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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068998 ID=TCONS_00068998|Name=TCONS_00068998|organism=Clytia hemisphaerica|type=transcript|length=1902bp
TGCGCACGCTTCGCTGTGGCAGTTCTCTCCAGTAGTTTCGTTTTCAGTCG
TTCAAAGAAACAGAACAGAAGCGCCagaacaaaaaaaacacaaaaaaaca
gcAAGAATCCTGCTGTAAAAATGTCTGAACAGAAGTATGGTCTTTTTATG
AAGAGTTTGCAAAAGAAGAAAGGCTTGAATAAAGTACACTCTGCGTTTGG
AAATGATAGCAGCAGTGATGAAggtaattcaaagaaaaacaacaagaagT
CTGCAACAGACGAAAGTTCCAAAAAACTTTCcatgaaacaaacaaaaatt
gacATGGAAAAAGCTCTGAATGAAGACCCAACTGTGTATGAATATGATGA
GGTTTATGATCAAATggaagagaaaaagaaagagaCTGTTGCTGCAAAGA
TTCAAGCTGACAAAAAGagtaaatatatttcaaaacttttgaaatctact
GAGAGTCGGAAACTTGAAGAAGAGAGGCGTAAGGAacgtaaaattcaaaa
agagaGAGAGGCTGAGGGGGAGGAGTTTGCAGATAAGGAAGAGTTTGTTA
CATCTTCTTACAAGAAGAAAATTGAGGAAAGAAAAGCAGAAGAAGAACGT
CAAAGAAAACAAGACGAGGCCGATGCTGCCAATGATGTTACCAAACAAAA
AGATCTTGGAATGTTTTATAAAAATCTCATGAACAAAAACACTTCAATGG
GAGGAAATGCTTCTGACTCAGAACATGATACtaagtcaaagaaaaaagag
gagaACATCAAGTCATCTTCTAAATCAGCTGCAAAATCTAAAAACGAATC
ATCAGAGGGGGAAGAACATGAGACAGACTCTCATAGATTCAAGAAGAGCA
CCAAAAGAGGAAAGAAAAGCAGAAGAAGAACGTCAAAGAAAACAAGACGA
GGCCGATGCTGCCAATGATGTTACCAAACAAAAAGATCTTGGAATGTTTT
ATAAAAATCTCATGAACAAAAACACTTCAATGGGAGGAAATGCTTCTGAC
TCAGAACATGATACtaagtcaaagaaaaaagaggagaACATCAAGTCATC
TTCTAAATCAGCTGCAAAATCTAAAAACGAATCATCAGAGGGGGAAGAAC
ATGAGACAGACTCTCATAGATTCAAGAAGAGCACCAAAAGAGGTtatcga
aaagttgaaaaaagttaCAGCAGTGAAAGTAGTGCAGAAGAAGAGGATGC
TAAGCAGCAGAAAGTAAAGAACAAGAAAAAGTTAAGCCGTAACAATTCAA
GTGATGACTCTGATTATGAAAAGGATAAAAGGTCCGGAAAAAAAGCCCCt
tccaaaaagaaaagacgAGACTCTTCTTCAGAATACTCATCTGAAAGCAG
TAGTGAAGATGAAAAGCCAAAACGAAAAGCTAATAAGAAATTGTCACCCA
AAAGAAAACCTAGGGAAAGCTCTGATGAGGAAttgcaaacaaaaaagaaa
gtggTAAAATCCCAATCATCCAGCAAACAAGAATCTAACAAAAAAGGAAG
AAAGCGTTCAAAATCCACAGATGAATCAGACAGTGGATCAGAATATGAGA
AAAAACAGAAGAAGAGTGCAAAGAAGTCAAAACAACGTAAAAATTCCAGC
TCAGAAAACTCTGACGCTAGCAACAGTGGCCCTATTAAATCTGAGAAAAA
GATTGAAGCTGAGGAAAAGCCTCTGAAAAAGCCTCccacgaaaaagaaaa
atatttttgctagaCGAAATACAGCAGAAGACATTGAAGCTGCAAGAGAG
AGATATTTAGCCCGAAAGCAAGCTTTATCAAGGGCTGAGTAATGTAAATT
TTATTATAAGATTTTATCACTTTTATAGCTGTATTTTTAAACAAAGTTCA
AATCTTTAGTCTTTTTCTTTCCCTTCTCCTCAGAGATCTAAACAAAAGGC
AG Run BLAST on NCBI protein sequence of TCONS_00068998-protein >TCONS_00068998-protein ID=TCONS_00068998-protein|Name=TCONS_00068998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
MLLTQNMILSQRKKRRTSSHLLNQLQNLKTNHQRGKNMRQTLIDSRRAPK
EERKAEEERQRKQDEADAANDVTKQKDLGMFYKNLMNKNTSMGGNASDSE
HDTKSKKKEENIKSSSKSAAKSKNESSEGEEHETDSHRFKKSTKRGYRKV
EKSYSSESSAEEEDAKQQKVKNKKKLSRNNSSDDSDYEKDKRSGKKAPSK
KKRRDSSSEYSSESSSEDEKPKRKANKKLSPKRKPRESSDEELQTKKKVV
KSQSSSKQESNKKGRKRSKSTDESDSGSEYEKKQKKSAKKSKQRKNSSSE
NSDASNSGPIKSEKKIEAEEKPLKKPPTKKKNIFARRNTAEDIEAARERY
LARKQALSRAE Run BLAST on NCBI transcript from alignment at scaffold_491:338096..340861- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068998 ID=TCONS_00068998|Name=TCONS_00068998|organism=Clytia hemisphaerica|type=transcript|length=2766bp|location=Sequence derived from alignment at scaffold_491:338096..340861- (Clytia hemisphaerica)
TGCGCACGCTTCGCTGTGGCAGTTCTCTCCAGTAGTTTCGTTTTCAGTCG
TTCAAAGAAACAGAACAGAAGCGCCAGAACAAAAAAAACACAAAAAAACA
GCAAGAATCCTGCTGTAAAAATGTCTGAACAGAAGTATGGTCTTTTTATG
AAGAGTTTGCAAAAGAAGAAAGGCTTGAATAAAGTACACTCTGCGTTTGG
AAATGATAGCAGCAGTGATGAAGGTAATTCAAAGAAAAACAACAAGAAGT
CTGCAACAGACGAAAGTTCCAAAAAACTTTCCATGAAACAAACAAAAATT
GACATGGAAAAAGCTCTGAATGAAGACCCAACTGTGTATGAATATGATGA
GGTTTATGATCAAATGGAAGAGAAAAAGAAAGAGACTGTTGCTGCAAAGA
TTCAAGCTGACAAAAAGAGTAAATATATTTCAAAACTTTTGAAATCTACT
GAGAGTCGGAAACTTGAAGAAGAGAGGCGTAAGGAACGTAAAATTCAAAA
AGAGAGAGAGGCTGAGGGGGAGGAGTTTGCAGATAAGGAAGAGTTTGTTA
CATCTTCTTACAAGAAGAAAATTGAGGAAAGAAAAGCAGAAGAAGAACGT
CAAAGAAAACAAGACGAGGCCGATGCTGCCAATGATGTTACCAAACAAAA
AGATCTTGGAATGTTTTATAAAAATCTCATGAACAAAAACACTTCAATGG
GAGGAAATGCTTCTGACTCAGAACATGATACTAAGTCAAAGAAAAAAGAG
GAGAACATCAAGTCATCTTCTAAATCAGCTGCAAAATCTAAAAACGAATC
ATCAGAGGGGGAAGAACATGAGACAGACTCTCATAGATTCAAGAAGAGCA
CCAAAAGAGGTTATCGAAAAGTTGAAAAAAGTTACAGCAGTGAAAGTAGT
GCAGAAGAAGAGGATGCTAAGCAGCTGAAAGTAAAGAACAAGAAAAAGTT
AAGCTGTAACAATTCAAGTGATGACTCTGATTATGAAAAGGATAAAAGGT
CTGGAAAAAAAGCCCCTTCCAAAAAGAAAAGACGAGACTCTTCTTCAGAA
TACTCATCTGAAAGCAGTAGTGAAGATGAAAAGCCAAAACGAAANTTATG
TGACTTGATTGGTGACCTAGCTCAAGCGAGCACAAATCTTTGAAAAGTGC
GCACGCTTCGCTGTGGCAGTTCTCTCCAGTAGTTTCGTTTTCAGTCGTTC
AAAGAAACAGAACAGAAGCGCCAGAACAAAAAAAACACAAAAAAACAGCA
AGAATCCTGCTGTAAAAATGTCTGAACAGAAGTATGGTCTTTTTATGAAG
AGTTTGCAAAAGAAGAAAGGCTTGAATAAAGTACACTCTGCGTTTGGAAA
TGATAGCAGCAGTGATGAAGGTAATTCAAAGAAAAACAACAAGAAGTCTG
CAACAGACGAAAGTTCCAAAAAACTTTCCATGAAACAAACAAAAATTGAC
ATGGAAAAAGCTCTGAATGAAGACCCAACTGTGTATGAATATGATGAGGT
TTATGATCAAATGGAAGAGAAAAAGAAAGAGACTGTTGCTGCAAAGATTC
AAGCTGACAAAAAGAGTAAATATATTTCAAAACTTTTGAAATCTACTGAG
AGTCGGAAACTTGAAGAAGAGAGGCGTAAGGAACGTAAAATTCAAAAAGA
GAGAGAGGCTGAGGGGGAGGAGTTTGCAGATAAGGAAGAGTTTGTTACAT
CTTCTTACAAGAAGAAAATTGAGGAAAGAAAAGCAGAAGAAGAACGTCAA
AGAAAACAAGACGAGGCCGATGCTGCCAATGATGTTACCAAACAAAAAGA
TCTTGGAATGTTTTATAAAAATCTCATGAACAAAAACACTTCAATGGGAG
GAAATGCTTCTGACTCAGAACATGATACTAAGTCAAAGAAAAAAGAGGAG
AACATCAAGTCATCTTCTAAATCAGCTGCAAAATCTAAAAACGAATCATC
AGAGGGGGAAGAACATGAGACAGACTCTCATAGATTCAAGAAGAGCACCA
AAAGAGGTTATCGAAAAGTTGAAAAAAGTTACAGCAGTGAAAGTAGTGCA
GAAGAAGAGGATGCTAAGCAGCAGAAAGTAAAGAACAAGAAAAAGTTAAG
CCGTAACAATTCAAGTGATGACTCTGATTATGAAAAGGATAAAAGGTCCG
GAAAAAAAGCCCCTTCCAAAAAGAAAAGACGAGACTCTTCTTCAGAATAC
TCATCTGAAAGCAGTAGTGAAGATGAAAAGCCAAAACGAAAAGCTAATAA
GAAATTGTCACCCAAAAGAAAACCTAGGGAAAGCTCTGATGAGGAATTGC
AAACAAAAAAGAAAGTGGTAAAATCCCAATCATCCAGCAAACAAGAATCT
AACAAAAAAGGAAGAAAGCGTTCAAAATCCACAGATGAATCAGACAGTGG
ATCAGAATATGAGAAAAAACAGAAGAAGAGTGCAAAGAAGTCAAAACAAC
GTAAAAATTCCAGCTCAGAAAACTCTGACGCTAGCAACAGTGGCCCTATT
AAATCTGAGAAAAAGATTGAAGCTGAGGAAAAGCCTCTGAAAAAGCCTCC
CACGAAAAAGAAAAATATTTTTGCTAGACGAAATACAGCAGAAGACATTG
AAGCTGCAAGAGAGAGATATTTAGCCCGAAAGCAAGCTTTATCAAGGGCT
GAGTAATGTAAATTTTATTATAAGATTTTATCACTTTTATAGCTGTATTT
TTAAACAAAGTTCAAATCTTTAGTCTTTTTCTTTCCCTTCTCCTCAGAGA
TCTAAACAAAAGGCAG Coding sequence (CDS) from alignment at scaffold_491:338096..340861- >TCONS_00068998 ID=TCONS_00068998|Name=TCONS_00068998|organism=Clytia hemisphaerica|type=CDS|length=2172bp|location=Sequence derived from alignment at scaffold_491:338096..340861- (Clytia hemisphaerica)
GAAAGAAAAGCAGAAGAAGAACGTCAAAGAAAACAAGACGAGGCCGATGC
TGCCAATGATGTTACCAAACAAAAAGATCTTGGAATGTTTTATAAAAATC
TCATGAACAAAAACACTTCAATGGGAGGAAATGCTTCTGACTCAGAACAT
GATACTAAGTCAAAGAAAAAAGAGGAGAACATCAAGTCATCTTCTAAATC
AGCTGCAAAATCTAAAAACGAATCATCAGAGGGGGAAGAACATGAGACAG
ACTCTCATAGATTCAAGAAGAGCACCAAAAGAGGTTATCGAAAAGTTGAA
AAAAGTTACAGCAGTGAAAGTAGTGCAGAAGAAGAGGATGCTAAGCAGCA
GAAAGTAAAGAACAAGAAAAAGTTAAGCCGTAACAATTCAAGTGATGACT
CTGATTATGAAAAGGATAAAAGGTCCGGAAAAAAAGCCCCTTCCAAAAAG
AAAAGACGAGACTCTTCTTCAGAATACTCATCTGAAAGCAGTAGTGAAGA
TGAAAAGCCAAAACGAAAAGCTAATAAGAAATTGTCACCCAAAAGAAAAC
CTAGGGAAAGCTCTGATGAGGAATTGCAAACAAAAAAGAAAGTGGTAAAA
TCCCAATCATCCAGCAAACAAGAATCTAACAAAAAAGGAAGAAAGCGTTC
AAAATCCACAGATGAATCAGACAGTGGATCAGAATATGAGAAAAAACAGA
AGAAGAGTGCAAAGAAGTCAAAACAACGTAAAAATTCCAGCTCAGAAAAC
TCTGACGCTAGCAACAGTGGCCCTATTAAATCTGAGAAAAAGATTGAAGC
TGAGGAAAAGCCTCTGAAAAAGCCTCCCACGAAAAAGAAAAATATTTTTG
CTAGACGAAATACAGCAGAAGACATTGAAGCTGCAAGAGAGAGATATTTA
GCCCGAAAGCAAGCTTTATCAAGGGCTGAGTAAATGCTTCTGACTCAGAA
CATGATACTAAGTCAAAGAAAAAAGAGGAGAACATCAAGTCATCTTCTAA
ATCAGCTGCAAAATCTAAAAACGAATCATCAGAGGGGGAAGAACATGAGA
CAGACTCTCATAGATTCAAGAAGAGCACCAAAAGAGGAAAGAAAAGCAGA
AGAAGAACGTCAAAGAAAACAAGACGAGGCCGATGCTGCCAATGATGTTA
CCAAACAAAAAGATCTTGGAATGTTTTATAAAAATCTCATGAACAAAAAC
ACTTCAATGGGAGGAAATGCTTCTGACTCAGAACATGATACTAAGTCAAA
GAAAAAAGAGGAGAACATCAAGTCATCTTCTAAATCAGCTGCAAAATCTA
AAAACGAATCATCAGAGGGGGAAGAACATGAGACAGACTCTCATAGATTC
AAGAAGAGCACCAAAAGAGGTTATCGAAAAGTTGAAAAAAGTTACAGCAG
TGAAAGTAGTGCAGAAGAAGAGGATGCTAAGCAGCAGAAAGTAAAGAACA
AGAAAAAGTTAAGCCGTAACAATTCAAGTGATGACTCTGATTATGAAAAG
GATAAAAGGTCCGGAAAAAAAGCCCCTTCCAAAAAGAAAAGACGAGACTC
TTCTTCAGAATACTCATCTGAAAGCAGTAGTGAAGATGAAAAGCCAAAAC
GAAAAGCTAATAAGAAATTGTCACCCAAAAGAAAACCTAGGGAAAGCTCT
GATGAGGAATTGCAAACAAAAAAGAAAGTGGTAAAATCCCAATCATCCAG
CAAACAAGAATCTAACAAAAAAGGAAGAAAGCGTTCAAAATCCACAGATG
AATCAGACAGTGGATCAGAATATGAGAAAAAACAGAAGAAGAGTGCAAAG
AAGTCAAAACAACGTAAAAATTCCAGCTCAGAAAACTCTGACGCTAGCAA
CAGTGGCCCTATTAAATCTGAGAAAAAGATTGAAGCTGAGGAAAAGCCTC
TGAAAAAGCCTCCCACGAAAAAGAAAAATATTTTTGCTAGACGAAATACA
GCAGAAGACATTGAAGCTGCAAGAGAGAGATATTTAGCCCGAAAGCAAGC
TTTATCAAGGGCTGAGTAAATGCTTCTGACTCAGAACATGATACTAAGTC
AAAGAAAAAAGAGGAGAACATCAAGTCATCTTCTAAATCAGCTGCAAAAT
CTAAAAACGAATCATCAGAGGGGGAAGAACATGAGACAGACTCTCATAGA
TTCAAGAAGAGCACCAAAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068998-exon-scaffold_491-1575043694:340003..340861 | TCONS_00068998-exon-scaffold_491-1575043694:340003..340861 | Clytia hemisphaerica | exon |
| TCONS_00068998-exon-scaffold_491-1575043694:338096..339138 | TCONS_00068998-exon-scaffold_491-1575043694:338096..339138 | Clytia hemisphaerica | exon |
| TCONS_00068998-exon-scaffold_491-1510915933:340003..340861 | TCONS_00068998-exon-scaffold_491-1510915933:340003..340861 | Clytia hemisphaerica | exon |
| TCONS_00068998-exon-scaffold_491-1510915933:338096..339138 | TCONS_00068998-exon-scaffold_491-1510915933:338096..339138 | Clytia hemisphaerica | exon |
| TCONS_00068998-exon-scaffold_491-1491911889:340003..340861 | TCONS_00068998-exon-scaffold_491-1491911889:340003..340861 | Clytia hemisphaerica | exon |
| TCONS_00068998-exon-scaffold_491-1491911889:338096..339138 | TCONS_00068998-exon-scaffold_491-1491911889:338096..339138 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_491 | supercontig | scaffold_491:338096..340861 - |
Blast
The following BLAST results are available for this feature:
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