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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068824 ID=TCONS_00068824|Name=TCONS_00068824|organism=Clytia hemisphaerica|type=transcript|length=740bp
GGAAAGCGCACGAATTTCTTGTATTGTCTGTAGGTTGTCAGTCACCTGTT
GATAAAATGTTGTGTACAAATGATGGATAAGAAGAAGTAGATGTTTATTT
ATCGAAAAGAAGAAAGAGTTCAGCGAGAATGAGCTACAAAAGATTTAGAG
GACACCTTCCTGAAGCAGAGATACTGAATGGACATTCGAAACCTGCTGTT
AAGACATACGGTGTTTTCCCCTTCAACACAATGAAACAAGAGAACGGGAA
GAAAAATACGGAAAATACGGAAATTATTTCAAGTGACAATCTTTTGTACC
GGAAAAAGAAGAGTAAGAAAGTTGGTCATTTTGGAACATTATATTTCATA
GCTGTAGATTAATTCTCTTAGATTTTGAAGATATATTTGATGAatattta
ttttgtaaatttacCCTATTTTCAATGAGACTCTTCAATGTTTGTAAAAA
GAAAGATGTAACTCCTTGAAATAAGACAGTCACAATTGTTTTTGTATCAA
TATTATCTGGAACTATTAATGTTATAACTTTCGATATTATTCGAGTCTGA
AGCGATtgtgtgctcgttgaaaagataatcaggATTGAAATAAGTATCat
caaatagaaaaaattcaaacaagtttggaaattgaagataaaaaatcaaG
GAGAAGAACAAAAGTAATTACTCTAGAATTGTACTAGTCCCGAATTTTCA
CATTCAATTCTAGAACGTTTATGAAAATTTCACTGAAAAC Run BLAST on NCBI transcript from alignment at scaffold_49:84505..85786- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068824 ID=TCONS_00068824|Name=TCONS_00068824|organism=Clytia hemisphaerica|type=transcript|length=1282bp|location=Sequence derived from alignment at scaffold_49:84505..85786- (Clytia hemisphaerica)
GGAAAGCGCACGAATTTCTTGTATTGTCTGTAGGTTGTCAGTCACCTGTT
GATAAAATGTAAGCCTTTCTTTATCCATTTAAGTTTTTATCAAGATGAGC
TTTACGTTAATTGGATTACAATACTGTCGCTGTATAACGAAACAATTGCA
GTTGCCAAAGAGATGTCCTGACTAAAGCCCTTTCACTTCATAGCTCTTTG
TTTTTATATTTGAAATTCTTGTTATACCTATTATTGTTATACCTACTACA
TTATGGTGGTATCATGGTGCGGTATTGATCTCAAAATATAGCGTTCAACA
TAAAAAAAGAAGTGATCTAATTAACAAATCACAACGCATCGACTGTAAAG
CTTTTGATCTATCACCTCGCCAATCTCGTTCCCTGTGTATTATCAGCTTT
TTATGCTTACTGATTGCTCTAAATATTCTCTGGCATCAATCAGTAACGTA
AATAAAGCCTGGAATACACGGGAACGAGGTTGTCACCTTCGAACATCCGC
TTCTAAATCACTGGATCGCATGCTAGCATAGGGTATTTTTCTTAAAAACT
TTCGTGAACTACAAACTAAATGAGCTTCAATATTTCGTCTATCGTTTCAG
GTTGTGTACAAATGATGGATAAGAAGAAGTAGATGTTTATTTATCGAAAA
GAAGAAAGAGTTCAGCGAGAATGAGCTACAAAAGATTTAGAGGACACCTT
CCTGAAGCAGAGATACTGAATGGACATTCGAAACCTGCTGTTAAGACATA
CGGTGTTTTCCCCTTCAACACAATGAAACAAGAGAACGGGAAGAAAAATA
CGGAAAATACGGAAATTATTTCAAGTGACAATCTTTTGTACCGGAAAAAG
AAGAGTAAGAAAGTTGGTCATTTTGGAACATTATATTTCATAGCTGTAGA
TTAATTCTCTTAGATTTTGAAGATATATTTGATGAATATTTATTTTGTAA
ATTTACCCTATTTTCAATGAGACTCTTCAATGTTTGTAAAAAGAAAGATG
TAACTCCTTGAAATAAGACAGTCACAATTGTTTTTGTATCAATATTATCT
GGAACTATTAATGTTATAACTTTCGATATTATTCGAGTCTGAAGCGATTG
TGTGCTCGTTGAAAAGATAATCAGGATTGAAATAAGTATCATCAAATAGA
AAAAATTCAAACAAGTTTGGAAATTGAAGATAAAAAATCAAGGAGAAGAA
CAAAAGTAATTACTCTAGAATTGTACTAGTCCCGAATTTTCACATTCAAT
TCTAGAACGTTTATGAAAATTTCACTGAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068824-exon-scaffold_49-1575043694:85729..85786 | TCONS_00068824-exon-scaffold_49-1575043694:85729..85786 | Clytia hemisphaerica | exon |
| TCONS_00068824-exon-scaffold_49-1575043694:84505..85186 | TCONS_00068824-exon-scaffold_49-1575043694:84505..85186 | Clytia hemisphaerica | exon |
| TCONS_00068824-exon-scaffold_49-1510915933:85729..85786 | TCONS_00068824-exon-scaffold_49-1510915933:85729..85786 | Clytia hemisphaerica | exon |
| TCONS_00068824-exon-scaffold_49-1510915933:84505..85186 | TCONS_00068824-exon-scaffold_49-1510915933:84505..85186 | Clytia hemisphaerica | exon |
| TCONS_00068824-exon-scaffold_49-1491911889:85729..85786 | TCONS_00068824-exon-scaffold_49-1491911889:85729..85786 | Clytia hemisphaerica | exon |
| TCONS_00068824-exon-scaffold_49-1491911889:84505..85186 | TCONS_00068824-exon-scaffold_49-1491911889:84505..85186 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:84505..85786 - |
Blast
The following BLAST results are available for this feature:
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