TCONS_00068932 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068932
Unique NameTCONS_00068932
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068932 ID=TCONS_00068932|Name=TCONS_00068932|organism=Clytia hemisphaerica|type=transcript|length=587bp
AGTTCTAatttaggttttaaggtgtattttgattttaacgtacagttttg
aCAATATTTAGGTCCCAATCATCTAATTGCAACATTAGAtactttgcagt
gaatcactgttcaaaatttgagaccaaaaggactattttataaaaagtta
tggagaaaaaccattttgtagaaCCCACAGACAGCGTACTTttaacacaa
aaagtttcagcctaaaATAAATTCAACCTAAATTTTCAGATAGAGGGTAC
TTCTATTTTTTGCAGGTTTTAAGCGGTATTCACTGGTAGTAATTTTTCAC
TCGCTTGTATAGCTGGAAAAAAGTACAGATTTTTGGGTGAAGGCTGGAAA
AAGGTACATTTTCCAGCTGAAAATACCTGGAAAAAAATGATGTTTATGAC
CAAAACAGCTGGATTTCTCTTCTAAAATTCCACCCTGTAACTTATATAAA
AGGGATAGAAGATACACGACAAAATTAACAGTTGGAAAAAAACCATGTcc
caaaaaagaattttgtgaCATTGCCTTGAATTATGAATATAAATGATCAT
GCCGATTTATCACCATGTAGATAtcccaaaatagaaa
Run BLAST on NCBI

transcript from alignment at scaffold_49:472447..473033

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068932 ID=TCONS_00068932|Name=TCONS_00068932|organism=Clytia hemisphaerica|type=transcript|length=587bp|location=Sequence derived from alignment at scaffold_49:472447..473033 (Clytia hemisphaerica)
tttctattttgggaTATCTACATGGTGATAAATCGGCATGATCATTTATA
TTCATAATTCAAGGCAATGtcacaaaattcttttttgggACATGGTTTTT
TTCCAACTGTTAATTTTGTCGTGTATCTTCTATCCCTTTTATATAAGTTA
CAGGGTGGAATTTTAGAAGAGAAATCCAGCTGTTTTGGTCATAAACATCA
TTTTTTTCCAGGTATTTTCAGCTGGAAAATGTACCTTTTTCCAGCCTTCA
CCCAAAAATCTGTACTTTTTTCCAGCTATACAAGCGAGTGAAAAATTACT
ACCAGTGAATACCGCTTAAAACCTGCAAAAAATAGAAGTACCCTCTATCT
GAAAATTTAGGTTGAATTTATtttaggctgaaactttttgtgttaaAAGT
ACGCTGTCTGTGGGttctacaaaatggtttttctccataactttttataa
aatagtccttttggtctcaaattttgaacagtgattcactgcaaagtaTC
TAATGTTGCAATTAGATGATTGGGACCTAAATATTGtcaaaactgtacgt
taaaatcaaaatacaccttaaaacctaaatTAGAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042952XLOC_042952Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068932-exon-scaffold_49-1491911889:472447..473033TCONS_00068932-exon-scaffold_49-1491911889:472447..473033Clytia hemisphaericaexon
TCONS_00068932-exon-scaffold_49-1510915933:472447..473033TCONS_00068932-exon-scaffold_49-1510915933:472447..473033Clytia hemisphaericaexon
TCONS_00068932-exon-scaffold_49-1575043694:472447..473033TCONS_00068932-exon-scaffold_49-1575043694:472447..473033Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:472447..473033 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.281569	0.823724	0.318807	1.35158	0.253141	0.800143	0.844671	0.564836	0.316364	0.391868	0.665624	0.125016	1.56052	1.5558	0.639538	0.285967	0.352288	0.288867	1.69612	3.96734	1.47924	1.32788	0	0.195673	0.705387	0.539606	0.257392	0.641887	0.82999	0.346035
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068932 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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