACTATGGAATAACCAGCAAAGGTTTATC
TGCACTACTCAAACAATGTACCAATTTGGAAACACTTGATATTGGGAGAA
CCTATTTATCAAATACCTCATTCGATGATATGTTGAGGGAAGGTTAtgcc
aaaaatttaaaagaaattcgACTATACAAATGTCCAAATATTTCAGAAGG
AATAATGGAACGTCTGGCAGCCAAAGGCATTATGATCAACTCATGTTTTT
GAATGGATATTTTGCCAGCAGAGATTTGGATTCACTTTATTCTTACAAAT
CTAAGTATTATTGATATTTGCAAGCTTCAGACTGTTTCAAAACAATCTTT
TAGCCTGGTGAAGTCGTACATGAAATCAatgaaatgtttatattttgatG
AGGAAATTGCTTTGATGTTGAACGAAGAAggtttgaaatcaatttttgcT
TCTCTGAAATTTATTGAACAGATCTCACTTTCATTATGCTGGAAATCTGC
AACAGAAACTAATTTACTATTGTTAACAAGCAATTGCTCAagaattcatt
tttttgaagCTGGCCATTCATCAAACATTACAGACAATGTTTTGTTAAAT
CTCGCTGAAAATTGCCCCAAACTGGAGTTCTTAAACATTGGTTCCTGCTA
TAATGTGACAGACACTGGTGTTTTGGCAATCGCCAAATTTTCTTGCAACC
TTAAACACCTCATTATCAGCTCTAACTATGGAATAACCAGCAAAGGTTTA
TCTGCACTACTCAAACAATGTACCAATTTGGAAACACTTGATATTGGGAG
AACCTATTTATCAAATACCTCATTCGATGATATGTTGAGGGAAGGTTAtg
ccaaaaatttaaaagaaattcgACTATACAAATGTCCAAATATTTCAGAA
GGAATAATGGAACGTCTGGCAGCCAAAGGCATTATGATCAACTCATGTTT
TTGAATGGATATTTTGCCAGCAGAGATTTGGATTCACTTTATTCTTACAA
ATCTAAGTATTATTGATATTTGCAAGCTTCAGACTGTTTCAAAACAATCT
TTTAGCCTGGTGAAGTCGTACATGAAATCAatgaaatgtttatattttga
tGAGGAAATTGCTTTGATGTTGAACGAAGAAggtttgaaatcaatttttg
cTTCTCTGAAATTTATTGAACAGATCTCACTTTCATTATGCTGGAAATCT
GCAACAGAAACTAATTTACTATTGTTAACAAGCAATTGCTCAagaattca
tttttttgaagCTGGCCATTCATCAAACATTACAGACAATGTTTTGTTAA
ATCTCGCTGAAAATTGCCCCAAACTGGAGTTCTTAAACATTGGTTCCTGC
TATAATGTGACAGACACTGGTGTTTTGGCAATCGCCAAATTTTCTTGCAA
CCTTAAACACCTCATTATCAGCTCTAACTATGGAATAACCAGCAAAGGTT
TATCTGCACTACTCAAACAATGTACCAATTTGGAAACACTTGATATTGGG
AGAACCTATTTATCAAATACCTCATTCGATGATATGTTGAGGGAAGGTTA
tgccaaaaatttaaaagaaattcgACTATACAAATGTCCAAATATTTCAG
AAGGAATAATGGAACGTCTGGCAGCCAAAGGCATTATGATCAACTCATGT
TTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042904XLOC_042904Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068809-proteinTCONS_00068809-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068809-exon-scaffold_49-1491911889:755139..755603TCONS_00068809-exon-scaffold_49-1491911889:755139..755603Clytia hemisphaericaexon
TCONS_00068809-exon-scaffold_49-1510915933:755139..755603TCONS_00068809-exon-scaffold_49-1510915933:755139..755603Clytia hemisphaericaexon
TCONS_00068809-exon-scaffold_49-1575043694:755139..755603TCONS_00068809-exon-scaffold_49-1575043694:755139..755603Clytia hemisphaericaexon
TCONS_00068809-exon-scaffold_49-1491911889:765086..765322TCONS_00068809-exon-scaffold_49-1491911889:765086..765322Clytia hemisphaericaexon
TCONS_00068809-exon-scaffold_49-1510915933:765086..765322TCONS_00068809-exon-scaffold_49-1510915933:765086..765322Clytia hemisphaericaexon
TCONS_00068809-exon-scaffold_49-1575043694:765086..765322TCONS_00068809-exon-scaffold_49-1575043694:765086..765322Clytia hemisphaericaexon
TCONS_00068809-exon-scaffold_49-1491911889:765945..766374TCONS_00068809-exon-scaffold_49-1491911889:765945..766374Clytia hemisphaericaexon
TCONS_00068809-exon-scaffold_49-1510915933:765945..766374TCONS_00068809-exon-scaffold_49-1510915933:765945..766374Clytia hemisphaericaexon
TCONS_00068809-exon-scaffold_49-1575043694:765945..766374TCONS_00068809-exon-scaffold_49-1575043694:765945..766374Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:755139..766374 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.67688	2.96112	1.05252	0.873329	0	0.507339	0.691843	0.404718	0.394444	0.749705	1.89421	1.03179	0.564654	0.194822	0.571814	0.531234	0.581507	0.534236	0.531178	0.430836	0.457359	0.767154	0.641018	0.548337	0.14332	0.135717	0.737875	0.0919659	0.700045	0.534926
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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