TCONS_00068818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068818
Unique NameTCONS_00068818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1654

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068818 ID=TCONS_00068818|Name=TCONS_00068818|organism=Clytia hemisphaerica|type=transcript|length=1654bp
CAAAACCCTTCTTTTTAGGACTGAAAAAGCGagtcaaaaaattaaacttg
TTTATTTCACTCCCTTGAAATTCAAGCTTGGGAAAAGCAAGCAGGCGACA
GGACAGCATCAAAAACTATTGTAAAAGAGAAATTATACAGCTTTCCATCA
AGATGATTTTACTTGAAATCAACAACACTATTGTAGAAGAAACTTTGAAG
TCACGTATTTCTCAAATTGCAGCAAATGGAAAAGCTGATGCAGTCGATAT
TAAAGTTGCTGactTTGATGGTTGCATTTTTCACATTGGAAACCAAGACG
AAAACAGAAATAAAATTATTGTTAGCatctcattaaaattttaccCAGAA
CTACAGAAGCATGGCGCAGATGCTAAAATTAAAGGCGAATATGGAGACTT
GATGATTACACCAGAAAGCGGATATGACATTTCACTTCTTGTCAATTTGG
AAGCTCTCCCTCCTAACTCAGATGAGCTAATCAAGAAAATTGGTCTACTA
AAGAGGAACTGTTTCGCATCGGTCTTTGAACGTTATTTCGACTTCTTGGA
ACGTGAAGAAGACAGTAAAGAGAAAGCCATTATTAATTACCGTGACGACG
AAACAATGTACGTGGAAGCTAAAGCTGACCGTGTCACTGTGATCTTTTCC
ACCGTATTCAAAGATGATGATGACGTAATCATTGGCAAAGTTTTCATGCa
gGAATTCCGTGAAGGACGAAGAGCCAGCCAGACAGCGCCGCAAGTTTTGT
TCAGTCACAAAGAACCACCACGCGAATTGGAAGGAACCAACGCCGCTAGA
GGAGACAATATCGGATACATTACTTTCGTTTTGGAGAAGCGCCACACGAA
AGCTGCTGCGCGTGAAAACACTATCAATCTGATCCACACTTTCAGAAATT
ATTTACATTATCACATTAAATGCTCAAAGGCTTACTTACATTCCCGTATG
CGTGCCAAGACTTCCGATTTCATCAAAGTATTAAACCGTGCTCGACCAGA
ACCCAAGACCACCGAAAAGAAAACCATCACTGGAAAGACATTCACGAGGA
ACTGATTGTCATTTGGGTGTGGTTTTCCTTGAATTGTGGGTAATAATGGA
GAGCAATCTGTCAATCATGATGGGAAGGATTTCTCTTGCTGcatttttgt
aaacaattttaaattagAAAACTTTTATTCAATTTAAATTATCAGCTTTT
TAAAGGACGTCTTGATTTGTATGAAATTTCTCGCTCTTGATTTAACACCT
ATTATTTTCCTGGATTCTAAGATGAACAATAGtgatttttttctaagaaa
tagtgaatttttgataCCCTAGTTTCTTTTGATGAATATTTTTcgttttg
tcaatattttttttgcaattttttttctcgcccCGTCCaacttcaatttt
attaatttatattagaaaaaaatgcaattcaattttgtttttcgtTATTT
GTTTATTAGTAACTAAATATGTCTTTCAAattgttcaaaaagaaaataat
tttagttaCTATGTTTTTGtacaaaataacatattttttttttccatttc
tcgTTACGTCTATTCCCCTAGGTGCCACATTTTTCATTTAGGTACGCCAC
AAAATTTAATTAATCAAATGTTTTTATGGTCTCCCAGAGTGTACTTGAAT
TTGG
Run BLAST on NCBI

transcript from alignment at scaffold_49:886819..906791+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068818 ID=TCONS_00068818|Name=TCONS_00068818|organism=Clytia hemisphaerica|type=transcript|length=19973bp|location=Sequence derived from alignment at scaffold_49:886819..906791+ (Clytia hemisphaerica)
CAAAACCCTTCTTTTTAGGACTGAAAAAGCGagtcaaaaaattaaacttg
TTTATTTCACTCCCTTGAAATTCAAGCTTGGGAAAAGCAAGCAGGCGACA
GGACAGCATCAAAAACTATTGTAAAAGAGAAATTATACAGCTTTCCATCA
AGATGATTTTACTTGAAATCAACAACACTATTGTAGAAGAAACTTTGAAG
TCACGTATTTCTCAAATTGCAGCAAAGTAAGTTCCTAGGTTTGCTTTGAA
TTGCTCCGTATTTTAACCAAGGCAAGACAGAGGTAGAGGGCTAATAAGGC
CGttcataaaaaattgtttggttcccgtcacccGACCGATCGTGATTTCT
ACTGAAAAGTCGGAGAGTCGGAGAGTCGGAAACCATTTTTCCTGACATCT
GAAACTCCACCATcaccagtcgggtgtttaagataaaaactgcaattatt
gctcttttcggaaattattgccgaaaacagcaattttttcaacgatgaaa
tgatgaatcagcaaaatgtgttgtccttttaagggcaaagatgtcagtgg
tgtttgaaaatagtaaaattgcatcAAGAAAAACTGTccgggaaatcctc
tcaattgcacgcttatgttccgagggcgtaagcgcgtaattgcatggtta
taatttacgcccgctcaCGCctcggttgaaattgcttagggatttcaagg
ggttcagaattctctaattcgggcgaaggcatggtttaacgggcaatcca
tttttacgaaatcttcttctacgataaattttgagtaaaactgccctagg
cttttgaaattcaacagagctttcggaaggaattgcgtATCAGAATAAta
acgcttaccgcccgtttcagaacaattttgattagcgtgtaattacacgc
ttaaaaattctgccattttgataaccatgcaattgcgcgcttacggcctc
ggaacataagcgtgcaattgagaggatttcccagactgaaaaaggttttt
cgaatttttaaaagtgattttttcaatttttcgttgctcaataacatgaa
aaattctaaaataatatgttaaaagatcctgcatcgatgccgaaacacag
ccagaaagagataacaaaaccccgttgtaaatttgtttacatatgactcc
attttgctatctgcattccaacaaaaaccagttgaaaacaaaactaaacg
aggcacagtgggcagctacttatcgcgagggtgtcaaataccatgTGTTC
ANTCGTTTACCACCCTTTTCTTCTAAGGAAAATTCTACCTTCTTGGACTG
TTTCgttcaaacagaaaatatttttcgcccgaccgaccgaccaacccact
ttttgatgttttgaatgACGGGAACCTAGGTATTTTTTACGAATGGCCTA
ATAaacctaacttttatttttttgttttagctAGCTAGCTTTTTAGTTTG
TTTAGTCTGACAGTAATAGAGTTTGACCTATTAATAAATTCTGCACCAAC
TTGCGAGCTATGGTCATAAGCAGAATTTTATAAGGACTACCGTAGAAATG
TCTAATAATCGACATACGCCTTCTAaagtcgacaccggatctgtaaaata
atcaaaacaaaccttgaatgaaattcttggtatcattcttattaaacaag
ttcatccatcaaactagaagttcaataaacattgcaatcctttcaattaa
aaaaaacagccaaattataagcagttttacacatcacacgaaacgcatgc
aaacttcctcgtaactttcttgtGTCCATCAtttaaattttacaacttta
ttacgcttcaagtctcgtgataaaaataattcgcgcgcttagcatggttt
ccccttccttatttataaaaaacacaGTTCTAGGCGCTAAGAGGGCGCAC
Accgtgatggccagtatggcgttcacattaaattcaaaaggaaaccgggt
tctttttattattttcgtttcacagtaaaaaggtctactaaaaaattctt
tgcgtgcaaaatgttgttttgatttggatatcttccttgaatgaaagcat
gctaattagtttttagtgactacatcgttaaagttttcttttggaaaaaa
aacccacttcacgtttcttacatttcaacaatctgtgacgtgatagggag
agtacaatttagtgattgattgataactttggtatgtatgtatttgttta
tgtttgattctttatttcgaagaccagcctacagctatgtcgaaataaca
aggcgcatgtcgatattaaacgactctacggtaacATTCTCAGAGCCTCT
CACAATGAGACCTTCTtcatgtggaaaacttttggtgaaATGGGCTATtc
ctaaaaaaattctcataacCACAAGGATTATTGTAAATTGGGAGAGTAGT
ATCCAAATtaacagtgcgtcacaaacagccatataaacaaaactcaacat
tctcacaaaagttgtatttttgatttcccaaaaattcgtctaaagcgttc
acttccacaataatttatgtaattgcaatttcgttCAGTTCACAGTCGGT
TTCAATATATACATGtgtttttagtcacgtgaccgaagtgcctactaaaa
caatccgggggtaagtggcaaagcaacacagcagattattcgtaaagtaa
agaaatatcttttggcattgacaatcaaatataatatattatattatatt
tccttaaattcaaaaatcaaaaattcatttttcattcgcgaaaaataaaa
ataatattacatactaagacgcccccgtcttttactcttgtttaatttcc
aatctcggaacgtgcaaaacgcccgtccgcccaatatccacccaatcagc
ttaaatttgCTTTCATAGTCCTTtggctttcaaaaaatagtatttaaaaa
ttatgaatttataataattacaaaaaacaaaaagtttgatacttcattat
ggaaatattcaataaattcctagtttcaatttcagtgggcgtttttctac
GGCTTcctttatcgcgcaatttttgcgtcacacaaactttcttggccgct
cgtaataattacgcatccaaatttggttctccattgtcaagtcaggatca
atggtgacgtcacctaagcataaaaaataaAGGATTTCGTTAGTTAGTGC
ATAtgttaatttgcgagatattctattcacCGCGCGAGCGCACATTTCGT
AGACTAGTcagaatactttcttttactcacgggattgatggtaactcttc
atcttcgttatttttaaaatgaagcacaaccgaaaaaaaacgaaacttca
gaaagttgcgtatttccagtgagtaaacgattctgacaattaccaaaact
gatgatgatgattttttttcggtcaggcaaatgtctcgtattgggagttc
tagtcttgacccctaagcctacacgagattgaagcgtttgggttaacgag
acaaaactccaaaatagctggtgttttgaagcgcttccgtgcgatcgaaa
tatcgctgtttgtgacgcactgattAAGAGATTCAGGTATGCTAAATAGG
AGAGCAGACACTTTGACCTAAATTCTTTCAGGGATTGCTTCAATTCGCAT
TCGGAGAACTAaagtctttattgtttccatttcgAGTAGTTGAAGTTTAT
TTACTATACCTAGTAAATGGGACTTAAGTCAAACTTTAATCATAAAAAAT
TGTTAGGTAAAAATCACTATTTCATATTCAAGTTTATAAATCTGTCGATA
GTCAAATTGTTATCTGACAACACCTTCTCTAGAAGAAGGGAGTTGTTCTT
CTGATTCTATGATGATATTTATCGGAATTAAACATTAACTGTTTAATACC
ACAATCTACAGACATTTGAACGAAATGTCCTGCATAATTACTTTGCTGTT
TTCAAATGAAACTACTGACGTCTTCAGTATGGCAAATAGAATGCAGCTTA
gtgttattaatttttaaacGAAAGTTTCCTTCTTCAGTATCGACTCAACT
GAAACCATGTTGTATCATTTTGCTAAGTAGACTTCTGTACGTTGAGTCAA
GCTTATCAAATTGCGCTGCGGTCAGATTCCAATTCTGACAAGAGTACGTT
AGTCTACTTCTCACAAAGAGGTTAAAAAATTTAANNNNNNNNNNNNNNNN
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ctcagttcattgtacttaacaacatatccaaaaatgaaaaaaatctaagt
ttcaaactattggacctgccccgctcttaaaaaaactggctcttaactCT
TGTAGATAGATTAATTCCATGATTCTGAAGGAGGTTTGTCATATGTGCGA
ATTTTCCAAGTGCCATCTGAATGCGATAGTTGATTTCAATGTCTCCGGTA
TTAGGCGCATTTGGAGAGATGTACAAACCAAGATACTTAAATTCACCTGA
ATTTTTCTACTGGACATTGCGAATATTGATGATGCTATCAGGATAGTTTG
TCTCGAGGTAGCAGTGATTGAGAATCATTGTCttggttttggttttgttg
attCAAAGACCAAATTTAACGAATACGTGCAGTGTTGACGCTGATTGTAG
AGATGAAAGATCAGTCAAGAAAAGTATCAGGTCATCTGCATACCCACACC
ATGGGAGTGATGATTCACCTGATAGCTTCTCGTTCTCATTTCTCATTCAA
ATTCGTTCTGCTCTAGAGATTGATCTTGGATTGATTCAATACTTATGTTT
AAAGAAACTAACCTAGTCAGTAAAGTtacattttttgataaaaactcgCA
TGATGTATTCAATGTAGAGGTTGAACAACAGAAGACTCTCAGGTCCTCCT
TGACGAACACCTGATGAAACATGGAATGAAGTGTTCGCTTCATGGAAGGT
CAAGGATGTTTGACTGTATAACCTTTCTAAGATATCAAATAGTTTTAGGT
CAGCTTTATCAGGAAATCGAATTCTGATTGATTTAAATAGCCAGTCTCTG
GGTGTATGGTCAAATACAGCCGTTAAATAAACAAACAGTAAGTATAGTGG
TTGCGTTTTTCGATTGGATATTTGTTGTGTCCTTTCGATAGTGAAAATCC
CATCTGTTGTacctttgttttttctaaatccGTTTTGTTCATCTGTGATT
TGTGCCTCGTACCACGGTCTGATTCGATCCAGTATGATATTTATCATCAA
TTTAAATTTACATACAGTTGAGCCAATGCTGATTCCCGATAATTGGTTGG
GTCAGATTTAGAACCTTTCCCTTTCCAAAGCGTTTTCAATCTCAAGTTTC
CCCAGGCGCTTGGTAGATTTTCTGCCAATTTATGGATAACTTGGAGCATA
ATTGGGTGCTTGCATTTTTTGAGGATTTCAGGGTCAATGTCATTGCTAGC
TTTGTCTGATTTTAGTTGATGAAGGTGCTTTTGAATTTCCTCGATGGACA
GGGTACCAGTGTCTATAGGGATGTTGGTGGAAATGTTACGAAGCTCATTT
ATAAAATCTGGCACGTTAGTCAAGTTCTTCAGGGATTATGAGATAATCAC
GGCTAGGATTTAAATGTTTATGGAAGTGTTTTAGAAGCTTTTCTGGGGGG
CATTTTGCAGTTGTGCTTCTAAGGGTTGTCTCTTGGTTTTTAGCCCTCAA
AAAGAGTTTGTCGAGTTCTCTATTGATGACAAATTGATTGAATAGTCCCT
TACTATTGTTACGAAGAGTTAATTCATCATTCAATCCTTACAGACGTTTC
AATTCCTCATCGCCATGCCATGGTTAGTATAATCTTGATCTCTCAATTTT
GGGAATAGATTCTTCTGCAGATGAATTTATATACGTAATAAACGATTCAT
TGATGATAGAGTTATTATTTTGAAGTAAATCGATTTGTTCCAGTTTAGTA
ACGGTATTTTCGAGAAATGCGTTATAAATTTGTGGATCCTGTAGACACTT
CAAGTTCAGCTTGTTGCTTTTCGGTGTCCTATTTCTTGAAATGTATCGAC
CAATTTTTGAGCTGGGTGTACAGATGTCTGCTATAAGTAACCGATAGTCA
GAGTCAAAGTCAAAACTGTTGTACACACAACAGTTATTGGCATATTGGCG
AAGCCAGCTACAACATAATACGAAATCGTATACTTTCTTGGTAACTCCAT
CTGGCGAATGCCAGGTGATTTGACGACACTTTTTGTGGGCAAACCAAGTG
TTCAGAACAGATAGTCGATTACGGTTGAAAAATTCATGAAAGCGAAGACC
ATTATTATTTACTATAAGGTCATCGATCAGGGTGTTTTCACGAAAGGAAG
AATTAAAATCACCCAAACAGATTACTTTTCGTGTCTTTTCACAGATGAAT
TGTTTGTTTAGGTTGGCGTAGAAGAGGTTTTTGGATGAGGTCCTATTAAA
TGATACACTACTGTAAATACAGTAAAGACTGAAAACAAacgcaaaaacaa
aacaaacaactaACTGTATTTTGGCACTTACACTCTGAGTATGTAATCCT
TGTAAAATTCCTCTTCTACCGGTACCTAGCAAGGCTCACCTCTGTATCGT
CATATTTCTGCCAGactaccataagttggtctaatatcctattttcaaat
acattttaTCTTCATGCAACCCTATTTATGTTTCTTTCTGTTTTTAGTGG
AAAAGCTGATGCAGTCGATATTAAAGTTGCTGGTATGTATGTTTTGTTTT
ATTGATTGTCACCTTTATAcagccccttctcacagacccggtaggatatt
ttcagtcagtggggataaaaatatcagACTCGATGGTATAGAtattccat
attttttatggctgggtttcaattcttttgttttcaagtcagaaaattca
ttaGGGATGGGAAAAATGGTAAGTATTTTGCAgagaggattggtttattt
gattatcttCAGTGGgcacaaaaattttgaaggatAATTATCCAGCGGGG
ACGAGGACGGTATTTTAGCCaatctttccagtgggaaggggttccagtgg
gtctgtgagaaaggggtggcTTTATATTTCTTTATATTAGAAATCTTTTC
TGTCTCAGTTCAGCTGATTATAAAGATGTTCTTTTGTTAGTCTTTTTTCG
AtgaattatttattttcaattttcagactTTGATGGTTGCATTTTTCACA
TCGGAAACCACNCTTTATATTAGAAATCTTTTCTGTCTCAGTTCAGCTGA
TTATAAAGATGTTCTTTTGTTAGTCTTTTTTCGATGAATTAtttatcttc
aattttcagaCTTTGATGGTTGCATTTTTCACATTGGAAACCAAGACGAA
AACAGAAATAAAATTATTGTAAGTGAGAATtgtaaattttccatttttat
ggAGTCCTCATGAGTAAAAATTTTAACCAGCAACAGTTTTTGCTATTGTT
TAGCTCAGCCATCTTCTACATCCTAAGCAATAGATAAATTCTTGTTTCAT
TTGAGAAATAAGTGACCAATAATATCAAATAATAGATTTTTAACCTTTGT
TGACCTTTGTATATTTCTATAATATTTCTATATTATTTACAGGTTAGCat
ctcattaaaattttaccCAGAACTACAGAAGCATGGCGCAGATGCTGTAA
GTGATTACttttacatacatacatacatacatacatacatacatacatac
atNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GTTAATCCAGTATCCTCAAGTATGACACTTTTCAAGGTAGTGAAAGGTCT
TCCAGTCTTTCTCTTCGAGTCGGGTGACCACATCAATAGCTGCGAGGCAG
GCTCTTCTCGACGTGCTACGTGACCGGCGAGAGCAAGTCGACGTTTTCGT
ATTGTTGCAGAGATTGGAGGAATGTTTCCATAAAGGACTTTGTTAGCCAT
ACGTGTCGTTGGAGGTACGTTGCAGACAACTCTCAgcatttttgtgtatt
ttccgTCAAGGGATTTTGCAAGGGTCTTTGTCATGGTCCAAGAATCANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNACTGTCAGTAGACGACTTACTTTCGAATAATTT
GAGCGTGTCGTTGATTCTTTTCTCTTCAAGATCATCGTGAgttgttttaa
tattttgttgttTGGCTTGGATGCTTTGGACTGGTGCAGTAATCGATTCT
TTCTGACATCNCAGGGCGTTTACTGCGCCCCAAGCTTTTCCAATCCGTAC
ATTCATGTCGTTAGCAGTGTTTGTCAGACCACCCAGGTAGGTAAAATCAT
CGAATTTTTCAACGATACTATCGTTTGAAGTTTTTAAAGGGGTAGAATCA
TTCGAGTTCACAAGCATATACTTTGTTTTCTTTGGATTCAGATAAAGACC
AACCCANTTCTTGGTTAGATACTTTCAAAAATTCTGAGTAGTTTTTTGAC
ATATCAGGAAGAGCATTGAACTTAGCAGCAATGTTTGCACCGATCCTAGA
GCCAAGATCTATGTCATTTCGTATGGCTTGCCAATTAAGACGTTTTGACC
GGTTAGGCTTTGGCTCATTTGAATCATAGTCGATACAATGCGATGATCAC
TTCCAATTGGATTGGAAGATTACTTTTAATGGGGGATAATTTTGTCGAAT
CATCTCACATTTATGTCTTTTCAAGTTTATTGTTCtgttttaatatattt
ttcttcTCATTGATTTCAGAAAATTAAAGGCGAATATGGAGACTTGATGA
TTACACCAGAAAGCGGATATGACATTTCACTTCTTGTCAATTTGGAAGCT
CTCCCTCCTAACTCAGGTATCTTTTACAGGAAAATTGATGAACTTCTTAC
TACTTCTTGTTATGACTGAGGataatttttataaatatacttCATTCTTC
ATTCTATTTTCCTTTCATAAAATTTTTCACCAGCATATTTTATTCTACCC
AATGGTGTGGATTTTTATCATTGCTAGTTTTAGATAGATaatgataattt
tgaaaaaatattttagctgaaaaaggGCCGGCCGGGTAAGGGTGCTTTCA
GACAAAATCTGTACCAAATCGAAAGTGAATTACATTCTTTATTTTgcaag
aattaattttggctaatgagcaaaaaatgttatttttcggAAAGTAATTT
TTGgctaatttagaaaatttttgagacaATTTGccaaattggccaaaatt
tcctTTAAATGTTTAAATTCATTCAAAGGTAGTACTGATGAGTCTGAAAT
AACCCCAAATCTCCTAAGTGGATATAGTatgattgaaatttttattttca
atgtttCAATTCAATAGNGTCTGAAATAACCCCAAATCTCCTAAGAGGAT
ATAGTatgattgaaatttttattatcAATGTTTCAATTCAATAGATGAGC
TAATCAAGAAAATTGGTCTACTAAAGAGGAACTGTTTCGCATCGGTCTTT
GAACGTTATTTCGACTTCTTGGAACGTGAAGAAGACAGTAAAGAGAAAGC
CATTATTAATTACCGTGACGACGAAACAATGTACGTGGAAGCTAAAGCTG
ACCGTGTCACTGTGATCTTTTCCACCGTATTCAAAGATGATGATGACGTA
ATCATTGGCAAAGTTTTCATGCaggtatgaaaatatttttttgaatcaca
attgttttgcttgtccattcttttgaattttctttgattgtttgcttgta
tttcagctgaccattttttgttttacatAGGAACTTATTATTCATAGTTT
CAGTGCAAGAGGCTCAGTAATTGTTCGAGAGGTGAAATAGCCCAACATTT
ATCAGGGGAACAAAAAACTGTTCGAATTATGTGTGTAAGAGTCGTTCACG
TACACCATTTTGTCATCATTTCGATGTACCTCTCTCTGTGAAGATTCTGT
GGAACTAATATGAATGCGATTTTTAGTTTGTAAGGTGCGTCTTTTTTAAT
TCTCAACCTTGTTTTGCAATAGGAATTCCGTGAAGGACGAAGAGCCAGCC
AGACAGCGCCGCAAGTTTTGTTCAGTCACAAAGAACCACCACGCGAATTG
GAAGGAACCAACGCCGCTAGAGGAGACAATATCGGATACATTACTTTCGG
TAAGCTTCCTATTACTTCACACATGCAATTCTATCATAATATAAAAGCTT
CAAAGACATGGTTTTTAGAGAAGATTAGGAAGGATTTCATCTTCAAgcga
aaataaagaaatgtagtgtttccggaaaccggccgcgTATTTTTTTTGAC
CCGGCAgctgtaaatcaagttttgttcgtcAGTAGTTGATATATTAGTAT
TCGGGGCTTACTttatactgtttgtacataaaagttatctttaaagttca
atgatcttaagtaatcaaaaatagcaacaaaaaaaatttttcggccgGCC
Ccatgaaagcttttttccttcacccgcattccggaaacactacatttttt
ggacctaccccggtggggtggaggtcctataaattcacctctgtccgtcc
gtccgtccgttcgttaccagcttttctcgagattgaatcaNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
cgattttcgaaaaaaaaaattttggggcaaatttgggccaaaaaacggct
aaaaaacgggttttttggactttgtgaaaaattggatcatttattttttc
tgattttttgcatggaagtagggtaccatcataggtaaaagatggctcat
gcagatttttgcaaaaaaatttatttggcttaaaaaacgcatgtttatct
ataagaattactattaataagcatacatcaatgttcttagtcaaattact
cacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNgattggctctttcattctttaagactttttgcacaaagatg
cataactataaaccctcgaatgtgacggagcccaattttcgaaaaaaaat
gtttttggacaaatttgggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttgttggctcaa
aaaacgcatgtttatctataagaatcactattaataagcatacattaatg
ttcttagtcaaattactcaatttttttattagatagatgtttttcttgct
cacgagggcttacatttgaagcatatgtgtgtttagaaatgaaattttgg
ttccttggcgtgtttttatagaaaaaactggccaaattcgatattttttt
ataagcacattatcaattacttaggtattagcttttctcgagattggctc
tttcattcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNataactataaaccctcgaatgtgactgag
cccgattttcgaaaaaaaatgtttttgggcaaatttgggccaaaaaacgg
ctaaaaaaagggttttttggacttgaaatattggatcgttgtttttttct
aattttttgcatgaaagtaggtaaaagattggtcaagcagatttttgcaa
aaaaattttcagctcaaaaaacgcatctttatccataagaatcactatta
ataagcatacatcgatgttcttagccaaattactcaattttttgatgaga
tagatgtctttttatgttcacgaagtcttgaatatgaaagaatatttcaa
gagcatgaaattttggtttctaaacgttttttttataagaaacaaacgac
taattttaataaatcgtcactatttgtgttctgaatgattgtttaacgtt
catgctcacgtagatatcaattatatacgtcttaaatgcataaccaggta
ggtccataaaagtatcacttgtttatttcCGCctcatttttaatcttttt
ttcagtacattgaaaattctcaaaaatcgttTGCCTAAGGTTATGGCTGT
GGTATTTATTGCTTTTAGCTATCAAGAAATACCCTGACATATTTTGATCA
TAATGTGTATGTTAATTAACCCcaaacaatttaattttctcaTATATTTC
CCTATATAGTTTTGGAGAAGCGCCACACGAAAGCTGCTGCGCGTGAAAAC
ACTATCAATCTGATCCACACTTTCAGAAATTATTTACATTATCACATTAA
ATGCTCAAAGGTATTGCTTTTGGTATAAATGACCTTACTGAAATTGAAGT
AGATTTGACGGGTTAATGACCCGCTAAATggctgattttaaaatacccgT
CAAAGTTTTTCCATTTAGAATATACATTGGAGTATCttcaactcgaacct
ctataaatcgaatgtctccttaaatcGAACAGGTTTTATGGTCCTTTCAG
ATAACAATGCCTTAAAAAACccactctataactcgaaatttccttactTC
AAACAAATTTGTCTTTAAATTTTCTGGAGAACCCACTGTTTAACTAAAAA
CGGTAATTGTCACGGGTCAGCCTTTTGTTAATATatctaacaaaatttaa
aagagtatatcctaaaaccaaatcgggaaatcaaactggaaagatcggga
aatcgaaccCGACTATCGCGATTGATCggatttacgcacaattacaaatg
aaaaacactgattttaaaaaattccttaaCCGGAGTTTAAGTAGAATGAA
GTTAATcattttcgaaatatttcaatgtttatttttacaaaaattagtag
tatccaaaccCAATTTGACTTTTTCTTCCCGTGCTTAATTAAACCCCCGT
GTTTTAATTTCCAAATGGTGTAATAATTTCTACAACATTTTCTACAGGCT
TACTTACATTCCCGTATGCGTGCCAAGACTTCCGATTTCATCAAAGTATT
AAACCGTGCTCGACCAGAACCCAAGACCACCGAAAAGAAAACCATCACGT
AAGTTGTTAAAATCGTACTACTCTTGTGTGCTTGATTGTAGGGGGTGGAA
TAAAGGCcagggcaaaccgatccaacatttcatccaacatgccatttttc
tgatgttggatgaaatgttggaccggtttgcgtcaattcaattttttaga
aaaaaatgaaaattcaaaaaaagaagaaaaaaatcgtgttggacggtgtt
ggatttggatgaagtttgatcgccatcaaacatttcatccaacatttgcg
gcaagatcaaagaagctctctcattgaattgtgtaatttttcgtgttgga
ttggtttggtttttctttaatttttgaattttcaattttttccaagtcat
gttggatgaaatgttggatcggtttgccccagccttgattttcgcttcat
ccaacgcaagtttttccatcaaacatttcatccaacattggaaaatcatg
ttggatgaaatgttagACTGGTTTGCCCTGCCCCTAAGCAGGGGGATGGG
TACTCCAGATAAAAATCATAATCAAGTGCTATtggtttttggccaatttt
ggcactttgtagcataaaggtcataaaattggggggggggttattATGAA
GTGATatgggggtgattttttccaaaaatagcaaaataactccccctaca
attaagcacacaagagtATTTGTTATTTATTTCCTTAGATCATTTTAAGA
ATAGTTCATTCTGTacactttttaactttttaacgaAATTCATCGTCAAG
ATCTGTTGAAAATACTGGAAAGATTCTTTCATAAGCAGGTTTCCGTCTTA
CCCATCTACCTCCAGGGTGTTTAAATGCTCTGGGGTTCAAATAATGTACA
GGCTAGACCTCTATGATACATTTAGGGATTTTTCacgtaaaagatttttt
ttttcgactttgCATGACTAACTCcgagcatggaggtataaagaaacagg
agaagtatgctattgtaaccatgctcgccctacgattagaaaaattacga
ggtatgcatgctcataatctcatatatcgtgcatttttaatgagctcttt
tgttgataggtgaaatcttattggctaacttaagtgttNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNcctagaatttcttttgattta
ttacataaaagaaatcaaaagactttaacgaccaattaccgacaaattca
tctcctgtctttctttatacctctatgctcCGAGTGTCTCCGGATCTTTT
AAAATGCTCTGACGTTCGATTTTTCTTTACGTTCCATTTCTATTTTTAGT
GGAAAGACATTCACGAGGAACTGATTGTCATTTGGGTGTGGTTTTCCTTG
AATTGTGGGTAATAATGGAGAGCAATCTGTCAATCATGATGGGAAGGATT
TCTCTTGCTGcatttttgtaaacaattttaaattagAAAACTTTTATTCA
ATTTAAATTATCAGCTTTTTAAAGGACGTCTTGATTTGTATGAAATTTCT
CGCTCTTGATTTAACACCTATTATTTTCCTGGATTCTAAGATGAACAATA
GtgatttttttctaagaaatagtgaatttttgataCCCTAGTTTCTTTTG
ATGAATATTTTTcgttttgtcaatattttttttgcaattttttttctcgc
ccCGTCCaacttcaattttattaatttatattagaaaaaaatgcaattca
attttgtttttcgtTATTTGTTTATTAGTAACTAAATATGTCTTTCAAat
tgttcaaaaagaaaataattttagttaCTATGTTTTTGtacaaaataaca
tattttttttttccatttctcgTTACGTCTATTCCCCTAGGTGCCACATT
TTTCATTTAGGTACGCCACAAAATTTAATTAATCAAATGTTTTTATGGTC
TCCCAGAGTGTACTTGAATTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042906XLOC_042906Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068818-exon-scaffold_49-1491911889:886819..887044TCONS_00068818-exon-scaffold_49-1491911889:886819..887044Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1510915933:886819..887044TCONS_00068818-exon-scaffold_49-1510915933:886819..887044Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1575043694:886819..887044TCONS_00068818-exon-scaffold_49-1575043694:886819..887044Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1491911889:896116..896150TCONS_00068818-exon-scaffold_49-1491911889:896116..896150Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1510915933:896116..896150TCONS_00068818-exon-scaffold_49-1510915933:896116..896150Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1575043694:896116..896150TCONS_00068818-exon-scaffold_49-1575043694:896116..896150Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1491911889:896595..896617TCONS_00068818-exon-scaffold_49-1491911889:896595..896617Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1510915933:896595..896617TCONS_00068818-exon-scaffold_49-1510915933:896595..896617Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1575043694:896595..896617TCONS_00068818-exon-scaffold_49-1575043694:896595..896617Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1491911889:896751..896786TCONS_00068818-exon-scaffold_49-1491911889:896751..896786Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1510915933:896751..896786TCONS_00068818-exon-scaffold_49-1510915933:896751..896786Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1575043694:896751..896786TCONS_00068818-exon-scaffold_49-1575043694:896751..896786Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1491911889:897011..897064TCONS_00068818-exon-scaffold_49-1491911889:897011..897064Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1510915933:897011..897064TCONS_00068818-exon-scaffold_49-1510915933:897011..897064Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1575043694:897011..897064TCONS_00068818-exon-scaffold_49-1575043694:897011..897064Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1491911889:899038..899134TCONS_00068818-exon-scaffold_49-1491911889:899038..899134Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1510915933:899038..899134TCONS_00068818-exon-scaffold_49-1510915933:899038..899134Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1575043694:899038..899134TCONS_00068818-exon-scaffold_49-1575043694:899038..899134Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1491911889:899713..899942TCONS_00068818-exon-scaffold_49-1491911889:899713..899942Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1510915933:899713..899942TCONS_00068818-exon-scaffold_49-1510915933:899713..899942Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1575043694:899713..899942TCONS_00068818-exon-scaffold_49-1575043694:899713..899942Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1491911889:900291..900417TCONS_00068818-exon-scaffold_49-1491911889:900291..900417Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1510915933:900291..900417TCONS_00068818-exon-scaffold_49-1510915933:900291..900417Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1575043694:900291..900417TCONS_00068818-exon-scaffold_49-1575043694:900291..900417Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1491911889:903128..903228TCONS_00068818-exon-scaffold_49-1491911889:903128..903228Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1510915933:903128..903228TCONS_00068818-exon-scaffold_49-1510915933:903128..903228Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1575043694:903128..903228TCONS_00068818-exon-scaffold_49-1575043694:903128..903228Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1491911889:903866..903966TCONS_00068818-exon-scaffold_49-1491911889:903866..903966Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1510915933:903866..903966TCONS_00068818-exon-scaffold_49-1510915933:903866..903966Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1575043694:903866..903966TCONS_00068818-exon-scaffold_49-1575043694:903866..903966Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1491911889:906168..906791TCONS_00068818-exon-scaffold_49-1491911889:906168..906791Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1510915933:906168..906791TCONS_00068818-exon-scaffold_49-1510915933:906168..906791Clytia hemisphaericaexon
TCONS_00068818-exon-scaffold_49-1575043694:906168..906791TCONS_00068818-exon-scaffold_49-1575043694:906168..906791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:886819..906791 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
153.264	156.663	112.087	99.88	74.1439	54.7228	121.095	120.843	98.3039	112.708	79.4954	76.3343	68.6977	69.1491	102.526	121.09	107.985	111.009	92.1634	99.1277	89.3823	91.8225	87.9741	88.2423	47.6463	56.0896	111.986	95.5203	123.454	103.505
Blast
[Close]
BLAST of TCONS_00068818 vs. Swiss-Prot (Human)
Match: ARPC2 (Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1)

HSP 1 Score: 417.157 bits (1071), Expect = 2.327e-142
Identity = 191/283 (67.49%), Postives = 236/283 (83.39%), Query Frame = 3 
Query:  153 MILLEINNTIVEETLKSRISQIAANGKADAVDIKVADFDGCIFHIGNQDENRNKIIVSISLKFYPELQKHGADAKIKGEYGDLMITPESGYDISLLVNLEALPPNSDELIKKIGLLKRNCFASVFERYFDFLEREEDSKEKAIINYRDDETMYVEAKADRVTVIFSTVFKDDDDVIIGKVFMQEFREGRRASQTAPQVLFSHKEPPRELEGTNAARGDNIGYITFVLEKRHTKAAARENTINLIHTFRNYLHYHIKCSKAYLHSRMRAKTSDFIKVLNRARPE 1001
            MILLE+NN I+EETL  +    AA  K +AV++  ADFDG ++HI N + ++ K++VSISLKFY ELQ HGAD  +K  YG  ++ PESGY++SLL +LE LP + D ++ + G+LKRNCFASVFE+YF F E  ++ + +A+I+YRDDETMYVE+K DRVTV+FSTVFKDDDDV+IGKVFMQEF+EGRRAS TAPQVLFSH+EPP EL+ T+AA GDNIGYITFVL  RHT A+AR+NTINLIHTFR+YLHYHIKCSKAY+H+RMRAKTSDF+KVLNRARP+
Sbjct:    1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKFYKELQAHGADELLKRVYGSFLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPD 283
The following BLAST results are available for this feature:
BLAST of TCONS_00068818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARPC22.327e-14267.49Actin-related protein 2/3 complex subunit 2 OS=Hom... [more]
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