TCONS_00068841 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068841
Unique NameTCONS_00068841
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1627

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068841 ID=TCONS_00068841|Name=TCONS_00068841|organism=Clytia hemisphaerica|type=transcript|length=1627bp
ATTAATATCAAAATTTAGACAGCTTTTTACTGTAAATTGACTTTTAAGAT
AAACTTTTGATATTTAAGGAAGCGGCTCCGATTTATGACCTTTCGCACAA
AGACCAATGGGAAATTCCACGTGATAAATTGACAATGAAAAAGAAACTCG
GTTCTGGACAATTTGGCGAAGTGTGGGAGGGTGTGTGGAATAACCAAACG
CCCGTCGCCATCAAATCCCTCAAAGAAGGTTCCATGGATAAAGAACAATT
CCTTGATGAAgccgccattatgaaaaaattacgtcatgataAATTGATCA
AATTATACGCAGTGGTGACGATACGAGAACCTATTCTCATTATCACGGAA
CTTATGAAAAACGGTTCTCTTTTGGATTATTTTCGACATGGAGAAGGAAA
ACATCTGCAGTTTCACGAACTAGTGGATATTTGTGCGCAAGTAGCGCAAG
GAATGTCTTTCCTCGAATCCAAAAACTTTATTCATCGAGATTTAGCTGCT
AGGAATATATTGGTCGGCGAAAATAACATCGTCAAAATTGCTGACTTTGG
TTTATCGCGGTGCATCGTGGATGGAGATTATGACGCACAACAAGGCTCCA
GGTTCCCAATCAAGTGGACAGCACCGGAATCGTGCACTTACAATAAATTC
ACCACCAAATCGGACGTCTGGTCATTCGGTATTTTCATGTATGAGTGTGT
GACTTACGGGAAAACACCCTACGCTGCCATGTCCAATGTAGAGACGATTC
GCGCAGTGGAGCATGGTTACCGGTTACCGAAACCACGTGACTGTCCGGAC
GAATTTTACGACGAGATGCTTCATTGTTGGAACGCCACACCAGAAGAACG
CCCCACTTTCGAAACGCTGCAATGGACGCTGGAAGAATGGTTCCAAGATA
AACGCCAATATGCCGATGAGTAACTCCTTTCATTATTTTCGTATGTTTAA
CAATGCAGcaaatattattatattttttcaatgttAGCTCGGAAGAATTG
CATAAAATTGCAGTGCTTTGAAATGCAGCTTTAAGCGCTGCGTTTGGATT
TCTGCAGCGAGACTTCTCttttaaagatgaaaattgaGATTGAACATTGg
acaaaatttccaagaaaGTTGATTCAACAGAGCTGAAAATTTGACAGCAC
TGTAACCTTATTATGTAATGCCAACTGAAAATAAGTAGCTCacttgtttt
caaatttagaaatcttCTGCGTACCTTCTCCAATGAAAGGAGAAGCGAAG
TAATCGTGGAGTGAAAAATACTTAATAGGCAAGGATAAGTAATTATGATT
TCATGGGTTGAACCTCCTGAAAGGGAAAAGTCTTTATGATTGAGACAAAT
TAGAAATAATGAAaccttaaaaaaaccgagtgaacatcacttgcctcgta
ctCAAACAAATATCCATGGTGATCATGTCCctttgagacattaaatgatt
ttttatgaatagaaagtagttgtaataaaatccactgggagttgatcacc
atggcaataatttcaaaacaaggcaagtgatgttcgtgacgtaatttatg
aaaagtgaTTTGCATTGATGGGGGTATCACCATGCAGAGGATTGTGAGAT
GAAAAATTcctattcttttcattttct
Run BLAST on NCBI

protein sequence of TCONS_00068841-protein

>TCONS_00068841-protein ID=TCONS_00068841-protein|Name=TCONS_00068841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
MKKKLGSGQFGEVWEGVWNNQTPVAIKSLKEGSMDKEQFLDEAAIMKKLR
HDKLIKLYAVVTIREPILIITELMKNGSLLDYFRHGEGKHLQFHELVDIC
AQVAQGMSFLESKNFIHRDLAARNILVGENNIVKIADFGLSRCIVDGDYD
AQQGSRFPIKWTAPESCTYNKFTTKSDVWSFGIFMYECVTYGKTPYAAMS
NVETIRAVEHGYRLPKPRDCPDEFYDEMLHCWNATPEERPTFETLQWTLE
EWFQDKRQYADE
Run BLAST on NCBI

transcript from alignment at scaffold_49:254268..257037-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068841 ID=TCONS_00068841|Name=TCONS_00068841|organism=Clytia hemisphaerica|type=transcript|length=2770bp|location=Sequence derived from alignment at scaffold_49:254268..257037- (Clytia hemisphaerica)
ATTAATATCAAAATTTAGACAGCTTTTTACTGTAAATTGACTTTTAAGAT
AAACTTTTGATATTTAAGGAAGCGGCTCCGATTTATGACCTTTCGCACAA
AGACCAATGGGAAATTCCACGTGATAAATTGACAATGAAAAAGAAACTCG
GTTCTGGACAATTTGGCGAAGTGTGGGAGGGTGTGTGGAATAACCAAACG
CCCGTCGCCATCAAATCCCTCAAAGAAGGTTCCATGGATAAAGAACAATT
CCTTGATGAAGCCGCCATTATGAAAAAATTACGTCATGATAAATTGATCA
AATTATACGCAGTGGTGACGATACGAGAACCTATTCTCATTATCACGGAA
CTTATGAAAAACGGTTCTCTTTTGGATTATTTTCGACATGGAGAAGGAAA
ACATCTGCAGTTTCACGAACTAGTGGATATTTGTGCGCAAGTAGCGCAAG
GAATGTCTTTCCTCGAATCCAAAAACTTTATTCATCGAGATTTAGCTGCT
AGGAATATATTGGTCGGCGAAAATAACATCGTCAAAATTGCTGACTTTGG
TAAGAAAATTTGGTTGGGGCCTAGTCACAGATATCAGATGTATAAAACAC
TAGATGTGTCCTACTTTCAGCAAAGATGGTGGGTTATTTTGCTTCCCCTG
CCGTTGCTCGGGAAATACAGTAGTTCTATCTAGTGTTTTATATACGATAT
CTGTGGGCCTACCCCGGCCATTTATCTAGCTGCCAAATATTTCATCCTTT
TCGATTTTTTGCGGAGAAAACGGCCATGGCATTTGGAACTCTTGCGAACC
TCTATGAAGCATGAAGTGACATCATTTTTCTCTACTTCTTCTTCAGGTTT
ATCGCGGTGCATCGTGGATGGAGATTATGACGCACAACAAGGCTCCAGGT
TCCCAATCAAGTGGACAGCACCGGAATCGTGCACTTACAATAAATTCACC
ACCAAATCGGACGTCTGGTCATTCGGTATTTTCATGTATGAGTGTGTGAC
TTACGGGAAAACACCCTACGCTGCCATGTCCAATGTAGAGGTGAGAAAAT
TATAACACATCTTTTTCGAAAGATTTTTCAGACCTATGTTTTTCAGTATA
CCGTATACAGTATGTATTTATTGATTTTTGTGTGGATTAATTTTCTCGAA
TTCTGGCCATTTTCGTGAAAAAAGTCCTCGCAAAACACCTAGGAAAATGA
AAGAAATTGGGTGAAAAAGAGGTCAATTCGCCAAAATTTTGGATTCTCAA
TTCGCGAAAAAAAAGTCCACGCGAACATTAATCCACGTAAAATATAATCA
CAGAGGACTGAAGATAAGTTCATACTTTTATGTCTAAACATTTAAAAAGC
TTTTGTCTTTCTAGTACTTTTAAGTACCAGAAATTAAAAAGTGGGTCAGT
CGCACTATGGGGATTTACATCAAATTAGTTTAATATATATTTTATATAAA
GTAGATTCCCGATTATTCGAACCTGCACTTATTCGAATAATTCGGTTATT
TGAAGTGAGATGGCGTTCCCCTTGGATCTGCTTACTCAACCCAGGCAAAA
ATACTCTCGGTTATTCTAACCTCAGTTATTTGAACTTTCAGTTATTCGAA
GCGATTTCTATTCCCCTTGGGGGTACATTATAGGCTAAATCACCCTCAGT
TATTTGAACTTTCAGTTATTCGAAGCGATTTCCATTCCCCTTGGGGGTAC
ATTATAGGCTAAATCACCCTCAGTTATTCGAATTTTTCTTATTGGGAGAT
CGTCGAACGGTTATTCGAAGTAGATTCTCAACCCCCTTGGAGCTTCGAAT
AACCGGGAGTTTACTGTATATTTCATTCAATTTGATCTAGAAACCTAAAT
AAAGTTCCTTGATTTGAAATAACTGTTTCTTTTCAGACGATTCGCGCAGT
GGAGCATGGTTACCGGTTACCGAAACCACGTGACTGTCCGGACGAATTTT
ACGACGAGATGCTTCATTGTTGGAACGCCACACCAGAAGAACGCCCCACT
TTCGAAACGCTGCAATGGACGCTGGAAGAATGGTTCCAAGATAAACGCCA
ATATGCCGATGAGTAACTCCTTTCATTATTTTCGTATGTTTAACAATGCA
GCAAATATTATTATATTTTTTCAATGTTAGCTCGGAAGAATTGCATAAAA
TTGCAGTGCTTTGAAATGCAGCTTTAAGCGCTGCGTTTGGATTTCTGCAG
CGAGACTTCTCTTTTAAAGATGAAAATTGAGATTGAACATTGGACAAAAT
TTCCAAGAAAGTTGATTCAACAGAGCTGAAAATTTGACAGCACTGTAACC
TTATTATGTAATGCCAACTGAAAATAAGTAGCTCACTTGTTTTCAAATTT
AGAAATCTTCTGCGTACCTTCTCCAATGAAAGGAGAAGCGAAGTAATCGT
GGAGTGAAAAATACTTAATAGGCAAGGATAAGTAATTATGATTTCATGGG
TTGAACCTCCTGAAAGGGAAAAGTCTTTATGATTGAGACAAATTAGAAAT
AATGAAACCTTAAAAAAACCGAGTGAACATCACTTGCCTCGTACTCAAAC
AAATATCCATGGTGATCATGTCCCTTTGAGACATTAAATGATTTTTTATG
AATAGAAAGTAGTTGTAATAAAATCCACTGGGAGTTGATCACCATGGCAA
TAATTTCAAAACAAGGCAAGTGATGTTCGTGACGTAATTTATGAAAAGTG
ATTTGCATTGATGGGGGTATCACCATGCAGAGGATTGTGAGATGAAAAAT
TCCTATTCTTTTCATTTTCT

Coding sequence (CDS) from alignment at scaffold_49:254268..257037-

>TCONS_00068841 ID=TCONS_00068841|Name=TCONS_00068841|organism=Clytia hemisphaerica|type=CDS|length=2367bp|location=Sequence derived from alignment at scaffold_49:254268..257037- (Clytia hemisphaerica)
ACGATTCGCGCAGTGGAGCATGGTTACCGGTTACCGAAACCACGTGACTG
TCCGGACGAATTTTACGACGAGATGCTTCATTGTTGGAACGCCACACCAG
AAGAACGCCCCACTTTCGAAACGCTGCAATGGACGCTGGAAGAATGGTTC
CAAGATAAACGCCAATATGCCGATGAGTAAGTTTATCGCGGTGCATCGTG
GATGGAGATTATGACGCACAACAAGGCTCCAGGTTCCCAATCAAGTGGAC
AGCACCGGAATCGTGCACTTACAATAAATTCACCACCAAATCGGACGTCT
GGTCATTCGGTATTTTCATGTATGAGTGTGTGACTTACGGGAAAACACCC
TACGCTGCCATGTCCAATGTAGAGATGAAAAAGAAACTCGGTTCTGGACA
ATTTGGCGAAGTGTGGGAGGGTGTGTGGAATAACCAAACGCCCGTCGCCA
TCAAATCCCTCAAAGAAGGTTCCATGGATAAAGAACAATTCCTTGATGAA
GCCGCCATTATGAAAAAATTACGTCATGATAAATTGATCAAATTATACGC
AGTGGTGACGATACGAGAACCTATTCTCATTATCACGGAACTTATGAAAA
ACGGTTCTCTTTTGGATTATTTTCGACATGGAGAAGGAAAACATCTGCAG
TTTCACGAACTAGTGGATATTTGTGCGCAAGTAGCGCAAGGAATGTCTTT
CCTCGAATCCAAAAACTTTATTCATCGAGATTTAGCTGCTAGGAATATAT
TGGTCGGCGAAAATAACATCGTCAAAATTGCTGACTTTGACGATTCGCGC
AGTGGAGCATGGTTACCGGTTACCGAAACCACGTGACTGTCCGGACGAAT
TTTACGACGAGATGCTTCATTGTTGGAACGCCACACCAGAAGAACGCCCC
ACTTTCGAAACGCTGCAATGGACGCTGGAAGAATGGTTCCAAGATAAACG
CCAATATGCCGATGAGTAAGTTTATCGCGGTGCATCGTGGATGGAGATTA
TGACGCACAACAAGGCTCCAGGTTCCCAATCAAGTGGACAGCACCGGAAT
CGTGCACTTACAATAAATTCACCACCAAATCGGACGTCTGGTCATTCGGT
ATTTTCATGTATGAGTGTGTGACTTACGGGAAAACACCCTACGCTGCCAT
GTCCAATGTAGAGATGAAAAAGAAACTCGGTTCTGGACAATTTGGCGAAG
TGTGGGAGGGTGTGTGGAATAACCAAACGCCCGTCGCCATCAAATCCCTC
AAAGAAGGTTCCATGGATAAAGAACAATTCCTTGATGAAGCCGCCATTAT
GAAAAAATTACGTCATGATAAATTGATCAAATTATACGCAGTGGTGACGA
TACGAGAACCTATTCTCATTATCACGGAACTTATGAAAAACGGTTCTCTT
TTGGATTATTTTCGACATGGAGAAGGAAAACATCTGCAGTTTCACGAACT
AGTGGATATTTGTGCGCAAGTAGCGCAAGGAATGTCTTTCCTCGAATCCA
AAAACTTTATTCATCGAGATTTAGCTGCTAGGAATATATTGGTCGGCGAA
AATAACATCGTCAAAATTGCTGACTTTGACGATTCGCGCAGTGGAGCATG
GTTACCGGTTACCGAAACCACGTGACTGTCCGGACGAATTTTACGACGAG
ATGCTTCATTGTTGGAACGCCACACCAGAAGAACGCCCCACTTTCGAAAC
GCTGCAATGGACGCTGGAAGAATGGTTCCAAGATAAACGCCAATATGCCG
ATGAGTAAGTTTATCGCGGTGCATCGTGGATGGAGATTATGACGCACAAC
AAGGCTCCAGGTTCCCAATCAAGTGGACAGCACCGGAATCGTGCACTTAC
AATAAATTCACCACCAAATCGGACGTCTGGTCATTCGGTATTTTCATGTA
TGAGTGTGTGACTTACGGGAAAACACCCTACGCTGCCATGTCCAATGTAG
AGATGAAAAAGAAACTCGGTTCTGGACAATTTGGCGAAGTGTGGGAGGGT
GTGTGGAATAACCAAACGCCCGTCGCCATCAAATCCCTCAAAGAAGGTTC
CATGGATAAAGAACAATTCCTTGATGAAGCCGCCATTATGAAAAAATTAC
GTCATGATAAATTGATCAAATTATACGCAGTGGTGACGATACGAGAACCT
ATTCTCATTATCACGGAACTTATGAAAAACGGTTCTCTTTTGGATTATTT
TCGACATGGAGAAGGAAAACATCTGCAGTTTCACGAACTAGTGGATATTT
GTGCGCAAGTAGCGCAAGGAATGTCTTTCCTCGAATCCAAAAACTTTATT
CATCGAGATTTAGCTGCTAGGAATATATTGGTCGGCGAAAATAACATCGT
CAAAATTGCTGACTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042914XLOC_042914Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068841-proteinTCONS_00068841-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068841-exon-scaffold_49-1575043694:256489..257037TCONS_00068841-exon-scaffold_49-1575043694:256489..257037Clytia hemisphaericaexon
TCONS_00068841-exon-scaffold_49-1575043694:255998..256191TCONS_00068841-exon-scaffold_49-1575043694:255998..256191Clytia hemisphaericaexon
TCONS_00068841-exon-scaffold_49-1575043694:254268..255151TCONS_00068841-exon-scaffold_49-1575043694:254268..255151Clytia hemisphaericaexon
TCONS_00068841-exon-scaffold_49-1510915933:256489..257037TCONS_00068841-exon-scaffold_49-1510915933:256489..257037Clytia hemisphaericaexon
TCONS_00068841-exon-scaffold_49-1510915933:255998..256191TCONS_00068841-exon-scaffold_49-1510915933:255998..256191Clytia hemisphaericaexon
TCONS_00068841-exon-scaffold_49-1510915933:254268..255151TCONS_00068841-exon-scaffold_49-1510915933:254268..255151Clytia hemisphaericaexon
TCONS_00068841-exon-scaffold_49-1491911889:256489..257037TCONS_00068841-exon-scaffold_49-1491911889:256489..257037Clytia hemisphaericaexon
TCONS_00068841-exon-scaffold_49-1491911889:255998..256191TCONS_00068841-exon-scaffold_49-1491911889:255998..256191Clytia hemisphaericaexon
TCONS_00068841-exon-scaffold_49-1491911889:254268..255151TCONS_00068841-exon-scaffold_49-1491911889:254268..255151Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:254268..257037 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.1543	10.5401	9.20484	7.4777	26.7061	21.3572	28.0117	32.222	28.1167	30.477	30.6966	21.6515	32.5834	30.4831	33.1164	33.3964	35.3855	33.2658	36.6195	43.9176	32.7014	34.6483	29.9779	32.9919	28.0981	33.1561	30.3785	25.3676	47.4495	43.0619
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001245Ser-Thr/Tyr_kinase_cat_dom
IPR020635Tyr_kinase_cat_dom
IPR017441Protein_kinase_ATP_BS
IPR008266Tyr_kinase_AS
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0004713protein tyrosine kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0004713 protein tyrosine kinase activity
Blast
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BLAST of TCONS_00068841 vs. Swiss-Prot (Human)
Match: FRK (Tyrosine-protein kinase FRK OS=Homo sapiens GN=FRK PE=1 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 1.042e-116
Identity = 164/283 (57.95%), Postives = 217/283 (76.68%), Query Frame = 3 
Query:   84 YDLSHK--DQWEIPRDKLTMKKKLGSGQFGEVWEGVWNNQTPVAIKSLKEGSMDKEQFLDEAAIMKKLRHDKLIKLYAVVTIREPILIITELMKNGSLLDYFRHGEGKHLQFHELVDICAQVAQGMSFLESKNFIHRDLAARNILVGENNIVKIADFGLSRCI-VDGD--YDAQQGSRFPIKWTAPESCTYNKFTTKSDVWSFGIFMYECVTYGKTPYAAMSNVETIRAVEHGYRLPKPRDCPDEFYDEMLHCWNATPEERPTFETLQWTLEEWFQDKRQYAD 917
            +DLS+K  DQWEI R+ + + K+LGSGQFGEVWEG+WNN TPVA+K+LK GSMD   FL EA IMK LRH KLI+LYAV T+ +PI IITELM++GSL +Y ++  G  +   + VD+ AQVA GM++LES+N+IHRDLAARN+LVGE+NI K+ADFGL+R   VD +  Y+++   + P+KWTAPE+   NKF+ KSDVWSFGI +YE +TYGK PY+ M+  + I+ +   YRLP+P +CP +FY+ ML CWNA P+ERPTFETL+W LE++F+    Y+D
Sbjct:  217 FDLSYKTVDQWEIDRNSIQLLKRLGSGQFGEVWEGLWNNTTPVAVKTLKPGSMDPNDFLREAQIMKNLRHPKLIQLYAVCTLEDPIYIITELMRHGSLQEYLQNDTGSKIHLTQQVDMAAQVASGMAYLESRNYIHRDLAARNVLVGEHNIYKVADFGLARVFKVDNEDIYESRHEIKLPVKWTAPEAIRSNKFSIKSDVWSFGILLYEIITYGKMPYSGMTGAQVIQMLAQNYRLPQPSNCPQQFYNIMLECWNAEPKERPTFETLRWKLEDYFETDSSYSD 499
The following BLAST results are available for this feature:
BLAST of TCONS_00068841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FRK1.042e-11657.95Tyrosine-protein kinase FRK OS=Homo sapiens GN=FRK... [more]
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