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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068957 ID=TCONS_00068957|Name=TCONS_00068957|organism=Clytia hemisphaerica|type=transcript|length=4984bpRun BLAST on NCBI protein sequence of TCONS_00068957-protein >TCONS_00068957-protein ID=TCONS_00068957-protein|Name=TCONS_00068957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1550bp MNNYIKLLIFISFVLTKGQDTDKRVPFIRYHPQSVEVSKGEKIQLRCYVYRun BLAST on NCBI transcript from alignment at scaffold_491:8724..23513+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068957 ID=TCONS_00068957|Name=TCONS_00068957|organism=Clytia hemisphaerica|type=transcript|length=14790bp|location=Sequence derived from alignment at scaffold_491:8724..23513+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_491:8724..23513+ >TCONS_00068957 ID=TCONS_00068957|Name=TCONS_00068957|organism=Clytia hemisphaerica|type=CDS|length=83754bp|location=Sequence derived from alignment at scaffold_491:8724..23513+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068957 vs. Swiss-Prot (Human)
Match: ROBO1 (Roundabout homolog 1 OS=Homo sapiens GN=ROBO1 PE=1 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 2.503e-63 Identity = 230/882 (26.08%), Postives = 377/882 (42.74%), Query Frame = 2
Query: 203 PFIRYHPQSVEVSKGEKIQLRCYVYGNPIPKVTWYKDNVPVTENKAE---GRLVLEDESLVMQKARRSSK-HDDTGVYYCVAKNEVGSDRSNNATVKVRYISNRFRYSPQNATVEMHKIHTMKCRPPNSYPNATIEWYHNDVLVQPKQYQIDIFDLNGDSHIQFGRITWEERGKYTCHASNSEGTKKSEPAYLTVKVIKPDLYSHWTTVEAYVGKTLQLQCFNKFKPEPDRTWMKREGDMPESSRIGYQY-DKSVMIINGAKISDSGEYVCTGENEAGKQSIIVKVIVYEKPTFLIQPTDMTIGRGQTATFQCQVKGGKSPTIEWFYNTK-----AYSQKFQSGNVIVTKDNDLVISNVDTFGQQSVVCTYRDSISRNQDKKFSPKVFLKVTSSV-NPPPSVQVLTEVKKTEKSDLTLPCVVRTSAGEQASIKW-----LTASDNREVDTGANTVWITAGINSANLTIQGLLTSDSGGYRCVAETPSGTISNITMLQVNAL-LSEKPPKITNLNSVGT----------SATSITLSWDRPKTAILLPITSYFLKVKNTGTLETVERFAAGSATK-YVVQGLEPDSTYLITINAINKVGNGVAANFPFTDTLDA-NVTPDPSGAEDKLEDVNLGISL------GTVTTSTIEVRWN-KVSANRITGYIVMHREV----SKSAFIESEEITPTKTSLVLYGLKANTEYAIKVKAVSSKHQ-KESSLKTGKTLNR---LPPVAKKVYIEKYSASDMIVFWKISSEDLDLVDTVEITIQQSDTSSSGNKVPFAKVTLPKTSKKKLFENIDNTKIYYVVVLLKTVDGKTGKSTEIPAPWARLAVGEKTPDF-------DAVIPGGEKEEENSLGDIVKEPWFIATIG 2695
P I HP + VSKGE L C G P P + WYK V +K + R++L SL + K D GVY CVA+N +G S+NA+++V + + FR +P + V + + M+C+PP +P TI W + + K +I I G I + R + + GKY C +N G ++SE A LTV + +P + + V + + +C + P P W K +G++P+S Y+ D + I D G Y C EN GK + V E P F+++P D + G+T TFQC+ G P I W +Y S V++ DL I+NV +C + N K +L+VT + + PP V V +T D T + +I W L ++ + + N V L I+ D+G Y C+A TPSG + ++V + +PP+ T+ N + + S ++TLSW + P TSY ++ + + + + A T+ ++GL+P++ YL + A N G++ +D + +V P G + K LG ++ +++S+IEV W + I GY +++R +S ++ E TP K S+V+ L+ Y IK + ++ Q +S +K KTL PP V + + ++V W+ E DT +Q+ GN+ ++ + + +D + V+ L V G S E+ A + + P F + V P + + D+VK+P FIA IG
Sbjct: 68 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHNASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI--RGGKLMITYTRKS--DAGKYVCVGTNMVGERESEVAELTV-LERPSFVKRPSNLAVTVDDSAEFKCEARGDPVPTVRWRKDDGELPKSR---YEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAEASATLTVQEPPHFVVKPRDQVVALGRTVTFQCEATGNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQ-----TLNVAGSIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV----------LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSAPSKPEVTDVSRNTVTLSWQPNLNSGATP-TSYIIEAFSHASGSSWQTVAENVKTETSAIKGLKPNAIYLFLVRAANAY--GISDPSQISDPVKTQDVLPTSQGVDHKQVQRELGNAVLHLHNPTVLSSSSIEVHWTVDQQSQYIQGYKILYRPSGANHGESDWLVFEVRTPAKNSVVIPDLRKGVNYEIKARPFFNEFQGADSEIKFAKTLEEAPSAPPQGVTVSKNDGNGTAILVSWQPPPE-----DTQNGMVQEYKVWCLGNE-----------TRYHINKTVDGSTFSVVIPFL--VPG-IRYSVEVAASTGAGSGVKSEPQFIQLDAHGNPVSPEDQVSLAQQISDVVKQPAFIAGIG 904 The following BLAST results are available for this feature:
BLAST of TCONS_00068957 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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