TCONS_00068938 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068938
Unique NameTCONS_00068938
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length895

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068938 ID=TCONS_00068938|Name=TCONS_00068938|organism=Clytia hemisphaerica|type=transcript|length=895bp
AGTGAAATGCCATATTATCGATACGAACggttgatttttcttgtaatttg
CTTCGTGGTGCCTATCCTAGCTATCGGGAATGTCAGTGTTGATTATCTAT
GGTCTCGTTTAGTCAGACAAATAAGCCGGAACCGCACAGCAGAGAAAGAG
TTCCACTGGGACAAAGTGATGCAATTTTTACAGGAACAGAGACCAGGCAA
TAGACCTTGGCAATCCGTCATGGCTTTTATTTTGTCCATCATTGCCGTCT
TTGCTGCTATACAGTTCCGTATATTGAGCAGTAAAGCCATCAACAGTGCA
ACACATTTTCAACCGTTAAATGTGACTGAGGTTTACTTTACttagaaatt
ttcttctttaatttttattactttgtaTTCTTTActcttacattttagta
ctcGTGTAATTTATTTTGATTGATAACTATTAGATTTATTTCTCGCCATT
TAGCCAACTAGAAAGTTAAAATGCACTGTCAATGAACAGGCGGGTCGCTT
TTTCTTCAGGAATGTGATTAGCTACAAAAGTTACTCAtcaatatctttcc
aaccagTTCCAACAAGTGGAGGCCAGTGCAGCCTTATTATGATAGCAAAT
TTCGTTCAACGCTTTGCTTTGCACTTTTCCAAATCGTATTGTCTTTGATA
ATCATTTCAAATCTGTCAGCTCGTAAAATTTTCGTGATAATTACCTTaac
ggggaaaaaatgtcgggggaaagtgacgaacaTTTTTAGAGGCGGTGacg
aaatttggattttttcgAACTATCAAattcatattcatttttcactaaaa
atgcGAGCTATGTGAAATGAGGAAAAAGTTTATTGTTGGCCCAGACTACA
AGACACCCCCTTCGCAATTGAATtcaaaaaatcctaccgggtccg
Run BLAST on NCBI

protein sequence of TCONS_00068938-protein

>TCONS_00068938-protein ID=TCONS_00068938-protein|Name=TCONS_00068938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
SEMPYYRYERLIFLVICFVVPILAIGNVSVDYLWSRLVRQISRNRTAEKE
FHWDKVMQFLQEQRPGNRPWQSVMAFILSIIAVFAAIQFRILSSKAINSA
THFQPLNVTEVYFT
Run BLAST on NCBI

transcript from alignment at scaffold_49:612383..613277

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068938 ID=TCONS_00068938|Name=TCONS_00068938|organism=Clytia hemisphaerica|type=transcript|length=895bp|location=Sequence derived from alignment at scaffold_49:612383..613277 (Clytia hemisphaerica)
cggacccggtaggattttttgaATTCAATTGCGAAGGGGGTGTCTTGTAG
TCTGGGCCAACAATAAACTTTTTCCTCATTTCACATAGCTCgcattttta
gtgaaaaatgaatatgaatTTGATAGTTcgaaaaaatccaaatttcgtCA
CCGCCTCTAAAAAtgttcgtcactttcccccgacattttttccccgttAA
GGTAATTATCACGAAAATTTTACGAGCTGACAGATTTGAAATGATTATCA
AAGACAATACGATTTGGAAAAGTGCAAAGCAAAGCGTTGAACGAAATTTG
CTATCATAATAAGGCTGCACTGGCCTCCACTTGTTGGAActggttggaaa
gatattgaTGAGTAACTTTTGTAGCTAATCACATTCCTGAAGAAAAAGCG
ACCCGCCTGTTCATTGACAGTGCATTTTAACTTTCTAGTTGGCTAAATGG
CGAGAAATAAATCTAATAGTTATCAATCAAAATAAATTACACgagtacta
aaatgtaagagTAAAGAAtacaaagtaataaaaattaaagaagaaaattt
ctaaGTAAAGTAAACCTCAGTCACATTTAACGGTTGAAAATGTGTTGCAC
TGTTGATGGCTTTACTGCTCAATATACGGAACTGTATAGCAGCAAAGACG
GCAATGATGGACAAAATAAAAGCCATGACGGATTGCCAAGGTCTATTGCC
TGGTCTCTGTTCCTGTAAAAATTGCATCACTTTGTCCCAGTGGAACTCTT
TCTCTGCTGTGCGGTTCCGGCTTATTTGTCTGACTAAACGAGACCATAGA
TAATCAACACTGACATTCCCGATAGCTAGGATAGGCACCACGAAGcaaat
tacaagaaaaatcaaccGTTCGTATCGATAATATGGCATTTCACT

Coding sequence (CDS) from alignment at scaffold_49:612383..613277

>TCONS_00068938 ID=TCONS_00068938|Name=TCONS_00068938|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_49:612383..613277 (Clytia hemisphaerica)
ctaaGTAAAGTAAACCTCAGTCACATTTAACGGTTGAAAATGTGTTGCAC
TGTTGATGGCTTTACTGCTCAATATACGGAACTGTATAGCAGCAAAGACG
GCAATGATGGACAAAATAAAAGCCATGACGGATTGCCAAGGTCTATTGCC
TGGTCTCTGTTCCTGTAAAAATTGCATCACTTTGTCCCAGTGGAACTCTT
TCTCTGCTGTGCGGTTCCGGCTTATTTGTCTGACTAAACGAGACCATAGA
TAATCAACACTGACATTCCCGATAGCTAGGATAGGCACCACGAAGcaaat
tacaagaaaaatcaaccGTTCGTATCGATAATATGGCATTTCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042958XLOC_042958Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068938-exon-scaffold_49-1491911889:612383..613277TCONS_00068938-exon-scaffold_49-1491911889:612383..613277Clytia hemisphaericaexon
TCONS_00068938-exon-scaffold_49-1510915933:612383..613277TCONS_00068938-exon-scaffold_49-1510915933:612383..613277Clytia hemisphaericaexon
TCONS_00068938-exon-scaffold_49-1575043694:612383..613277TCONS_00068938-exon-scaffold_49-1575043694:612383..613277Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068938-proteinTCONS_00068938-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:612383..613277 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.47668	2.57736	0.762909	0	3.82713	1.62816	3.97935	2.79471	2.14485	3.30957	1.71333	1.93158	1.26476	1.29226	1.70543	1.32506	3.15456	1.32524	1.60764	0.751961	2.79866	1.79103	11.2018	8.63367	1.25003	0.880995	2.02744	2.73753	5.7918	6.27257
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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