TCONS_00068849 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068849
Unique NameTCONS_00068849
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1060

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068849 ID=TCONS_00068849|Name=TCONS_00068849|organism=Clytia hemisphaerica|type=transcript|length=1060bp
CTTTGTCTGTAATGTCTGTAATGTCTTATTACAAAAGAGTAGAGGTGCCA
TATAAAAGCAGTGAATGATTGGAAGGGTAACCTTAGTCAACTTATATCTT
TGAAAGAACAAAGTGtaaagaagatgaagaagattattttcatttttgcc
aGCCTCCTTTTGGTGCTAACCATTGTGGAAGGAGTTGGAAATGCTACAAA
GTGCGCTCATCAGTGCAGAAAGTCGTTCATGAAATGTTTTAATGCAACTC
GTGATGCTTCGATGTGCGGAGAAGAAGTCAAAATGTGTGCTAAAGAATGC
ATGGGTGGACGACCAACAAACAAAACAAGACCTACACCTAACTCGTGTTT
TATGGATTGCAGAAAGTCGTTCATGGAATGTTTTAACGCAACTCGTGATG
GTTCGATGTGCGGAGAAGAAGTCAAAATGTGTGCTAAAGAATGTATGGGT
GGACGACCAACAAACAAACCAAGACCTACACCTAACTCGTGTTTTATGGA
TTGCAGAAAGTCGTTCATGAAATGTTTTAACGCAACTCGTGATGCTTCGA
TGTGCGGAGAAGAAGCCAAAATGTGTGCTAAAGAATGTATGGGTGGACGA
CCAACAAACAAACCAAGACCTACACCTAACTCTTGTTTTATGAATTGCCG
TAAAGCAGTTTTCAAGTGTAAAAATGGTTCGAGGGATCCAAACGCATGCA
TGGCTTTTGCCAAGAGATGTGCAGGCGAATGTTGTGCCTTAACATGTCGC
AAAAGAATGCAAAGATGTTTGATGAGGACAAAAGATTTCAGAATGTGCTC
GATAGACGCTCAAAAGTGTTATCGAAGATGCTCCAATTAAAGAAGATCAA
CTACTTGTGAATGTGAAGAGAAAATGaacataagaaaaataaaaagtttc
ctTTTTGTTCAGAATGCCCAATTTCAACGACATCCAACCATTTTTGAGCC
AGTCCTAAGTTTTAGTCTCGTTTCGGCTTAAAATTTTTCACTAgacacaa
aaaatcaaatttgtttgaaaaataaaaaaaaacacccaaAGTTTTCCCCT
AAGGAACAAG
Run BLAST on NCBI

protein sequence of TCONS_00068849-protein

>TCONS_00068849-protein ID=TCONS_00068849-protein|Name=TCONS_00068849-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MKKIIFIFASLLLVLTIVEGVGNATKCAHQCRKSFMKCFNATRDASMCGE
EVKMCAKECMGGRPTNKTRPTPNSCFMDCRKSFMECFNATRDGSMCGEEV
KMCAKECMGGRPTNKPRPTPNSCFMDCRKSFMKCFNATRDASMCGEEAKM
CAKECMGGRPTNKPRPTPNSCFMNCRKAVFKCKNGSRDPNACMAFAKRCA
GECCALTCRKRMQRCLMRTKDFRMCSIDAQKCYRRCSN
Run BLAST on NCBI

transcript from alignment at scaffold_49:362072..364758-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068849 ID=TCONS_00068849|Name=TCONS_00068849|organism=Clytia hemisphaerica|type=transcript|length=2687bp|location=Sequence derived from alignment at scaffold_49:362072..364758- (Clytia hemisphaerica)
CTTTGTCTGTAATGTCTGTAATGTCTTATTACAAAAGAGTAGAGGTGCCA
TATAAAAGCAGTGAATGATTGGAAGGGTAACCTTAGTCAACTTATATCTT
TGAAAGAACAAAGTGTAAAGAAGATGAAGAAGATTATTTTCATTTTTGCC
AGCCTCCTTTTGGTGCTAACCATTGTGGAAGGAGTTGGAAATGCTACAAA
GTGCGCTCATCAGGTACAAGGGACACCTTTTTTATTCTTTGAGATTAGAA
AAATTAAATCAATCACAGCAGTGTTTTGCGGGTTATCGATAATTACACGC
TTTTTTTTTATAAGAATACACTTTATAAGAATGTCCGTGATGAAAATGGC
CAAAAAATTAGGAGTGATGCTAAGAATATCACCATCATGGAATTTGCTAC
TCAAGCTAAGAATGAACATTTTTAGAGCATTTTCAATTAAAAATTACCAA
TTACCCCCAAGAAAGGCTCATTCCTTTCACAAAAATGCCATTTTATGCTT
CAGACGTATGTACTAAACGTTAAATATAGCGAGAATTAGGATCCTAACCT
AAGAATGCTGTAAGGAGATTTTAGGATGATTTTCCCAAAAAAGTTAACAA
TTTCCATGATGAAATGGATTTAGACCATTCTTACTAAAAAAAAAGCGTGT
AGTCCTTTTACTATCTTTAATATAAAAAGACCATGTTTCATCCATATTAC
GGATTTCTTGCTAACTGCTAATAATTTGGGTAACTGGAAAACCTTTATAT
TTATTTAACAAACTATATTCTTTTCAACTTTAGTGCAGAAAGTCGTTCAT
GAAATGTTTTAATGCAACTCGTGATGCTTCGATGTGCGGAGAAGAAGTCA
AAATGTGTGCTAAAGAATGCATGGGTGGACGACCAACAAACAAAACAAGA
CCTACACCTAACTCGTGTTTTATGGATGTAAGAACTATATTTCTTGCTAA
CTGTTAATGTTTAGGTAACTGGAAAACCTTTATATTTATTTAACAAACTA
TATTCTTTTCAACTTTAGTGCAGAAAGTCGTTCATGGAATGTTTTAACGC
AACTCGTGATGGTTCGATGTGCGGAGAAGAAGTCAAAATGTGTGCTAAAG
AATGTATGGGTGGACGACCAACAAACAAACCAAGACCTACACCTAACTCG
TGTTTTATGGATGTAAGAACTACATTTCTTGCTAACTGTTAATTGTTAAT
GTTTGGGTAACTGGAAACCTTTATATTTATTTATCAAACTATATTCTTTT
CAACTTTAGTGCAGAAAGTCGTTCATGAAATGTTTTAACGCAACTCGTGA
TGCTTCGATGTGCGGAGAAGAAGCCAAAATGTGTGCTAAAGAATGTATGG
GTGGACGACCAACAAACAAACCAAGACCTACACCTAACTCTTGTTTTATG
AATGTAAGAATTATAATTCTTGCTAACTGTTAATGTTTCGGTAACTGGAA
AACCTTTATATTTATTTAACAAAGCACTGAGTAAAGAAAACGTTTCATGT
CATCCAGGATGGCAATCTTCAGAGACTAACTGCTAATGTTTTAATAATAG
TACAAGACACTTTATTTTCTTCTTTTCTTTTTCTTAATCAAACTTTAGTG
CATCATCAAACTGATGCAAGAAAAAGGTTTGAAAAGAGCTTTTGCAATAA
ATTTCATTGCATTTCATTAATCTTTAGTGCCGTAAAGCAGTTTTCAAGTG
TAAAANAAAAGGTTTGAAAAGAGTTTTTGCAATAAATTTCATTGCATTTC
ATTAATCTTTAGTGCCGTAAAGCAGTTTTCAAGTGTAAAAATGGTTCGAG
GGATCCAAACGCATGCATGGCTTTTGCCAAGAGATGTGCAGGCGAATGTT
GTGCCTTAACAGTAAGTAAAAAAATGTTTTCCATCCTGTCAGTTGTTGAC
TCGATAAGCCTGAATTTCATATCACCCTTAAAACACGAACTGTTACTGCC
CTAAATACTGGGATTAATTTTCCCGATGATTTCGCGGATTTGTTTGTCAT
CCACGAAAATAAGTCCCAATTGAAATCGGAAAAGGTGTTATCAGCGAATT
TTTTTTTGAATTAAATTCCTAAAAAATGTCAATTTTATCTCATAATAGAG
TCATCTGCAAAATTGAGTCCCTGCGAAATCTTGAAATTTTGCGCATGAGC
TTTACCGCGAAATTTAATCCCCGCGAAAATTAAGACTATTAAAGTATTCA
TGTTGGTTCGAAAAATGAAACTCTCAAGCTAGTGAATACGACTTGACCAA
GGAAAACGGACAACGATTTGCTTGCTTGCTTTTACTTGATAGGTAGGTCT
AATGAAGAGAAGGGCCAATATATCAATAGCATAGGACAAATTATGAAGTG
AACGTCTTCTTTCTCTTAAAGTGTCGCAAAAGAATGCAAAGATGTTTGAT
GAGGACAAAAGATTTCAGAATGTGCTCGATAGACGCTCAAAAGTGTTATC
GAAGATGCTCCAATTAAAGAAGATCAACTACTTGTGAATGTGAAGAGAAA
ATGAACATAAGAAAAATAAAAAGTTTCCTTTTTGTTCAGAATGCCCAATT
TCAACGACATCCAACCATTTTTGAGCCAGTCCTAAGTTTTAGTCTCGTTT
CGGCTTAAAATTTTTCACTAGACACAAAAAATCAAATTTGTTTGAAAAAT
AAAAAAAAACACCCAAAGTTTTCCCCTAAGGAACAAG

Coding sequence (CDS) from alignment at scaffold_49:362072..364758-

>TCONS_00068849 ID=TCONS_00068849|Name=TCONS_00068849|organism=Clytia hemisphaerica|type=CDS|length=4302bp|location=Sequence derived from alignment at scaffold_49:362072..364758- (Clytia hemisphaerica)
TGTCGCAAAAGAATGCAAAGATGTTTGATGAGGACAAAAGATTTCAGAAT
GTGCTCGATAGACGCTCAAAAGTGTTATCGAAGATGCTCCAATTAATGCC
GTAAAGCAGTTTTCAAGTGTAAAAATGGTTCGAGGGATCCAAACGCATGC
ATGGCTTTTGCCAAGAGATGTGCAGGCGAATGTTGTGCCTTAACATGCAG
AAAGTCGTTCATGAAATGTTTTAACGCAACTCGTGATGCTTCGATGTGCG
GAGAAGAAGCCAAAATGTGTGCTAAAGAATGTATGGGTGGACGACCAACA
AACAAACCAAGACCTACACCTAACTCTTGTTTTATGAATTGCAGAAAGTC
GTTCATGGAATGTTTTAACGCAACTCGTGATGGTTCGATGTGCGGAGAAG
AAGTCAAAATGTGTGCTAAAGAATGTATGGGTGGACGACCAACAAACAAA
CCAAGACCTACACCTAACTCGTGTTTTATGGATTGCAGAAAGTCGTTCAT
GAAATGTTTTAATGCAACTCGTGATGCTTCGATGTGCGGAGAAGAAGTCA
AAATGTGTGCTAAAGAATGCATGGGTGGACGACCAACAAACAAAACAAGA
CCTACACCTAACTCGTGTTTTATGGATATGAAGAAGATTATTTTCATTTT
TGCCAGCCTCCTTTTGGTGCTAACCATTGTGGAAGGAGTTGGAAATGCTA
CAAAGTGCGCTCATCAGTGTCGCAAAAGAATGCAAAGATGTTTGATGAGG
ACAAAAGATTTCAGAATGTGCTCGATAGACGCTCAAAAGTGTTATCGAAG
ATGCTCCAATTAATGCCGTAAAGCAGTTTTCAAGTGTAAAAATGGTTCGA
GGGATCCAAACGCATGCATGGCTTTTGCCAAGAGATGTGCAGGCGAATGT
TGTGCCTTAACATGCAGAAAGTCGTTCATGAAATGTTTTAACGCAACTCG
TGATGCTTCGATGTGCGGAGAAGAAGCCAAAATGTGTGCTAAAGAATGTA
TGGGTGGACGACCAACAAACAAACCAAGACCTACACCTAACTCTTGTTTT
ATGAATTGCAGAAAGTCGTTCATGGAATGTTTTAACGCAACTCGTGATGG
TTCGATGTGCGGAGAAGAAGTCAAAATGTGTGCTAAAGAATGTATGGGTG
GACGACCAACAAACAAACCAAGACCTACACCTAACTCGTGTTTTATGGAT
TGCAGAAAGTCGTTCATGAAATGTTTTAATGCAACTCGTGATGCTTCGAT
GTGCGGAGAAGAAGTCAAAATGTGTGCTAAAGAATGCATGGGTGGACGAC
CAACAAACAAAACAAGACCTACACCTAACTCGTGTTTTATGGATATGAAG
AAGATTATTTTCATTTTTGCCAGCCTCCTTTTGGTGCTAACCATTGTGGA
AGGAGTTGGAAATGCTACAAAGTGCGCTCATCAGTGTCGCAAAAGAATGC
AAAGATGTTTGATGAGGACAAAAGATTTCAGAATGTGCTCGATAGACGCT
CAAAAGTGTTATCGAAGATGCTCCAATTAATGCCGTAAAGCAGTTTTCAA
GTGTAAAAATGGTTCGAGGGATCCAAACGCATGCATGGCTTTTGCCAAGA
GATGTGCAGGCGAATGTTGTGCCTTAACATGCAGAAAGTCGTTCATGAAA
TGTTTTAACGCAACTCGTGATGCTTCGATGTGCGGAGAAGAAGCCAAAAT
GTGTGCTAAAGAATGTATGGGTGGACGACCAACAAACAAACCAAGACCTA
CACCTAACTCTTGTTTTATGAATTGCAGAAAGTCGTTCATGGAATGTTTT
AACGCAACTCGTGATGGTTCGATGTGCGGAGAAGAAGTCAAAATGTGTGC
TAAAGAATGTATGGGTGGACGACCAACAAACAAACCAAGACCTACACCTA
ACTCGTGTTTTATGGATTGCAGAAAGTCGTTCATGAAATGTTTTAATGCA
ACTCGTGATGCTTCGATGTGCGGAGAAGAAGTCAAAATGTGTGCTAAAGA
ATGCATGGGTGGACGACCAACAAACAAAACAAGACCTACACCTAACTCGT
GTTTTATGGATATGAAGAAGATTATTTTCATTTTTGCCAGCCTCCTTTTG
GTGCTAACCATTGTGGAAGGAGTTGGAAATGCTACAAAGTGCGCTCATCA
GTGTCGCAAAAGAATGCAAAGATGTTTGATGAGGACAAAAGATTTCAGAA
TGTGCTCGATAGACGCTCAAAAGTGTTATCGAAGATGCTCCAATTAATGC
CGTAAAGCAGTTTTCAAGTGTAAAAATGGTTCGAGGGATCCAAACGCATG
CATGGCTTTTGCCAAGAGATGTGCAGGCGAATGTTGTGCCTTAACATGCA
GAAAGTCGTTCATGAAATGTTTTAACGCAACTCGTGATGCTTCGATGTGC
GGAGAAGAAGCCAAAATGTGTGCTAAAGAATGTATGGGTGGACGACCAAC
AAACAAACCAAGACCTACACCTAACTCTTGTTTTATGAATTGCAGAAAGT
CGTTCATGGAATGTTTTAACGCAACTCGTGATGGTTCGATGTGCGGAGAA
GAAGTCAAAATGTGTGCTAAAGAATGTATGGGTGGACGACCAACAAACAA
ACCAAGACCTACACCTAACTCGTGTTTTATGGATTGCAGAAAGTCGTTCA
TGAAATGTTTTAATGCAACTCGTGATGCTTCGATGTGCGGAGAAGAAGTC
AAAATGTGTGCTAAAGAATGCATGGGTGGACGACCAACAAACAAAACAAG
ACCTACACCTAACTCGTGTTTTATGGATATGAAGAAGATTATTTTCATTT
TTGCCAGCCTCCTTTTGGTGCTAACCATTGTGGAAGGAGTTGGAAATGCT
ACAAAGTGCGCTCATCAGTGTCGCAAAAGAATGCAAAGATGTTTGATGAG
GACAAAAGATTTCAGAATGTGCTCGATAGACGCTCAAAAGTGTTATCGAA
GATGCTCCAATTAATGCCGTAAAGCAGTTTTCAAGTGTAAAAATGGTTCG
AGGGATCCAAACGCATGCATGGCTTTTGCCAAGAGATGTGCAGGCGAATG
TTGTGCCTTAACATGCAGAAAGTCGTTCATGAAATGTTTTAACGCAACTC
GTGATGCTTCGATGTGCGGAGAAGAAGCCAAAATGTGTGCTAAAGAATGT
ATGGGTGGACGACCAACAAACAAACCAAGACCTACACCTAACTCTTGTTT
TATGAATTGCAGAAAGTCGTTCATGGAATGTTTTAACGCAACTCGTGATG
GTTCGATGTGCGGAGAAGAAGTCAAAATGTGTGCTAAAGAATGTATGGGT
GGACGACCAACAAACAAACCAAGACCTACACCTAACTCGTGTTTTATGGA
TTGCAGAAAGTCGTTCATGAAATGTTTTAATGCAACTCGTGATGCTTCGA
TGTGCGGAGAAGAAGTCAAAATGTGTGCTAAAGAATGCATGGGTGGACGA
CCAACAAACAAAACAAGACCTACACCTAACTCGTGTTTTATGGATATGAA
GAAGATTATTTTCATTTTTGCCAGCCTCCTTTTGGTGCTAACCATTGTGG
AAGGAGTTGGAAATGCTACAAAGTGCGCTCATCAGTGTCGCAAAAGAATG
CAAAGATGTTTGATGAGGACAAAAGATTTCAGAATGTGCTCGATAGACGC
TCAAAAGTGTTATCGAAGATGCTCCAATTAATGCCGTAAAGCAGTTTTCA
AGTGTAAAAATGGTTCGAGGGATCCAAACGCATGCATGGCTTTTGCCAAG
AGATGTGCAGGCGAATGTTGTGCCTTAACATGCAGAAAGTCGTTCATGAA
ATGTTTTAACGCAACTCGTGATGCTTCGATGTGCGGAGAAGAAGCCAAAA
TGTGTGCTAAAGAATGTATGGGTGGACGACCAACAAACAAACCAAGACCT
ACACCTAACTCTTGTTTTATGAATTGCAGAAAGTCGTTCATGGAATGTTT
TAACGCAACTCGTGATGGTTCGATGTGCGGAGAAGAAGTCAAAATGTGTG
CTAAAGAATGTATGGGTGGACGACCAACAAACAAACCAAGACCTACACCT
AACTCGTGTTTTATGGATTGCAGAAAGTCGTTCATGAAATGTTTTAATGC
AACTCGTGATGCTTCGATGTGCGGAGAAGAAGTCAAAATGTGTGCTAAAG
AATGCATGGGTGGACGACCAACAAACAAAACAAGACCTACACCTAACTCG
TGTTTTATGGATATGAAGAAGATTATTTTCATTTTTGCCAGCCTCCTTTT
GGTGCTAACCATTGTGGAAGGAGTTGGAAATGCTACAAAGTGCGCTCATC
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042917XLOC_042917Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068849-proteinTCONS_00068849-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068849-exon-scaffold_49-1575043694:364546..364758TCONS_00068849-exon-scaffold_49-1575043694:364546..364758Clytia hemisphaericaexon
TCONS_00068849-exon-scaffold_49-1575043694:363832..363975TCONS_00068849-exon-scaffold_49-1575043694:363832..363975Clytia hemisphaericaexon
TCONS_00068849-exon-scaffold_49-1575043694:363597..363740TCONS_00068849-exon-scaffold_49-1575043694:363597..363740Clytia hemisphaericaexon
TCONS_00068849-exon-scaffold_49-1575043694:363356..363499TCONS_00068849-exon-scaffold_49-1575043694:363356..363499Clytia hemisphaericaexon
TCONS_00068849-exon-scaffold_49-1575043694:362898..362996TCONS_00068849-exon-scaffold_49-1575043694:362898..362996Clytia hemisphaericaexon
TCONS_00068849-exon-scaffold_49-1575043694:362072..362387TCONS_00068849-exon-scaffold_49-1575043694:362072..362387Clytia hemisphaericaexon
TCONS_00068849-exon-scaffold_49-1510915933:364546..364758TCONS_00068849-exon-scaffold_49-1510915933:364546..364758Clytia hemisphaericaexon
TCONS_00068849-exon-scaffold_49-1510915933:363832..363975TCONS_00068849-exon-scaffold_49-1510915933:363832..363975Clytia hemisphaericaexon
TCONS_00068849-exon-scaffold_49-1510915933:363597..363740TCONS_00068849-exon-scaffold_49-1510915933:363597..363740Clytia hemisphaericaexon
TCONS_00068849-exon-scaffold_49-1510915933:363356..363499TCONS_00068849-exon-scaffold_49-1510915933:363356..363499Clytia hemisphaericaexon
TCONS_00068849-exon-scaffold_49-1510915933:362898..362996TCONS_00068849-exon-scaffold_49-1510915933:362898..362996Clytia hemisphaericaexon
TCONS_00068849-exon-scaffold_49-1510915933:362072..362387TCONS_00068849-exon-scaffold_49-1510915933:362072..362387Clytia hemisphaericaexon
TCONS_00068849-exon-scaffold_49-1491911889:364546..364758TCONS_00068849-exon-scaffold_49-1491911889:364546..364758Clytia hemisphaericaexon
TCONS_00068849-exon-scaffold_49-1491911889:363832..363975TCONS_00068849-exon-scaffold_49-1491911889:363832..363975Clytia hemisphaericaexon
TCONS_00068849-exon-scaffold_49-1491911889:363597..363740TCONS_00068849-exon-scaffold_49-1491911889:363597..363740Clytia hemisphaericaexon
TCONS_00068849-exon-scaffold_49-1491911889:363356..363499TCONS_00068849-exon-scaffold_49-1491911889:363356..363499Clytia hemisphaericaexon
TCONS_00068849-exon-scaffold_49-1491911889:362898..362996TCONS_00068849-exon-scaffold_49-1491911889:362898..362996Clytia hemisphaericaexon
TCONS_00068849-exon-scaffold_49-1491911889:362072..362387TCONS_00068849-exon-scaffold_49-1491911889:362072..362387Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:362072..364758 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.531535	0.0129288	0	0	0.258148	0	0	0	81.8255	48.2151	0	0.329969	22.6274	38.2547	442.786	404.837	123.207	133.452	57.915	71.6769	38.8088	52.3736	0	0	0.055887	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068849 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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