TCONS_00068832 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00068832
Unique Name	TCONS_00068832
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1285

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_49:98222..101962-
coding sequence from alignment at scaffold_49:98222..101962-

transcript sequence

>TCONS_00068832 ID=TCONS_00068832|Name=TCONS_00068832|organism=Clytia hemisphaerica|type=transcript|length=1285bp
actttctaaatatcacaACTCCAAGCaatttgggacatttgttcggcctc
aagacgtcgggaaacgtctgaactttttcgtgggtcacccgggtATATTT
TCCATCCCTTCCCCATGGGGATTAGGTATTCCTTGTTTATCAAGCACCTG
GGATTAGACACTCCCTAATAATAGAAtctattgttgttgttttactACTT
CTGAGCCTTTAGTTTTTTACCATCAGACAATCTGCACAtcacaaaatttc
tttccttgtCAATATTAATGGCACTGGCCAaagttattctttgtaaaata
tacatttttttatatttattgtaCATAGAACACAAAAGAATAACTCTAAC
ACTGAAGCTTCTGAACCATTCcccataaaaaaacaaacacaacATAACTA
TGGCTCGTCTACGGGTATCACTAATAGACTTCCACATTTACGTCTTATAT
TTTCATGAACAATAACGTCATTGTTTCCCTTTTCATCTTTCTTATCTTAt
ttattgttctttttgttttgtttagaaaaataaagataaattgATTAATA
AAAAACATGGCCTCAATCACAAGCAAGTTTGGGTTACCTTTGAGACAGAC
AATTCGACATTGCACCAGTCAAATGAAATATGATGGTCCTGTTGAAAAGT
GTGTGAATAGTGTACAAATCCTTGGTCGAGTCGGTCAAGACCCAATCACT
CGTGgtgaaaatgacaattttgtaACCTTCAGTATGGCTACATCTAAAAC
GTATGCAAAGAAAAATATGACAGGGGAAACTGACTACAACACACGAACGC
AATGGCATAACATCACAGTCTTTAGACCTTTTCTCATTGAGCGTGTCCAA
AAACAAATCTCTAAAGGGACAAGAGTGATGGTACAAGGAGCCATAGAATA
TGTTGATTATACAAAACCTGACGGAAATAGAGTTCTGATGACCAGGATTG
TACCAGATGACATTTTCATTCTCTCCGGCACTGACCACGATGCACAAACT
CACTGATCAAATCACGTGACATACTAACCAAAAGAGAAAATCAAATAGgt
ttatattttacaaaggaagaagaaaatatttatgttTTATAGTAGAGATT
TTTTGTAGccttttttatttcacttttttacaagaaagaactctttttta
acttttttttgttactGAACCAATGACAATGTCGATTGTTTTCCAAACCC
CTCAGATTATAGATTCCAACCTGGTTATGTAATGGCTCATAGAACATGTT
ACAAGACAAATAAAACATGATGGATTTGTTTTTCT

Run BLAST on NCBI

protein sequence of TCONS_00068832-protein

>TCONS_00068832-protein ID=TCONS_00068832-protein|Name=TCONS_00068832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MASITSKFGLPLRQTIRHCTSQMKYDGPVEKCVNSVQILGRVGQDPITRG
ENDNFVTFSMATSKTYAKKNMTGETDYNTRTQWHNITVFRPFLIERVQKQ
ISKGTRVMVQGAIEYVDYTKPDGNRVLMTRIVPDDIFILSGTDHDAQTH

Run BLAST on NCBI

transcript from alignment at scaffold_49:98222..101962-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00068832 ID=TCONS_00068832|Name=TCONS_00068832|organism=Clytia hemisphaerica|type=transcript|length=3741bp|location=Sequence derived from alignment at scaffold_49:98222..101962- (Clytia hemisphaerica)
ACTTTCTAAATATCACAACTCCAAGCAATTTGGGACATTTGTTCGGCCTC
AAGACGTCGGGAAACGTCTGAACTTTTTCGTGGGTCACCCGGGTATATTT
TCCATCCCTTCCCCATGGGGATTAGGTATTCCTTGTTTATCAAGCACCTG
GGATTAGACACTCCCTAATAATAGAATCTATTGTTGTTGTTTTACTACTT
CTGAGCCTTTAGTTTTTTACCATCAGACAATCTGCACATCACAAAATTTC
TTTCCTTGTCAATATTAATGGCACTGGCCAAAGTTATTCTTTGTAAAATA
TACATTTTTTTATATTTATTGTACATAGAACACAAAAGAATAACTCTAAC
ACTGAAGCTTCTGAACCATTCCCCATAAAAAAACAAACACAACATAACTA
TGGCTCGTCTACGGGTATCACTAATAGACTTCCACATTTACGTCTTATAT
TTTCATGAACAATAACGTCATTGTTTCCCTTTTCATCTTTCTTATCTTAT
TTATTGTTCTTTTTGTTTTGTTTAGAAAAATAAAGATAAATTGATTAATA
AAAAACATGGCCTCAATCACAAGCAAGTTTGGGTTACCTTTGAGACAGGT
ATGAGCGTTTTCTTTTTTTTTTGACTTTTGTATTTAATGTATTTAAATAG
TACGTTTTATCCCAGTGATAAATTAAGTTGTAATAGATAAATTCTGACTG
AATTTTTTCATTGATCTTCGATTTCCAATTTTCAGACAATTCGACATTGC
ACCAGTCAAATGAAATATGATGGTCCTGTTGAAAAGTGTAAGGAATCAAA
ACAAACTTTTCAATTAGTTTTTTTTTCAATTCGGTTCTTGTTGCATATTT
TCATTTCACAAAATATAAAGAAGGATTTATTCCATCAAATTTCAATACAG
GGTGAGGGTTGACAAACCTTTTCAAGTCAAAAAAGATTCTTAATAAATGT
GTAGATACCCCCTGAAAAATGACAAAATTTCAAGGTGAACCCTTGGAAAT
TTTTTTAACTTCAACCCCCTTTAACCTCTTTTAAACCCTCCCTTGAAATA
CTTCTCGGATTATCCCCTGGAAATTTTCGTCCACCCTCTGTATGGAGATG
AAATAGAATGGCCCAATGACCTCTCATTTTCTTTAGGTGTGAATAGTGTA
CAAATCCTTGGTCGAGTCGGTCAAGACCCAATCACTCGTGGTGAAAATGA
CAATTTTGTAACCTTCAGTATGGCTACATCTAAAACGTATGCAAAGAAAA
ATATGACAGGGGAAACTGGTTTGTAATCAATTTATCTGATAGTTCAATAA
CATCAATAATCTGTGAATGACAAAGTGCTCTATACCAAGGTAGAGCTGAA
TTAATTTAAAATGTATATTTCTTCAAAAATCAAAACAACATTACAGCTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGATGTGTGAT
GAATAAAAAATTTTGAACAAATTTCTGCTCTAAAAACATATAAAAGGACG
ATTAATTGACAGGTTGTAAAAGTGATAAATAGTAATAAAAAATGAGTTAA
TTGGTTAAAAAGTATGTATATAAATTGTGTCTAGGGAAATTGGTTTAAAT
AAAATGTTGATTTTGATAATAAAATACAATAAAGGAACGTGAAAGTTATC
ACCCATCTGGAGGGACTGTTTTGTAATTTTCCAATAAGAATTTGTTAACG
TGTCGGCATTTTGAAATTAATTCAGATTTTGTGTTAACGAGTTCACGCTT
GGAGGTGATTATATTCACTTTTTCAGTTAAGCATAAATTGCAATTTATGA
TACAATTTATATACATACATCTTTATCTCTACTTTTATGTAGTAATGACT
TTCTGACGACTCGGTATTTTCTTTCTATTTTCAGACTACAACACACGAAC
GCAATGGCATAACATCACAGTCTTTAGACCTTTTCTCATTGAGCGTGTCC
AAAAACAAATCTCTAAAGGGTATGATTAATTTTTCATTCATCAAACTAAA
AATTTGATTAGTATCGTTTCAAGGGTATTTTTAAGTACTTCCTTCATCTC
GTATACGTTTTATTACTTTATTTCCGATAGGACAAGAGTGATGGTACAAG
GAGCCATAGAATATGTTGATTATACAAAACCTGACGGAAATAGAGTTCTG
ATGACCAGGATTGTACCAGGTACTAATTTTGCGGTTCATTTTAAACCATT
TTACAAGCTTTTTTCATAAGAATATACTTTATAAGAATATTCATGATGAA
ATTGGCCGGAAGATAAAGAATATGGTAAAACCACCATCATGGTTCCACAA
AAATGCCAAATTTTTGTCTAAGGTATCTTTAACATGCTAGATTTTGGCTG
GGTTTGGATCCAAACCTGAGAATACCGTAAGAATATTTCAGGATGGTTTT
TCCCAAAAAGTTAGGATATTCATGATGAATAGGACAAACACCATTCTTAT
AAATAAAGCGTGTACGCCACTTTTCTCCAACAATGTTCCATCTTTTTCAC
AATCACCTCAGACTTCTTTTTGTTTCTGTATAATTTCTATCAATTGCTGT
TATTAAAATTTGGTCTAAGAAAGGCTATCGAAACTTACACCCTCATTAAT
CATTGAACCCAATTAATTAAACCGAGTCGTACTCAAAAAGAAAAAAGAAC
TAATTCCGAGAAATCGCTAAAAACTTTAAAATCGAATTATCAAAATTAGC
ATGGTTACACGAAAAGCGTTAAAATCTGAAAACTCTAACAAAGTAGTTTC
GATTAACATGGCTATGCTGAAGAAATCAGTGCTGGGCTTTAGAGTCATAC
ACTTTTCTCTTTTATAAGAGCAATGCCGAGCCTAAAATTACTCAATTTCA
AGCAATTTAGAGTTCTAGTAAAAATTGGGTGAAAGCCTAAAATACCTCAA
ATATTACACCCAAAAATTAGGTGTAAAAAGGTGTAAACCAAAAGATTTTG
CTTCATTCTGTGAAAAGTAATTTGAAAATTTTGAAGAGCTTTGACCCTCG
GTAAGAAGAACCGTTTCCAATTTAACTTTTCGTTTCTATTTCCAGAGGAA
TTCTGTTCTTAATTAACGAAGACTTGAATATTTGATTTAATAAACAATTT
TAAACAATCTTTATAAGTGAATCATTAGATGATCTTCCTTTGATCCTAAC
ATTTCATCCAATTGACCAGATTTTATAAATGAGTAAAGTTCATCCTTTCT
GATGCTAAATTCGTTTTTTTTGTATACTGTACTTGTGAAAATGCACTCAA
AAAGAGAATTACGCCTTGTAGTTGACTTCCTCAATCAACGATAATCTTTG
TGTTTTTTTCAGATGACATTTTCATTCTCTCCGGCACTGACCACGATGCA
CAAACTCACTGATCAAATCACGTGACATACTAACCAAAAGAGAAAATCAA
ATAGGTTTATATTTTACAAAGGAAGAAGAAAATATTTATGTTTTATAGTA
GAGATTTTTTGTAGCCTTTTTTATTTCACTTTTTTACAAGAAAGAACTCT
TTTTTAACTTTTTTTTGTTACTGAACCAATGACAATGTCGATTGTTTTCC
AAACCCCTCAGATTATAGATTCCAACCTGGTTATGTAATGGCTCATAGAA
CATGTTACAAGACAAATAAAACATGATGGATTTGTTTTTCT

Coding sequence (CDS) from alignment at scaffold_49:98222..101962-

>TCONS_00068832 ID=TCONS_00068832|Name=TCONS_00068832|organism=Clytia hemisphaerica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_49:98222..101962- (Clytia hemisphaerica)
ATGACATTTTCATTCTCTCCGGCACTGACCACGATGCACAAACTCACTGA
GACAAGAGTGATGGTACAAGGAGCCATAGAATATGTTGATTATACAAAAC
CTGACGGAAATAGAGTTCTGATGACCAGGATTGTACCAGACTACAACACA
CGAACGCAATGGCATAACATCACAGTCTTTAGACCTTTTCTCATTGAGCG
TGTCCAAAAACAAATCTCTAAAGGGTGTGAATAGTGTACAAATCCTTGGT
CGAGTCGGTCAAGACCCAATCACTCGTGGTGAAAATGACAATTTTGTAAC
CTTCAGTATGGCTACATCTAAAACGTATGCAAAGAAAAATATGACAGGGG
AAACTGACAATTCGACATTGCACCAGTCAAATGAAATATGATGGTCCTGT
TGAAAAGTATGGCCTCAATCACAAGCAAGTTTGGGTTACCTTTGAGACAG
ATGACATTTTCATTCTCTCCGGCACTGACCACGATGCACAAACTCACTGA
GACAAGAGTGATGGTACAAGGAGCCATAGAATATGTTGATTATACAAAAC
CTGACGGAAATAGAGTTCTGATGACCAGGATTGTACCAGACTACAACACA
CGAACGCAATGGCATAACATCACAGTCTTTAGACCTTTTCTCATTGAGCG
TGTCCAAAAACAAATCTCTAAAGGGTGTGAATAGTGTACAAATCCTTGGT
CGAGTCGGTCAAGACCCAATCACTCGTGGTGAAAATGACAATTTTGTAAC
CTTCAGTATGGCTACATCTAAAACGTATGCAAAGAAAAATATGACAGGGG
AAACTGACAATTCGACATTGCACCAGTCAAATGAAATATGATGGTCCTGT
TGAAAAGTATGGCCTCAATCACAAGCAAGTTTGGGTTACCTTTGAGACAG
ATGACATTTTCATTCTCTCCGGCACTGACCACGATGCACAAACTCACTGA
GACAAGAGTGATGGTACAAGGAGCCATAGAATATGTTGATTATACAAAAC
CTGACGGAAATAGAGTTCTGATGACCAGGATTGTACCAGACTACAACACA
CGAACGCAATGGCATAACATCACAGTCTTTAGACCTTTTCTCATTGAGCG
TGTCCAAAAACAAATCTCTAAAGGGTGTGAATAGTGTACAAATCCTTGGT
CGAGTCGGTCAAGACCCAATCACTCGTGGTGAAAATGACAATTTTGTAAC
CTTCAGTATGGCTACATCTAAAACGTATGCAAAGAAAAATATGACAGGGG
AAACTGACAATTCGACATTGCACCAGTCAAATGAAATATGATGGTCCTGT
TGAAAAGTATGGCCTCAATCACAAGCAAGTTTGGGTTACCTTTGAGACAG
ATGACATTTTCATTCTCTCCGGCACTGACCACGATGCACAAACTCACTGA
GACAAGAGTGATGGTACAAGGAGCCATAGAATATGTTGATTATACAAAAC
CTGACGGAAATAGAGTTCTGATGACCAGGATTGTACCAGACTACAACACA
CGAACGCAATGGCATAACATCACAGTCTTTAGACCTTTTCTCATTGAGCG
TGTCCAAAAACAAATCTCTAAAGGGTGTGAATAGTGTACAAATCCTTGGT
CGAGTCGGTCAAGACCCAATCACTCGTGGTGAAAATGACAATTTTGTAAC
CTTCAGTATGGCTACATCTAAAACGTATGCAAAGAAAAATATGACAGGGG
AAACTGACAATTCGACATTGCACCAGTCAAATGAAATATGATGGTCCTGT
TGAAAAGTATGGCCTCAATCACAAGCAAGTTTGGGTTACCTTTGAGACAG
ATGACATTTTCATTCTCTCCGGCACTGACCACGATGCACAAACTCACTGA
GACAAGAGTGATGGTACAAGGAGCCATAGAATATGTTGATTATACAAAAC
CTGACGGAAATAGAGTTCTGATGACCAGGATTGTACCAGACTACAACACA
CGAACGCAATGGCATAACATCACAGTCTTTAGACCTTTTCTCATTGAGCG
TGTCCAAAAACAAATCTCTAAAGGGTGTGAATAGTGTACAAATCCTTGGT
CGAGTCGGTCAAGACCCAATCACTCGTGGTGAAAATGACAATTTTGTAAC
CTTCAGTATGGCTACATCTAAAACGTATGCAAAGAAAAATATGACAGGGG
AAACTGACAATTCGACATTGCACCAGTCAAATGAAATATGATGGTCCTGT
TGAAAAGTATGGCCTCAATCACAAGCAAGTTTGGGTTACCTTTGAGACAG
ATGACATTTTCATTCTCTCCGGCACTGACCACGATGCACAAACTCACTGA
GACAAGAGTGATGGTACAAGGAGCCATAGAATATGTTGATTATACAAAAC
CTGACGGAAATAGAGTTCTGATGACCAGGATTGTACCAGACTACAACACA
CGAACGCAATGGCATAACATCACAGTCTTTAGACCTTTTCTCATTGAGCG
TGTCCAAAAACAAATCTCTAAAGGGTGTGAATAGTGTACAAATCCTTGGT
CGAGTCGGTCAAGACCCAATCACTCGTGGTGAAAATGACAATTTTGTAAC
CTTCAGTATGGCTACATCTAAAACGTATGCAAAGAAAAATATGACAGGGG
AAACTGACAATTCGACATTGCACCAGTCAAATGAAATATGATGGTCCTGT
TGAAAAGTATGGCCTCAATCACAAGCAAGTTTGGGTTACCTTTGAGACAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042912	XLOC_042912	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00068832-protein	TCONS_00068832-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_49	supercontig	scaffold_49:98222..101962 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.0318	50.7818	15.3371	12.4922	31.8656	23.853	19.2461	20.3785	18.7318	20.0785	21.2748	13.2891	12.0805	14.0653	12.1646	13.6835	21.47	14.9251	2.42231	5.59814	9.27472	8.31024	24.8046	18.4229	14.6695	19.1018	21.4078	17.252	14.3291	15.6762

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR011344	ssDNA-bd
IPR000424	Primosome_PriB/ssb
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003697	single-stranded DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006260	DNA replication

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
molecular_function	GO:0003697	single-stranded DNA binding

Blast

[Close]

BLAST of TCONS_00068832 vs. Swiss-Prot (Human)
Match: SSBP (Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.288e-18
Identity = 50/133 (37.59%), Postives = 77/133 (57.89%), Query Frame = 2

Query:  590 LRQTIRHCTSQMKYDGPVEKCVNSVQILGRVGQDPITRG-ENDNFVT-FSMATSKTY--AKKNMTGETDYNTRTQWHNITVFRPFLIERVQKQISKGTRVMVQGAIEYVDYTKPDGNRVLMTRIVPDDIFILS 976
            LRQ +RH  S+      +E+ +N V +LGRVGQDP+ R  E  N VT FS+AT++ +      +    D + +T WH I+VFRP L +   + + KG+R+ ++G I+Y +Y   +  R   T I+ D+I  LS
Sbjct:   10 LRQFVRH-ESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLS 141

The following BLAST results are available for this feature:

BLAST of TCONS_00068832 vs. Swiss-Prot (Human)

BLAST of TCONS_00068832 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SSBP	2.288e-18	37.59	Single-stranded DNA-binding protein, mitochondrial...	[more]

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TCONS_00068832 (transcript) - C. hemisphaerica